1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0
2) Minor fixes to test/fheap.c that somehow were missed from last check in. See pull request #396 review comments.
* commit 'ccb4e9ed9a5e0af27db9f1504a628e35d7f4cf92': (27 commits)
Removed commeted out code from H5C_dump_coll_write_list()
Checkin of fix for CGNS bug (https://jira.hdfgroup.org/browse/HDFFV-10055).
HDFFV-10143 add missing javadoc param
Add missing test status
Fix CMake regex commands
Modify test/fheap.c to run with various file space strategies and/or page buffering Modify test/fheap.c to run with different combinations of file space strategies and page buffering only when ExpressMode is 0 (HDF5TestExpress is 0). Tested on ostrich, platypus, mayll, emu, osx1010test, quail, kite, kituo.
Updated the H5L.c error message after additional thought. Fix for HDFFV-10141.
Updated an error message in H5L.c to be more helpful. Fixes HDFFV-10141.
Re-enabled fixed array index testing in the test_random_rank4_vl() test in test/set_extent. This was fixed some time ago, but the test was never re-enabled for that index type.
Fix typo deletion
HDFFV-10143 Update new feature section.
HDFFV-10143 clean up format and function return
HDFFV-10143 Add plugin APIs to Java interface
Update with checks for index bounds
Update tools issues
HDFFV-10143 fix use before set
HDFFV-10143 surround will fail with try block
HDFFV-10143 typo cleanup
HDFFV-10143 typo removed
Fix code error and use H5PL_MAX_PATH_NUM in test
...
* commit 'eb75dc1bb02e13902d73a36caafe763eea585d02':
Removed commeted out code from H5C_dump_coll_write_list()
Checkin of fix for CGNS bug (https://jira.hdfgroup.org/browse/HDFFV-10055).
* commit 'b3ff39585c3f8e6e9096fc84f02dd049f0d3ae36':
Modify test/fheap.c to run with various file space strategies and/or page buffering Modify test/fheap.c to run with different combinations of file space strategies and page buffering only when ExpressMode is 0 (HDF5TestExpress is 0). Tested on ostrich, platypus, mayll, emu, osx1010test, quail, kite, kituo.
(https://jira.hdfgroup.org/browse/HDFFV-10055).
Briefly, in H5C_collective_write() in H5Cmpio.c,
the metadata cache attempts to perform a collective
write of metadata cache entries.
This worked fine as long as all processes had at
least one entry to write.
However, when the process has no entries, the
function tries to participate in the collective write
by calling MPI_File_set_view(),
MPI_File_write_all() and then MPI_File_set_view()
again, to match the calls in H5FD_mpio_write().
After pull request 183, the CGNS test benchmark_hdf5
started failing. On investigation, I determined that
the failure occurred in the first call to MPI_File_set_view()
in the "no data to write" path through H5C_collective_write().
Note that pull request 183 did not create the problem,
it only exposed it. The bug can be observed after pull
request 182 if one executes the CGNS progam
src/ptests/benchmark_hdf5 with 90 processes.
The problem appears to have been that the calls to
MPI_File_set_view() in H5C_collective_write() and
H5FD_mpio_write() were using different values for the
info parameter. I patched the problem by adding a
MPI specific VFD call allowing me to get the MPI_Info
used in H5FD_mpio_write() for use in
MPI_File_set_view() calls in H5C_collective_write().
Tested serial & parallel, debug & production on
Jelly.
* commit 'a4038aed6e895b9d1e686073c135f8aaacc9adab': (21 commits)
Fix typo deletion
HDFFV-10143 Update new feature section.
HDFFV-10143 clean up format and function return
HDFFV-10143 Add plugin APIs to Java interface
Update with checks for index bounds
HDFFV-10143 fix use before set
HDFFV-10143 surround will fail with try block
HDFFV-10143 typo cleanup
HDFFV-10143 typo removed
Fix code error and use H5PL_MAX_PATH_NUM in test
HDFFV-10143 Cleanup due to comments
HDFFV-10143 remove debugging output
HDFFV-10143 change h5PLget to use buffer like H5Iget_name
HDFFV-10143 change put to replace and add const
HDFFV-10143 Use Windows A version of ExpandEnvironmentStrings
Remove redundant code
HDFFV-10143 Fix initial issues from review
HDFFV-10143 add APIs to manipulate plugin path table
Remove duplicated paths, add new paths
HDFFV-10143 add APIs to manipulate plugin path table
...
