3188 Commits

Author SHA1 Message Date
James Laird
11af96e867 [svn-r13102] Found a bug: shared message list sizes above the maximum were not caught.
Fixed bug and a related one where the number of indexes could be set
above the maximum.

Added tests for both bugs.

Tested on kagiso and smirom.
2007-01-03 12:48:51 -05:00
Quincey Koziol
b5a2e7c634 [svn-r13101] Description:
Change to more complicated method of re-adding an attribute whose name
changes size, in order to get memory accesses correct.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-01-03 10:04:55 -05:00
Quincey Koziol
9aa47d6ad5 [svn-r13100] Description:
Fix bug which could possibly corrupt file data if an attribute was
renamed to a longer name.

Tested on:
	FreeBSD/32 6.1 (duty)
2007-01-02 23:42:13 -05:00
Quincey Koziol
c1d6230290 [svn-r13098] Description:
Checkpoint changes for bug fix, to shift coding to another machine.

Tested on:
    Linux/64 2.6 (chicago2)
2007-01-02 18:24:44 -05:00
Quincey Koziol
76ee1b2bda [svn-r13096] Description:
Fix updating values of shared attributes in dense storage & add test.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-01-02 15:21:44 -05:00
Quincey Koziol
8081ee4221 [svn-r13095] Description:
Minor edits on the way to testing writing to shared attributes in dense
storage.

Tested on:
	Mac OS X/32 10.4.8 (amazon)
	Too minor to require h5committest
2007-01-02 09:20:35 -05:00
James Laird
2d42a6277c [svn-r13087] Added a small test to check that SOHMs work fine when using external links. They do.
Tested on smirom, kagiso, and Windows.
2006-12-22 15:56:36 -05:00
James Laird
b1c318eebe [svn-r13086] Added deletion test for shared messages. I'm not sure that this test is
as complete as it could be, so I may add to it later.

Fixed a bug in reference counting messages that are referenced by shared
messages (attribute datatypes and dataspaces).

Tested on mir, smirom, and Windows.
2006-12-22 13:23:08 -05:00
James Laird
e3fe4f7790 [svn-r13085] Yesterday's checkin wasn't a complete fix for copying filters in DCPLs.
Extended the test so it broke again and then fixed it again.

Tested on kagiso.
2006-12-21 11:05:00 -05:00
James Laird
56dae018e2 [svn-r13084] Fixed a bug that occurrs when copying DCPLs with filters that have filter
data.

Added a regression test for this bug.

Tested on kagiso.
2006-12-20 16:33:51 -05:00
Elena Pourmal
6b156d43a9 [svn-r13080] Description:
Maintenance for the HPUX 11.23 platform.

Problem:
	C++ shared libraries are not supported for the 64bit mode (+DD64 compiler flag)

Solution:
	Disable shared C++ library when +DD64 flag is detected.

Platforms tested:
	sirius (HPUX 11.23 at UMKC) and kagiso
2006-12-20 10:22:54 -05:00
Quincey Koziol
de9088b6bb [svn-r13079] Description:
Add more tests for checking that writing to shared attributes works
correctly.  (Looks like it still has a bug when dense storage is used, which
I'll correct shortly).

    Add testing routine to shared message code, to retrieve reference count for
a shared message.

    Add fractal heap 'op' callback for efficiently computing the hash value of
an existing encoded message in the shared message fractal heap.

    Various minor cleanups and warning placations.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-19 15:18:26 -05:00
Quincey Koziol
43ec5b7ef4 [svn-r13074] Description:
Add support for opening attributes in dense and/or shared storage by
index.

    Move routines for building and operating on tables of attributes into
separate source module.

    Fix bug where reverting from "dense" to "compact" storage would 'unshare'
attributes.

    Minor code cleanups, etc.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-18 20:59:28 -05:00
Quincey Koziol
5865018c85 [svn-r13073] Description:
Verify H5Aget_num_attrs() works correctly for new object header format.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-18 16:25:05 -05:00
Quincey Koziol
9769d008b0 [svn-r13072] Description:
Push support for shared attributes into more dark corners of the "dense"
attribute storage support.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-18 16:06:44 -05:00
James Laird
f327d12ebd [svn-r13070] Added shared message example program in hdf5/examples.
Also cleaned up one old API routine in H5Ppublic that isn't used.

Tested on smirom and kagiso.  More testing to follow.
2006-12-18 14:23:41 -05:00
James Laird
e100695eb0 [svn-r13068] Ran bin/reconfigure. Some of the scripts have been changed or haven't
been run in a while, so many of the source files were updated with
tracing macros, etc.  No code changes by me.

