Commit Graph

1064 Commits

Author SHA1 Message Date
Allen Byrne
556ff06975 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'bd85e57904f1f943774bb99ea5e8b0d074db0edb':
  tools/test/h5diff/testh5diff.sh.in:          Add code to delete copies of test .h5 files copied from          tools/testfiles/vds to tools/test/h5diff/testfiles when running          "make check" for an in-source build.
2017-01-13 10:57:26 -06:00
lrknox
8452976de5 tools/test/h5diff/testh5diff.sh.in:
Add code to delete copies of test .h5 files copied from
         tools/testfiles/vds to tools/test/h5diff/testfiles when running
         "make check" for an in-source build.

    tools/test/misc/testh5repart.sh.in:
         Change the name of the temporary test directory from "testfiles"
         which is also used for 2 h5mkgrp test files under source control to
         "testrepart" to avoid deleting source controlled files when running
         "make check" in the source directory.

    Fix test scripts that remove source-controlled files during "make check" when run in-source.
    Fix test scripts that don't remove test files because they add files to test directories but don't remove them if the build directories are the same as the source directory.

    Fix any test source file or Makefile.am files for tests that leave data files are removed by neither "make check" nor "make distclean".
2017-01-12 22:20:11 -06:00
Allen Byrne
244faaa0d0 HDFFV-10094: upgrade cmake command conventions
Also converted tests to use macros
2017-01-11 14:02:34 -06:00
Allen Byrne
e1bcae8a6a Update cmake min version and cmake command convention 2017-01-10 17:10:03 -06:00
Binh-Minh Ribler
7aff4266f8 Description:
Added H5LaccProp.[h,cpp].
2017-01-03 22:17:49 -06:00
Binh-Minh Ribler
64084aa6da Removed commented section left in by mistake. 2017-01-03 08:57:20 -06:00
Binh-Minh Ribler
565aa10d8d Purpose: Add more tests
Description:
    Added more tests for the new constructors that replaced openXxxType()
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2017-01-03 07:53:54 -06:00
Binh-Minh Ribler
cd3bd5576f Purpose: Add new wrappers
Description:
    Added wrappers H5Location::exists() for H5Lexists.
    Added wrapper H5Object::objVersion() to return the header version
        of an HDF5 object.
    Added new class LinkAccPropList to be used by H5Location::exists()
    Added new exception: ObjHeaderIException for H5Object::objVersion()
    Rearranged source files in Makefile.am
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-12-28 08:44:01 -06:00
Binh-Minh Ribler
e05da1b533 Description:
Removed commented out code and fixed miscellaneous typos.
Platforms tested:
    Linux/32 2.6 (jam) (very minor)
2016-12-23 13:24:45 -06:00
Binh-Minh Ribler
798cdad29a Purpose: Improvement for HDFFV-10004
Description:
    When adding wrappers for H5Lexists, a new class, LinkAccPropList, was
    added to the C++ API, triggered complicated circular dependencies.  Thus,
    some improvement was made to resolve the problems.
    - Replaced existing functions openXxxType with individual type constructors
      + Added individual XxxType constructors to replace the existing functions
        openXxxType because it's rather awkward to use these functions.
      + Moved openXxxType from H5Location back to CommonFG
      + Put back CommonFG as a baseclass of Group for openXxxType functions.
      + This replacement should improve usability and prevent the problem of
        circular dependencies.
    - Removed overloaded constructor that takes an Attribute when there is
        already one that takes H5Location because Attribute inherits from
        H5Location now.
Platforms tested:
    Linux/32 2.6 (jam)
    Darwin (osx1010test)
    Linux/64 (platypus)
2016-12-19 00:34:18 -06:00
hdftest
e0b353b6f5 Snapshot version 1.9 release 235 2016-12-16 15:23:58 -06:00
Quincey Koziol
64a339183f Bring SWMR support in to the main development branch. (Finally!) More tests
and the tool and API wrappers will be coming in over the weekend.
2016-12-02 08:07:04 -08:00
Binh-Minh Ribler
51ea7245df Description:
Removed H5_NO_NAMESPACE from the examples.  They were missed from the
        previous cleanup.
    Platforms tested:
        Linux/32 2.6 (jam)
        Linux/64 (platypus)
2016-11-14 16:04:27 -06:00
Quincey Koziol
bb6cb6adb0 Code style and warning cleanups, from revise_chunks branch. 2016-11-06 12:08:19 -08:00
Binh-Minh Ribler
889d7fd733 Description:
- In the test for HDFFV-9758, a pragma pack(1) caused failure on Emu
      because Sparc cannot access misaligned data.  Changed it to pack() to
      do the default alignment.
    - Added DOXYGEN_SHOULD_SKIP_THIS blocks to private elements to prevent
      warnings from doxygen.
Platforms tested:
    SunOS 5.11 (emu)
    Linux/32 2.6 (jam)
2016-10-26 14:16:24 -05:00
Binh-Minh Ribler
a903cbafa8 Description:
Removed obsolet macros from C++ API:
	H5_NO_NAMESPACE, H5_NO_STD, __cplusplus
    Leave OLD_HEADER_FILENAME because iostream.h might still be in use,
    until further checking is done.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
    Jelly
2016-10-19 15:50:17 -05:00
Binh-Minh Ribler
14b1e13e80 Description:
Fixed typo that caused daily test failed when --enable-deprecated-symbols
    is used.  Also, removed a commented-out function.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus) with --enable-deprecated-symbols
2016-10-14 12:02:02 -05:00
Binh-Minh Ribler
ef52b96a9a Description:
Removed commented out lines.
Platform tested
    Jam (only comments)
2016-10-14 12:02:02 -05:00
Binh-Minh Ribler
d26c3bef4d Purpose: Fix bug HDFFR-9920 cont.
Description:
    Added new test file titerate.cpp.
2016-10-14 12:02:02 -05:00
Binh-Minh Ribler
43dd56f0a0 Purpose: Updated documentation
Description:
    Revised class brief description and other comments for up-to-date info.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-10-14 12:02:01 -05:00
Binh-Minh Ribler
4fc6f27a5e Purpose: Fix bug HDFFR-9920 cont.
Description:
    Adding user's test revealed a flaw in the fix.
    Moved CommonFG's functions in Group to H5Location, so that they
    could be called by objects that can be used to specify a location
    Also, rearranged many "#include" header files to resolve conflicts.

Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-10-14 12:02:01 -05:00
Allen Byrne
3ee36553b9 Add support for namespace and add tools to binaries config 2016-10-14 11:22:22 -05:00
lrknox
6cb0d90338 Snapshot release: increment version. 2016-10-01 09:41:26 -05:00
Binh-Minh Ribler
478f771243 Purpose: Code cleanup
Description:
    - Used FP_EPSILON in comparing float values to verify read data
    - Casted C macro to fix mismatched types in verify_val calls
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-09-01 22:14:22 -05:00
Allen Byrne
9842d2ae5f Add VFD name to test folder 2016-09-01 11:08:18 -05:00
Binh-Minh Ribler
b1c4fd77d9 [svn-r30311] Purpose: Fix bug HDFFR-9920 cont.
trunk:
Description:
    Continued rearranging the classes to model the relationship of HDF5
    objects more accurately.  The changes included:
    - in the baseclass list of Attribute, changed "public IdComponent" to
      "public H5Location", because location sometime can be specified with
      attribute
    - moved H5A wrappers in H5Location to H5Object because H5A functions
      can't be called on attribute id
    - removed the stubs Attribute::iterateAttrs and Attribute::renameAttr
    - removed Attribute::getFileName and Attribute::flush, because
          H5Location has them
    - result of the modified partial class diagram, regarding Attribute

                                IdComponent
                                     |
                                H5Location   AbstractDs
                                /       \   /
                        H5Object     Attribute
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-22 01:29:29 -05:00
Binh-Minh Ribler
c78f1ec882 [svn-r30309] Purpose: Fix bug HDFFR-9920
Description:
    Rearranged the classes to model the relationship of HDF5 objects more
    accurately.  The changes included:
    - moved CommonFG's methods to Group
    - removed CommonFG from Group's base class list
    - removed CommonFG from H5File's base class list and changed
      "public H5Location" to "public Group" in the base class list
    - CommonFG became unused
    - result of the modified partial class diagram:

                                IdComponent
                                     |
                                H5Location
                                /
                        H5Object
                           |
                        /  /  \
                DadaType Group DataSet
                          |
                        H5File
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-19 23:34:26 -05:00
Binh-Minh Ribler
ae0b749012 [svn-r30279] Purpose: Code improvement (HDFFR-9725)
Description:
    Removed deprecated functions in previous releases due to missing const.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-12 01:55:43 -05:00
Binh-Minh Ribler
b3017997a8 [svn-r30272] Purpose: Code improvement
Description:
    - Added "const" to arguments that should be const
    - Added "const" to const functions, i.e., function that don't change
      the objects they operate on.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-09 00:29:50 -05:00
Allen Byrne
e55844b752 [svn-r30237] HDFFV-9939: Change cmake commands to reduce POST_BUILD custom commands. Fixes possible overruns on windows command lines. 2016-08-01 12:35:00 -05:00
Quincey Koziol
d3b724f86a [svn-r30201] Description:
Switch test framework to dynamically allocate the testing array, and
expand the length of the description field.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-07-18 17:36:44 -05:00
Larry Knox
3b507bb8c4 [svn-r30058] Correct typo in compile scripts that causes dropping of filename in -o outfile.
Addresses HDFFV-9530 and HDFFV-9938.
2016-06-08 15:14:32 -05:00
Allen Byrne
74f3326a67 [svn-r29862] Convert source list names from *_SRCS to *_SOURCES.
Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
2016-05-04 10:06:05 -05:00
Binh-Minh Ribler
0d5910683d [svn-r29786] Purpose: Add new wrapper
Description:
    Added wrapper for H5Tset_nbit: void DSetCreatPropList::setNbit() const.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-04-25 01:09:46 -05:00
Binh-Minh Ribler
32bdd82cc8 [svn-r29782] Purpose: Code improvement
Description:
    - Removed ArrayType::rank and ArrayType::dimensions and modified the methods
      ArrayType::getArrayNDims and ArrayType::getArrayDims to always call the
      C functions to get the rank and dimensions.
    - Overloaded ArrayType::getArrayNDims and ArrayType::getArrayDims to provide
      const version and marked the non-const version deprecated.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-04-24 10:52:09 -05:00
Binh-Minh Ribler
997392079b [svn-r29766] Description:
- Changed object in catch statements to reference (left over from previous)