Modify test/fheap.c to run with different combinations of file space strategies and page buffering
only when ExpressMode is 0 (HDF5TestExpress is 0).
Tested on ostrich, platypus, mayll, emu, osx1010test, quail, kite, kituo.
* commit '1e0ecb4481e226239c1fd51bd214bd7e7490805d':
Fix typo deletion
HDFFV-10143 Update new feature section.
HDFFV-10143 clean up format and function return
HDFFV-10143 Add plugin APIs to Java interface
Update with checks for index bounds
Update tools issues
HDFFV-10143 fix use before set
HDFFV-10143 surround will fail with try block
HDFFV-10143 typo cleanup
HDFFV-10143 typo removed
Fix code error and use H5PL_MAX_PATH_NUM in test
HDFFV-10143 Cleanup due to comments
HDFFV-10143 remove debugging output
HDFFV-10143 change h5PLget to use buffer like H5Iget_name
HDFFV-10143 change put to replace and add const
Remove redundant code
HDFFV-10143 Use Windows A version of ExpandEnvironmentStrings
HDFFV-10143 Fix initial issues from review
Remove duplicated paths, add new paths
HDFFV-10143 add APIs to manipulate plugin path table
* commit 'b56fb149c9a3c9dca11b406b7a2488f0c93ee187':
Updated the H5L.c error message after additional thought. Fix for HDFFV-10141.
Updated an error message in H5L.c to be more helpful. Fixes HDFFV-10141.
* commit '9876155d3fdb073dd3769f18665c86d04cda4806':
Updated the H5L.c error message after additional thought. Fix for HDFFV-10141.
Updated an error message in H5L.c to be more helpful. Fixes HDFFV-10141.
* commit '60bb3fd1108e2006a79b008d031a0f68a1e6b393':
Re-enabled fixed array index testing in the test_random_rank4_vl() test in test/set_extent. This was fixed some time ago, but the test was never re-enabled for that index type.
* commit 'f060e05999849c1eb3ef653c08977e4b154749d8':
Re-enabled fixed array index testing in the test_random_rank4_vl() test in test/set_extent. This was fixed some time ago, but the test was never re-enabled for that index type.
* commit 'd6ea49f5cbcaa852cd0caf34278ec61108667bc3':
Switch to using flag in signal handler, to trigger dropping out of main loop and shutdown cleanly, instead of calling leave() from the signal handler.
Fix HDFFV-8089 Description: Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated data structure but not caught because the case of H5D_CHUNK_DEBUG being defined was never tested. It was commented out. I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* commit 'd522632b9e1f1d88db2117e89f3caba0dc4cf38b':
Switch to using flag in signal handler, to trigger dropping out of main loop and shutdown cleanly, instead of calling leave() from the signal handler.
* commit 'd522632b9e1f1d88db2117e89f3caba0dc4cf38b':
Switch to using flag in signal handler, to trigger dropping out of main loop and shutdown cleanly, instead of calling leave() from the signal handler.
Fix HDFFV-8089 Description: Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated data structure but not caught because the case of H5D_CHUNK_DEBUG being defined was never tested. It was commented out. I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* commit '1e4b2588b671a2172827bb422aee9ba96c0320b6':
Switch to using flag in signal handler, to trigger dropping out of main loop and shutdown cleanly, instead of calling leave() from the signal handler.
* commit '6387f7099d22c66dab415c57f9fd547eb86e4ad5':
Small corrections to DOPYING file.
Add new file COPYING_LBNL_HDF5.
Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries"
Add LBNL license file and modify COPYING file accordingly.
Omnibus checkin for several relatively minor modifications:
* commit '2412158ed8326a3f3d62fbd947e470667d0b5951':
Add new file COPYING_LBNL_HDF5.
Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries"
Add LBNL license file and modify COPYING file accordingly.
Omnibus checkin for several relatively minor modifications:
Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release.
Fix HDFFV-8089 Description: Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated data structure but not caught because the case of H5D_CHUNK_DEBUG being defined was never tested. It was commented out. I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
Fix HDFFV-8089
* commit '52f8c2ed494ea1b89374981ecc6901abe8fd5fed':
Fix HDFFV-8089 Description: Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated data structure but not caught because the case of H5D_CHUNK_DEBUG being defined was never tested. It was commented out. I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* commit '194f604ad04ec976a1d761090aa892f9f28514c3':
Small corrections to DOPYING file.
Add new file COPYING_LBNL_HDF5.
Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch. Entries"
Add LBNL license file and modify COPYING file accordingly.
Omnibus checkin for several relatively minor modifications:
