Commit Graph

23477 Commits

Author SHA1 Message Date
Allen Byrne
162f01292c
Rework the TestExpress usage and refactor dead code (#4590) 2024-06-20 14:01:43 -07:00
Dana Robinson
9fe7132fe3
Remove dead H5FD_s3comms_percent_encode_char() (#4591) 2024-06-19 16:22:21 -05:00
Dana Robinson
45711d7c94
Remove magic fields from s3comms structs (#4589) 2024-06-19 13:03:10 -07:00
Dana Robinson
f931c2aed2
Removed unused code from H5FDs3comms.c (#4588)
* H5FD_s3comms_nlowercase()
* H5FD_s3comms_trim()
* H5FD_s3comms_uriencode()
2024-06-19 12:24:13 -07:00
Dana Robinson
a229778142
Cleanup of ros3 test (#4587)
* Removed JS* macro scheme (replaced w/ h5test.h macros)
* Moved curl setup/teardown to main()
* A lot of cleanup and simplification
2024-06-19 08:36:45 -05:00
Dana Robinson
ef701abb90
Remove printf debugging from H5FDs3comms.c (#4584) 2024-06-19 07:51:50 -05:00
Dana Robinson
9e1a9abc64
Remove public API call from ros3 VFD (#4583) 2024-06-19 07:49:07 -05:00
mattjala
90cfab3c05
Clarify documentation for H5CX_get_data_transform (#4580)
* Correct comment for H5CX_get_data_transform

* Document why data transform ctx field doesnt use macro
2024-06-19 07:48:11 -05:00
Allen Byrne
e7796a60d2
Add page buffer cache command line option to tools (#4562)
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2024-06-19 07:38:30 -05:00
Quincey Koziol
850d6c8f06
Pause recording errors instead of clearing the error stack (#4475)
An internal capability that's similar to the H5E_BEGIN_TRY / H5E_END_TRY
macros in H5Epublic.h, but more efficient since we can avoid pushing errors on
the stack entirely (and those macros use public API routines).

This capability (and other techniques) can be used to remove use of
H5E_clear_stack() and H5E_BEGIN_TRY / H5E_END_TRY within library routines.

We want to remove H5E_clear_stack() because it can trigger calls to the H5I
interface from within the H5E code, which creates a great deal of complexity
for threadsafe code.  And we want to remove H5E_BEGIN_TRY / H5E_END_TRY's
because they make public API calls from within the library code.

Also some other minor tidying in routines related to removing the use of
H5E_clear_stack() and H5E_BEGIN_TRY / H5E_END_TRY from H5Fint.c
2024-06-18 14:17:43 -07:00
Dana Robinson
82a0ff1127
Turn off ros3 VFD stat collection by default (#4581)
Not a new change - an artifact from a previous check-in.
2024-06-18 14:15:30 -07:00
Dana Robinson
49e32531ef
Clean up ros3 VFD stats code (#4579)
* Removes printf debugging
* Simplifies and centralizes stats code
* Use #ifdef ROS3_STATS instead of #if
* Other misc tidying
2024-06-18 11:50:27 -07:00
Dana Robinson
0ab5a1a805
Rename INSTALL_Auto.txt to INSTALL_Autotools.txt (#4575) 2024-06-18 10:05:16 -07:00
Dana Robinson
6bc6fb641f
Clean up comments in H5FDros3.c (#4572) 2024-06-17 11:00:22 -07:00
H. Joe Lee
3ab08320fe
Update NVHPC to 24.5 (#4171)
We don't test parallel in other GitHub actions, so this also converts the
NVHPC check to configure and build only while we discuss how we'll
test parallel HDF5 in GitHub.

