* Add binary test job
* Correct names of jobs
* Add build mode to binary names
* Limit packaging execution
* Make mac DragNDrop optional
* Format if checks
* fix checks for TS
* Allow examples to be packaged
* Correct if NOT format
* Correct configure and workflow call
* Separate out CMake/Autotools Parallel job
* Correct binary examples path
* Correct dir path for windows test
* Correct paths and add extlibs
* Windows binaries do not have a share folder
Use of an uninitialized H5L_info2_t struct caused some JNI tests to
raise asserts, causing a dialog box to be emitted, which would hang
automated tests.
Initializing the struct fixes the problem.
This change also re-enables tests in the Windows Debug GitHub actions.
Updates main CI workflow concurrency group so that the group should be a unique string formed as "workflow file-commit" or "workflow file-PR number". This should only cancel actions for a PR if the same PR is committed to while the actions are running.
* Add fetchcontent for compression libs and fix cmake config
* MSDOS is a reserved define name
* Add release note and update install doc for FetchContent
* Add CI test for FetchContent
* Use LINK_COMP_LIBS instead of STATIC_LIBRARY for depends
* Use general link
* lowercase the toolchain filenames
* Change name of option define
* Update CI with changed toolchain name
* Correct Intel compiler names
* Account for Intels name for compiler based on clang
* Make icx default and rename classic to icc
New actions added to GitHub CI to build parallel HDF5 w/ CFLAGS=-Werror. Since the GitHub runners are so underpowered, we just configure, build, and install but do not run tests. This covers Autotools only, both debug and release.
szip (or libaec) is currently not tested in CI. This adds szip to the
the Autotools GitHub CI actions on Linux when building with the
Autotools.
This PR also cleans up a few warnings that remained in the szip-
related code so the -Werror check will pass.
* Fix for Autotools --disable-deprecated-symbols
When we added v116 as a valid option, we left the default as v114 so
using --disable-deprecated-symbols leads configure to complain that you
can't set a default API that was deprecated.
The GitHub action didn't catch this because it explicitly specifies v116
This only affects develop w/ the Autotools when
--disable-deprecated-symbols is requested.
* Added v116 & default to the --with-default-api-version help string
The Autotools --with-default-api-version help string was missing v116.
This has been added, as well as a "default" target so the CI can catch
version problems when we forget to update the defaults upon creating
a new major version.
The GitHub CI also now uses "default" as the target for the deprecated
symbols build.
* Fixes the 1.14 API GitHub CI threadsafe/build_mode
This action still had the bug we fixed where we set the build mode
and threadsafety using an array of size one instead of an object.
* H5F_LIBVER_LATEST changes for move to 1.15
* Add new default api check
* Format fixes
* Fix default configure
* fix lib version tests
* Fix another version variable
* Add 1.14 doc link
* Converts the YAML build mode arrays to objects in special runs
* Adds a dump of the matrix context for each test
This would have made it a LOT easier to debug the build_mode issues...
* Disable the mirror VFD in the -Werror checks
We can re-enable this after we fix the warnings, but I don't want to
conflate code and GitHub changes, so this is a better way to get the
CI to pass for now.
* Use ubuntu-20.04 for github autotools parallel tests until parallel
configure is fixed on ubuntu 22.04.
* Remove inactive developers from CODEOWNERS.
* Temporarily cat config.log for autotools build in github actions.
* Try ubuntu-latest.
* Attempt to cat config.log even when configure fails.
* Fix syntax.
* Try again
* Try again
* Try again.
* Back to original temporary fix.
* Install libopenmpi-dev with openmpi-bin, which was installed as a
dependency prior to ubuntu-22.04.
* Cleans up main GitHub workflow(s)
* Combines main.yml and pr-check.yml, which differed trivially
* Reduces config redundancy via proper use of the matrix scheme
* Adds build-only configs for:
- Version 1.6 default API
- No deprecated symbols
- Parallel HDF5
* The -Werror config was converted to build-only
* Makes the naming scheme more uniform
* Spaces out the code and adds comments
* Typo fix
* Fix mirror VFD CMake configure typo
* Debugging hack
* Undo debug hack and fix CMake build mode
* Set CC=mpicc for parallel builds
* Another attempt to fix parallel builds
* Updates comments in main.yml
* Fixes a v16 API bug in the mirror VFD test code
* Committing clang-format changes
* Added checks for v1.8 - 1.12 APIs
* Manually specify Windows configs
Java debug builds time out when running tests on Windows. We'll disable
them in debub mode while we investigate.