Tested on kagiso and smirom.
2006-12-18 14:16:17 -05:00
Quincey Koziol
ddbc06fce6 [svn-r13067] Description:
Add [quite] limited ability to update (ie. write) data for objects in
fractal heap.  Limited to just updating objects in managed heap blocks (i.e.
not 'tiny' or 'huge' objects) and must be updated with data of the same length
as the object in the heap.  Updating objects in compressed heaps does work
though [as long as the data isn't 'tiny' or 'huge'].
    Needed for changing the data value or the name of an attribute that is
stored in dense or shared storage.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-18 12:52:43 -05:00
James Laird
9236c9a148 [svn-r13065] Added support for copying shared messages (including turning unshared
messages to shared messages and vice versa).

Extended objcopy test to test all "permutations" of shared/unshared and
new/old group format.  If this proves to take a long time to test, I'll
go back and have it run fewer tests when HDF5_TEST_EXPRESS is enabled. 

Tested on smirom, kagiso, copper, and Windows.
2006-12-15 16:28:17 -05:00
James Laird
57a786d9c0 [svn-r13063] Cleaned up some memory issues when copying, in preparation for checking in
code to copy shared messages.  Should be fewer memory leaks and fewer
"uninitialized memory reads."

Tested on kagiso, smirom, and Windows.
2006-12-14 13:46:51 -05:00
Quincey Koziol
d694a6897c [svn-r13058] Description:
Clean up some shared message operations and other minor tweaks, in the
process of trying to solve the messy way that shared object header messages
are implemented in general (not James' work - which is fine :-)

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    AIX/32 5.? (copper)
2006-12-12 22:19:43 -05:00
James Laird
bcc000dd8a [svn-r13057] Added a copy_file callback for datatype messages. This sets their location
in the destination file, fixing a bug in the (not yet checked-in)
shared message copying changes.

Tested on kagiso, smirom, copper, and Windows.
2006-12-12 16:41:42 -05:00
Quincey Koziol
e9522de4e1 [svn-r13056] Description:
Add H5SM_type_shared() internal routine to determine if a particular
type of header message is sharable in a file.

    Correct off-by-one error in computing B-tree record size for densely
stored attributes' name index.

    Further progress toward supporting shared attributes in dense storage.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-12 15:28:48 -05:00
James Laird
3a36c62617 [svn-r13052] Fixed a bug that occured while eliminating "gaps" in object headers when
the gap came immediately before a null message.

Tested on smirom, kagiso, and copper.
2006-12-12 12:12:51 -05:00
Quincey Koziol
bda52fdd68 [svn-r13051] Description:
Minor code neatening, before making snapshot...

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-12 10:10:57 -05:00
Quincey Koziol
9c167bcfa7 [svn-r13048] Description:
Set up tests for next phase of testing dense attribute operations, with
shared attributes.

    Other minor code cleanups...

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 21:10:05 -05:00
Quincey Koziol
2f665b89ce [svn-r13047] Description:
Add "attribute exists" internal routine to make verifying that an attribute
with the same name doesn't already exist easier.

    Tweak "trace" script to produce more whitespace in H5TRACE macros, in order
to make them easier to read.

    Minor other whitespace cleanups

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 20:49:59 -05:00
Quincey Koziol
f98b337a92 [svn-r13046] Description:
Minor editing & code cleanups.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 19:57:10 -05:00
Quincey Koziol
a867b8f5fd [svn-r13045] Description:
Switch from using H5L_index_t/H5L_INDEX_<foo> to H5_index_t/H5_INDEX_<foo>
in order to accommodate indices on aspects of attributes as well as links.

    Add basic support for deleting attributes in dense storage (needs more
support/tests for shared attributes in dense storage still).

    Misc. cleanups, etc.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 19:42:19 -05:00
Quincey Koziol
dc73eca159 [svn-r13041] Description:
Migrate "internalish" attribute operations into new source code file.

    Add test & basic support for opening attributes in dense storage (shared
attributes not tested or supported yet).