There is a blocking GitHub issue to address the test failures for
HDF5 1.14.5 (#4571).
2024-06-15 11:04:42 -07:00
mattjala
2fa630c1cd
Document H5Punregister modifying default properties (#4570) 2024-06-15 10:45:12 -07:00
mattjala
ce99ebcc99
Clarify H5CX macro documentation (#4569) 2024-06-14 09:18:25 -07:00
mattjala
db4465f2e9
Document property shared name behavior (#4565) 2024-06-14 09:17:57 -07:00
mattjala
acbbf15202
Add property names to context field docs (#4563) 2024-06-14 09:04:49 -07:00
Allen Byrne
49219d9fce
Remove old version of libaec (#4567) 2024-06-14 09:03:00 -07:00
jhendersonHDF
4a0b1b66a5
Allow usage of page buffering for serial file access from parallel HDF5 builds (#4568) 2024-06-13 14:18:31 -05:00
Allen Byrne
539d1756e5
Add compression includes to tests needing zlib support (#4561) 2024-06-12 07:57:58 -05:00
mattjala
09fe0ba079
Document 'return-and-read' field in API context (#4560) 2024-06-12 07:57:38 -05:00
Allen Byrne
dca6370691
Move C++ and Fortran and examples to HDF5Examples folder (#4552) 2024-06-08 06:46:09 -05:00
Dana Robinson
f44fa558f2
Clean up off_t --> HDoff_t stragglers (#4555)
* off_t --> HDoff_t in test

* off_t --> HDoff_t in h5ls, h5dump, & h5repack

* Minor off_t tweak to configure.ac

* off_t --> HDoff_t fixes in src

This changes the type of the offset parameter in H5Pget_external()
to HDoff_t to match H5Pset_external(), along with other minor tweaks.

* off_t --> HDoff_t in C++ wrappers

* Fix off_t usage in Java wrapper
2024-06-07 17:25:06 -07:00
mattjala
0cd6a094ab
Correct property cb signatures in docs (#4554)
* Correct property cb signatures in docs
* Correct delete callback type name in docs
* add missing word to H5P__free_prop doc
2024-06-07 17:09:32 -07:00
bmribler
7f83faf9d9
Add Python examples (#4546)
These examples are referred to from the replacement page of https://portal.hdfgroup.org/display/HDF5/Other+Examples.
2024-06-07 17:03:05 -07:00
mattjala
c18f1fb5d9
Simplify property copying between lists internally (#4551) 2024-06-07 16:59:49 -07:00
Dana Robinson
5500743755
Fix CI markdown link check http 500 errors (#4556)
Sites like GitLab can have internal problems that return http 500
errors while they fix their problems. Some sites also return http
200 OK, which is fine.

This PR adds a config file to the markdown link check so those
are considered "passing" and don't break the CI.
2024-06-07 13:08:50 -07:00
mattjala
c1b3255c69
Fix typos in context/property documentation (#4550) 2024-06-07 09:04:40 -07:00
Allen Byrne
1dc0b67715
Adjust h5repack userblock option to allow reserve size (#4544) 2024-06-05 16:18:12 -05:00
Scot Breitenfeld
5e591ab4da
Export HDF5 version for CMake FetchContent'ed VOL connectors (#4548) 2024-06-05 16:17:40 -05:00
Philipp Oppermann
b698b484ae
Change type of offset arg in H5Pset_external to HDoff_t (#3505)
The `off_t` type is only 32-bit on Windows, which makes it impossible to link to higher offsets in large files.

The `H5O_efl_entry_t` struct defines its `offset` field already as `HDoff_t`, so no additional conversion is needed.
2024-06-04 14:16:27 -07:00
Allen Byrne
552510e906
Add option to use zlib-ng as zlib library (#4487) 2024-06-04 09:44:13 -07:00
jhendersonHDF
b823c1609d
Remove an unnecessary check for parallel and thread-safety from examples (#4543) 2024-06-03 15:10:19 -05:00
jhendersonHDF
3877c074bc
Export HDF5 parallel status for CMake FetchContent'ed VOL connectors (#4542) 2024-06-03 15:10:01 -05:00
bmribler
c8371caa6b
Fix various mistakes in doxygen docs (#4541)
* Fix a dead link and example file names

* Add the missing content of a section
2024-06-03 07:46:41 -05:00
dependabot[bot]
62274e4a49
Bump the github-actions group with 3 updates (#4538)
Bumps the github-actions group with 3 updates: [softprops/action-gh-release](https://github.com/softprops/action-gh-release), [ossf/scorecard-action](https://github.com/ossf/scorecard-action) and [github/codeql-action](https://github.com/github/codeql-action).