* Revert "Manually specify Windows configs"
This reverts commit d710d8d219.
* Skip Debug Windows configs while we investigate Java H5L timeouts
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Adds a -Werror debug Autotools test and updates build modes
* Un-excludes the workflow files
* Strip out -Werror from CFLAGS when running configure tests
This causes spurious test failures when the configuration test
programs raise warnings.
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Keep doxygen comments under 100 chars long - format hint
* Whitespace
* HDFFV-11144 - Reclassify CMake messages
* HDFFV-11099/11100 added help text
* Reworked switch statement to compare string instead
* Fix typo
* Update CDash mode
* Correct name of threadsafe
* Correct option name
* Undo accidental commit
* Note LLVM 10 to 11 format default changes
* Update format plugin
* Undo clang-format version 11 changes
* One more correction
* Update supported platforms
* Revert whitespace changes
* Correct whitespace
* Changes from PR#3
* HDFFV-11213 added option to control gcc10 warnings diagnostics
* HDFFV-11212 Use the new references correctly in JNI utility and tests
* format source
* Fix typo
* Add new test file
* HDFFV-11212 - update test and remove unused arg
* Minor non-space formatting changes
* Use H5I_INVALID_ID instead of "-1"
* source formatting
* add missing testfile, update jni function
* Undo commit of debug code
* remove mislocated file
* Fix h5repack test for handling of fapls and id close
* Update h5diff test files usage text
* HDFFV-11212 add new ref tests for JNI export dataset
* src format update
* Remove blank line typo
* src format typo
* long double requires %Lg
* Another long double foramt specifer S.B. %Lg
* issue with t128bit test
* Windows issue with h5dump and type.
* Fix review issues
* refactor function nesting and fix error checks
* format fixes
* Remove untested functions and javadoc quiet comments
* Restore TRY block.
* Change string append errors to memory exception
* revert to H5_JNI_FATAL_ERROR - support functions need work
* Add assertion error for h5util functions
* remove duplicate function
* format fix
* Revert HD function error handling
* Update copyright comments
* GH #386 java folder copyright corrections
* Whitespace
* GH #359 implement and fix tools 1.6 API usage
* remove excessive comments
* Flip inits to correct ifdef section
* rework ifdef to be simpler
* format issue
* Reformat ifdef inits
* remove static attribute
* format compliance
* Update names
* Revert because logic relies on float not being int
* Changes noticed from creating merge of #412
* Double underscore change
* Correct compiler version variable used
* Remove header guard underscores
* Whitespace cleanup
* Split format source and commit changes on repo push
* remove pre-split setting
* Change windows TS to use older VS.
* correct window os name
* HDFFV-11212 JNI export util and Javadoc
* Suggested review changes
* Another change found
* Committing clang-format changes
* HDFFV-11113 long double in tools
* HDFFV-11113 add note
* Disable long double tests for now
* HDFFV-11228 remove arbitrary CMake warning groups.
* Make each flag a string
* Some Javadoc warning fixes
* Updated javadoc fixes
* # WARNING: head commit changed in the meantime
HDFFV-11229 Fix long double usage in tools and java
Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.
* Committing clang-format changes
* HDFFV-11229 Add release note
* HDFFV-11229 windows testfile needed
* fix typo
* Remove non supported message text
* HDFFV-11229 - change ldouble test to check both native and general
* HDFFV-11229 add second file compare
* HDFFV-11229 fix reference file
* HDFFV-11229 autotools check two refs
* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output
* Committing clang-format changes
* Update release note
* Update attribute type of ref file
* Change source of ninja for macs
* try port instead of brew
* Recommended is to use brew.