Platforms tested:
    Linux/32 2.6 (jam) (very minor)
2016-04-22 15:32:18 -05:00
Binh-Minh Ribler
c37607eb58 [svn-r29759] Purpose: Code improvements
Description:
    - Changed object in catch statements to reference
    - Replaced old-style casts or reinterpret_cast with static_cast
    - Removed unused name H5Library::need_cleanup
    - Removed Exception::printError from documentation
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-04-22 06:22:34 -05:00
Larry Knox
f5234cd194 [svn-r29379] Add individual LT_VERS_* variables for wrapper libraries: c++, fortran, java, hl, hl/c++, hl/fortran to so that the shared object version numbers can be incremented independently.
Disabled auto-increment of shared object version numbers by h5vers.

Files modified:
    config/lt_vers.am
    java/src/jni/Makefile.am
    hl/src/Makefile.am
    hl/c++/src/Makefile.am
    hl/fortran/src/Makefile.am
    c++/src/Makefile.am
    bin/h5vers
    fortran/src/Makefile.am
2016-03-09 13:55:31 -05:00
Binh-Minh Ribler
ab4c2402f1 [svn-r29362] Description:
Removed another left-over commented-out line.
Platforms tested:
    Linux/64 (platypus) - very minor
2016-03-08 22:46:24 -05:00
Binh-Minh Ribler
20bfdeb2c1 [svn-r29361] Purpose: Correction
Description:
    Replaced static_cast with reinterpret_cast for "void *".
    Removed some commented-out old code.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-03-08 22:30:02 -05:00
Binh-Minh Ribler
116eed3ebd [svn-r29340] Purpose: Code cleanup
Description:
    - Removed many warnings:
        warning: use of old-style cast
        warning: enumeration value ‘H5D_VIRTUAL’ not handled in switch
        warning: comparison between signed and unsigned
      There are others of the same warnings and they will be taken care of
      in the next release.
    - Made some code reuse between overloads
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-03-08 07:23:54 -05:00
Binh-Minh Ribler
36c4634606 [svn-r29322] Purpose: Remove obsoletes
Description:
    Removed obsolete functions from the documentation.  They are still
    in the code, however, until the next two releases, just in case.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-03-07 16:02:17 -05:00
Binh-Minh Ribler
b346cb0599 [svn-r29306] Purpose: Add function
Description:
    Added member function ArrayType::operator= because ArrayType has
    pointer data members.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-03-07 10:42:30 -05:00
Allen Byrne
63249be0e1 [svn-r29226] HDFFV-9552: merge in java code. 2016-02-28 21:43:00 -05:00
Binh-Minh Ribler
72bc67f464 [svn-r29004] Description:
Removed extra ';'.
Platform tested
    jam (very minor)
2016-01-28 11:26:08 -05:00
Binh-Minh Ribler
a7ef06d593 [svn-r28906] Description:
Added c++/test/tarray.cpp.
2016-01-15 10:57:00 -05:00
Binh-Minh Ribler
0d68aa89ce [svn-r28905] Purpose: Fix user reported problem
Description:
    User Adam Rosenberger reported a failure when using the member function
    AbstractDs::getArrayType().  This problem was caused by missing
    initialization of the ArrayType's members in some cases.
Solution:
    - Added ArrayType::setArrayInfo() to retrieve rank and dimensions of
      an array and store them in memory for easy access.
    - Re-factored a few functions to use the new function.
    - We'll give him 1.8.16 patch
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-01-15 10:53:33 -05:00
HDF Tester
6d8b831b31 [svn-r28730] Snapshot version 1.9 release 233 2015-12-27 23:20:23 -05:00
Jerome Soumagne
2094d86461 [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly and fix misuse of hbool_t in various places

Fix initialization of H5Pgcpl/ocpl structs in property decoding routines

Tested on:
    Linux/32 (jam)
    Linux/64 (platypus)
    Linux/PPC64 (ostrich)
    MacOSX/64 10.11
2015-10-20 01:28:17 -05:00
Binh-Minh Ribler
bd995868ee [svn-r28047] Purpose: Fix memory leaks
Description:
    - Implemented the friend function
        void f_PropList_setId(PropList* plist, hid_t new_id)
      to work around the same problem described in trunk r26655, for the
      API DataSet::getCreatePlist()
    - Cleaned up some comments and obsolete functions
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2015-10-12 23:57:28 -05:00