Updates `softprops/action-gh-release` from 2.0.4 to 2.0.5
- [Release notes](https://github.com/softprops/action-gh-release/releases)
- [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md)
- [Commits](9d7c94cfd0...69320dbe05)

Updates `ossf/scorecard-action` from 2.3.1 to 2.3.3
- [Release notes](https://github.com/ossf/scorecard-action/releases)
- [Changelog](https://github.com/ossf/scorecard-action/blob/main/RELEASE.md)
- [Commits](0864cf1902...dc50aa9510)

Updates `github/codeql-action` from 3.25.3 to 3.25.7
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](d39d31e687...f079b84933)

---
updated-dependencies:
- dependency-name: softprops/action-gh-release
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: ossf/scorecard-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: github/codeql-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-06-02 20:14:50 -07:00
Dana Robinson
5b366b3b7b
Remove julia CI actions (#4540)
These have been failing for a week or two for unclear reasons, both
in the Autotools and CMake. No obvious library changes triggered
this.

See GitHub issue #4539 for more info/discussion

The Julia tests will be disabled until the root cause is found.
2024-06-02 13:49:08 -07:00
Larry Knox
826bef160f
Fix a few function names in USAGE comments that don't match the actual (#4533)
* Fix a few function names in USAGE comments that don't match the actual
function names.

* Remove typo '['

* Switch to working url for api-compatibility-macros.html.
2024-06-02 13:27:27 -07:00
Quincey Koziol
12740af4a6
Refactor to reduce code duplication (#4531)
* Update error output w/new routine name
2024-05-30 22:12:30 -05:00
Quincey Koziol
fd6d4cd6ba
H5FDquery return value (#4530)
* Switch H5FDquery() return values to use library's FAIL / SUCCEED macros

* Update return value also
2024-05-30 22:11:29 -05:00
Peter Chang
421f935140
Fix wrong int type as some systems have int as 64-bit wide (#4534) 2024-05-30 22:09:50 -05:00
Scot Breitenfeld
aa696f01e5
Point to HDFGroup repository (#4535)
* point to HDFGroup repository

* updated checkout locations

* Fix incorrect and dead documentation link in
release_docs/RELEASE_PROCESS.md.

---------

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2024-05-30 20:37:52 -05:00
mattjala
acb9ca5f99
Fix typos in property callback documentation (#4532) 2024-05-30 07:48:15 -05:00
Allen Byrne
162e7d676d
Allow HDF5_LIB_INFIX to work with DLL (#4500)
* Allow HDF5_LIB_INFIX to work with DLL

* Separate individual library name into parts and add suffix option

* Java cannot use alternative names and removed extra setting

* Incorporate the underscore into the CORE name
2024-05-28 08:27:15 -07:00
H. Joe Lee
8873e17e88
Fix function name in USAGE for H5Pencode2() (#4519) 2024-05-28 08:26:13 -07:00
Allen Byrne
3bd8159ccd
Disable UNITY_BUILD for now - globally (#4515) 2024-05-25 06:25:45 -05:00
Dana Robinson
0ae9c7021a
Move/rename libhdf5.settings input files (#4525)
Move without other changes:

src/libhdf5.settings.in -> src/libhdf5.settings.autotools.in
config/cmake/libhdf5.settings.cmake.in -> src/libhdf5.settings.cmake.in
2024-05-24 15:59:52 -05:00
mattjala
d3f5e07b1e
Fix typo in DAPL callback documentation (#4523) 2024-05-24 07:41:07 -05:00