* Undo non long double changes
* remove unneeded file
* Fix perl and doxygen CMake code
* Add "option" command for clang options
* Rework CMake add_custom to use the BYPRODUCTS argument
* Add stamp files to BYPRODUCTS
* Only one copy of file exists
* Fix custom cmmand depends targets
* Fix fortran custom command DEPENDS
* Add LD_LIBRARY_PATH to tests
* Add custom target for DEPENDS
* Add h5detect conditionaly to generated target DEPENDS
* Correct DEPENDS targets
* Parallel builds need the mpi compiler for pkgconfig scripts.
* install only if MPI build
* Fortran target depends
* Remove incorrect source attribute
* doxygen adjustments
* doxygen build updates
* Correct version
* Correct function version - function has been merged to 1.12
* Correct version string for map functions
* Cleanup warnings for tools debug builds
* TRILAB-227 - fix indexing for h5diff selections
* Correct location of pos to index function call
* TRILAB-227 Enable test
* Quote subset args
* Use MATCHES because of AppleClang
* if blocks needed for build modes
* Update list of DT platforms
* VS2019 correctly displays float values
* revert VS2019 change
* Issue #669 remove version from pkgcfg filename
* remove version from h5cc script
* Java reference functions updated
enabled fortran in cmake gcc action yaml file
java reference test changed to correctly test refs
jni reference functions that create ids changed to use jni id logging
* Correct BYPRODUCTS argument
* Correct more genereated files BYPRODUCTS
* BYPRODUCTS must have unique locations
* Fix typo
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Keep doxygen comments under 100 chars long - format hint
* Whitespace
* HDFFV-11144 - Reclassify CMake messages
* HDFFV-11099/11100 added help text
* Reworked switch statement to compare string instead
* Fix typo
* Update CDash mode
* Correct name of threadsafe
* Correct option name
* Undo accidental commit
* Note LLVM 10 to 11 format default changes
* Update format plugin
* Undo clang-format version 11 changes
* One more correction
* Update supported platforms
* Revert whitespace changes
* Correct whitespace
* Changes from PR#3
* HDFFV-11213 added option to control gcc10 warnings diagnostics
* HDFFV-11212 Use the new references correctly in JNI utility and tests
* format source
* Fix typo
* Add new test file
* HDFFV-11212 - update test and remove unused arg
* Minor non-space formatting changes
* Use H5I_INVALID_ID instead of "-1"
* source formatting
* add missing testfile, update jni function
* Undo commit of debug code
* remove mislocated file
* Fix h5repack test for handling of fapls and id close
* Update h5diff test files usage text
* HDFFV-11212 add new ref tests for JNI export dataset
* src format update
* Remove blank line typo
* src format typo
* long double requires %Lg
* Another long double foramt specifer S.B. %Lg
* issue with t128bit test
* Windows issue with h5dump and type.
* Fix review issues
* refactor function nesting and fix error checks
* format fixes
* Remove untested functions and javadoc quiet comments
* Restore TRY block.
* Change string append errors to memory exception
* revert to H5_JNI_FATAL_ERROR - support functions need work
* Add assertion error for h5util functions
* remove duplicate function
* format fix
* Revert HD function error handling
* Update copyright comments
* GH #386 java folder copyright corrections
* Whitespace
* GH #359 implement and fix tools 1.6 API usage
* remove excessive comments
* Flip inits to correct ifdef section
* rework ifdef to be simpler
* format issue
* Reformat ifdef inits
* remove static attribute
* format compliance
* Update names
* Revert because logic relies on float not being int
* Changes noticed from creating merge of #412
* Double underscore change
* Correct compiler version variable used
* Remove header guard underscores
* Whitespace cleanup
* Split format source and commit changes on repo push
* remove pre-split setting
* Change windows TS to use older VS.
* correct window os name
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Keep doxygen comments under 100 chars long - format hint
* Whitespace
* HDFFV-11144 - Reclassify CMake messages
* HDFFV-11099/11100 added help text
* Reworked switch statement to compare string instead
* Fix typo
* Update CDash mode
* Correct name of threadsafe
* Correct option name
* Undo accidental commit