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-11 14:02:38 -05:00
Quincey Koziol
14e9b46ca2 [svn-r13037] Description:
Move attribute creation code out of H5Omessage.c and into H5Oattr.c

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-12-08 17:05:52 -05:00
Raymond Lu
37aa258534 [svn-r13035] Fixed a small problem in Line 782 - buf[6] should be set to 0, too. 2006-12-08 15:27:21 -05:00
Quincey Koziol
978c9c9d93 [svn-r13034] Description:
Take out separate memory type in the file for SOHM objects and create
aliases for existing memory types for SOHM use.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-12-08 14:44:20 -05:00
Quincey Koziol
7b368f006e [svn-r13028] Description:
Add first pass of "dense" attribute storage to objects.  Lots of parts of
this are stubbed out, but all the tests are passing and I'll work on the corner
cases soon.

    Eliminated several unused parameters from object header message callback
routines.

    Other, miscellaneous code cleanups, etc. (and probably some things I've
forgotten about... :-)

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-06 17:19:52 -05:00
Quincey Koziol
a00d43c431 [svn-r13022] Description:
Fix error where message type was being cleared before it was checked.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-04 13:24:58 -05:00
James Laird
fa41ef4985 [svn-r13021] Cleaned up some mismatched types that were causing errors on copper in
64-bit mode.

Tested on copper.
2006-12-04 12:56:10 -05:00
Quincey Koziol
a21800d2f2 [svn-r13020] Description:
Make number of attributes tracking in object header prefix "live"

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-04 12:32:43 -05:00
Quincey Koziol
c76724db39 [svn-r13019] Description:
Further simplifications and cleanups to object header message code.

    Also, some changes to the "iterate" routines, in order to not override
the return value from the iterator callback routine.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-12-04 12:09:17 -05:00
Quincey Koziol
06ba931a95 [svn-r13016] Description:
Finish moving object header message routines into their own source code
module, along with renaming them to have "H5O_msg_" prefix...

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-04 09:34:10 -05:00
Quincey Koziol
304accfb96 [svn-r13015] Description:
Migrate more object header routines to use the H5O_msg_ prefix and put
them into the src/H5Omessage.c code module.

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-04 06:25:01 -05:00
Quincey Koziol
9f39e59d91 [svn-r13012] Description:
Refactor object header code to separate process of creating an object
header message from the process of writing to an existing one.

    Start renaming operations that deal with object header messages to have
"H5O_msg_" prefix...

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-03 10:29:41 -05:00
James Laird
cf92545670 [svn-r13011] Remove some // comments that were making pgcc unhappy.
Tested on heping; no significant changes.
2006-12-02 16:25:28 -05:00
James Laird
87db6fed4f [svn-r13010] Cleaned up warnings in H5SM* files.
Cleaned up all warnings on kagiso.  Tested on kagiso and copper.
2006-12-01 20:32:31 -05:00
James Laird
f002b93579 [svn-r13006] Added checksumming to shared message metadata.
Tested on kagiso, currently testing elsewhere.
2006-12-01 12:00:12 -05:00
James Laird
772730f4d7 [svn-r13004] Much improved shared object header message test, along with some bug fixes
to make the test pass.

These changes involve changes to the file format of SOHMs, but that's okay
because nobody should have been using SOHMs yet anyway.

Tested on Windows, kagiso, copper, and heping
2006-12-01 10:51:42 -05:00
Quincey Koziol
27c0fb2220 [svn-r13002] Description:
Fix problem with copying objects when the dataset to copy has an "older"
version of the layout message and needs to compute the size of the dataset's
storage after the dataspace information is available.

    Minor random cleanups also...

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Too minor/weird to test w/h5committest...
2006-11-30 16:38:30 -05:00
Raymond Lu
ce7f9328b6 [svn-r13001] Enabled CORE file driver to read or write an existing file depending
the setting of backing store through H5Pset_core_fapl and file open
flag.  Added test cases in vfd.c.
2006-11-30 15:49:01 -05:00
Quincey Koziol
fc57c3b840 [svn-r12997] Description:
Rename too generic "H5O_FLAG_<foo>" flags that are used as flags for
header messages to "H5O_MSG_FLAG_<foo>", in order to make their use clearer.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
2006-11-29 15:14:20 -05:00
Quincey Koziol
ce05f32a3d [svn-r12995] Description:
Make the memory size of the max. compact & min. dense attribute storage
variables align with the property list size, instead of the size on disk, to
better handle big-endian machines.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-28 23:44:28 -05:00
Quincey Koziol
2f3344a049 [svn-r12994] Description:
Propagate object creation properties up into group, dataset and named
datatype property lists, when those property lists are retrieved for
existing objects in a file.

    Also, add H5Tget_create_plist() API routine, to allow named datatype
property lists to be retrieved for named datatypes.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-28 23:13:02 -05:00