Commit Graph

16607 Commits

Author SHA1 Message Date
Allen Byrne
635e8c5377 merge from develop and apply HDFFV-8611 2017-05-24 15:00:51 -05:00
Allen Byrne
206c4a43e8 HDFFV-8611 add autotools test 2017-05-24 14:35:39 -05:00
Allen Byrne
52f5c1b14f Remove obsolete function 2017-05-24 14:35:24 -05:00
Allen Byrne
40b51136a2 HDFFV-8611 change h5repack to save the root group creation order
Added test and new arguments to control the the input file parsing.
2017-05-24 14:34:28 -05:00
Allen Byrne
c9eedcb825 Merge pull request #528 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit 'a4a1a93e56d282611a800319cef8487a3449ab56':
  HDFFV-9055 Correct file generator
  Added note about 9055 and 10128, 9995 not needed
2017-05-19 13:39:20 -05:00
Allen Byrne
a4a1a93e56 HDFFV-9055 Correct file generator 2017-05-18 15:35:05 -05:00
Allen Byrne
b81767d620 Added note about 9055 and 10128, 9995 not needed 2017-05-18 09:15:27 -05:00
Allen Byrne
303067fe0b Merge pull request #522 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit '8dd40ba371f3a299ed98ab8e7e7f34f967e91d55':
  Move declaration before executable statement
  HDFFV-9055 regenerate file for 1.10
  HDFFV-9055 add test files
  HDFFV-9055 Handle H5T_ARRAY types Create variables just for diff_array function Whitespace updates
  HDFFV-10128 Fixed string length with no null fixed
  HDFFV-9995 Clarify help text
2017-05-17 16:16:33 -05:00
Allen Byrne
8dd40ba371 Move declaration before executable statement 2017-05-17 16:00:54 -05:00
Allen Byrne
11edb1efd0 HDFFV-9055 regenerate file for 1.10 2017-05-17 10:30:05 -05:00
Allen Byrne
68ec8c4f6c HDFFV-9055 add test files 2017-05-17 10:20:01 -05:00
Allen Byrne
4d53a7100c HDFFV-9055 Handle H5T_ARRAY types
Create variables just for diff_array function
Whitespace updates
2017-05-17 10:17:29 -05:00
Allen Byrne
2e1b6a2a4d HDFFV-10128 Fixed string length with no null fixed 2017-05-17 10:14:53 -05:00
Allen Byrne
f3c235b0a5 HDFFV-9995 Clarify help text 2017-05-17 10:09:02 -05:00
Vailin Choi
93aa716f40 Merge pull request #520 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit '6403b313d46ec6db46fcff2aaa4a9238f8265d85':
  Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
2017-05-16 13:46:19 -05:00
Vailin Choi
6403b313d4 Merge branch 'hdf5_1_10' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into hdf5_1_10 2017-05-16 13:43:45 -05:00
Dana Robinson
6e09fa2cb2 Merge pull request #517 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10
* commit 'b74b1cd250755cbbe6ec337dc34634eb8b74b64a':
  Added a RELEASE.txt message for HDFFV-10187.
2017-05-16 12:00:52 -05:00
Vailin Choi
55e2bcedc1 Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934)
This is the similar set of changes that was checked in to 1.8 branch:
Incorporate the code changes that were missing from the original patch:
(1) Additional tests in hl/test/test_dset_opt.c
(2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty
Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
2017-05-16 09:44:11 -05:00
Dana Robinson
b74b1cd250 Added a RELEASE.txt message for HDFFV-10187. 2017-05-15 14:58:13 -04:00
Dana Robinson
0adad72813 Merge pull request #511 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5do_overwrite_1_10 to hdf5_1_10
* commit '1d786206df53942a3a3dbd538b369c94a632050d':
  Removed redundant assignement.
  Fixes the chunk overwrite bug (HDFFV-10187) and adds a new H5DO HL test.
2017-05-11 21:39:23 -05:00
Dana Robinson
1d786206df Removed redundant assignement. 2017-05-11 20:49:37 -04:00
Vailin Choi
5e203972a9 Merge pull request #509 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit '228939e7315cc9644e158fc246f4908301d77a35':
  Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
2017-05-11 13:18:13 -05:00
lrknox
228939e731 Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -
changed to H5Dopen2 to fix failure with --with-default-api-version=v16
configure option.
2017-05-11 12:11:20 -05:00
Dana Robinson
a45f5f8f53 Merge pull request #499 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10
* commit '1a4bda1bd824df2da1e8c3441881fb7fca6a4413':
  Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed the option from the CMake cache init files.
2017-05-10 09:34:57 -05:00
Vailin Choi
bbca1b6fc6 Merge pull request #500 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit 'd94405ded4451831e4fc90ceff70acbc1e6a8f9c':
  Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
  Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
  Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-10 03:28:03 -05:00
Vailin Choi
d94405ded4 Fix for HDFFV-10051
Fix missing declaration for H5D__layout_compact_dirty_test().
Tested on mayll and osx1010test.
2017-05-10 01:04:48 -05:00
Vailin Choi
10a3bbe680 Fix for the two issues reported in HDFFV-10051
Modifications made based on the review comments from pull request #494
Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-10 01:04:03 -05:00
Vailin Choi
f1c9163c91 Fix for the two issues reported in HDFFV-10051:
(1) Repeated open/close of a compact dataset fails due to the
increment of ndims in the dataset structure for every open.
--This is done only for chunked dataset via H5D__chunk_set_sizes().
(2) layout "dirty" flag for a compact dataset is not reset
properly after flushing the data at dataset close.
--Reset the "dirty" flag before flushing the message to the object header
via H5O_msg_write().
Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-10 01:03:23 -05:00
Dana Robinson
3d8416251d Fixes the chunk overwrite bug (HDFFV-10187) and adds a new H5DO HL test. 2017-05-09 19:29:44 -04:00
Larry Knox
b8d68f3160 Merge pull request #492 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '2c1e727b803203f2188c2d2854501c5a5b8efb23':
  Update one missed version string.
2017-05-05 13:48:59 -05:00
lrknox
2c1e727b80 Update one missed version string. 2017-05-05 10:50:27 -05:00
Larry Knox
9c169ec1c8 Merge pull request #489 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '5cde315a061d789ea9539265f96ec65454454983':
  Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1 release.
2017-05-05 10:29:39 -05:00
lrknox
5cde315a06 Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1
release.
2017-05-04 17:14:38 -05:00
Dana Robinson
1a4bda1bd8 Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed
the option from the CMake cache init files.

Fixes HDFFV-10184
2017-04-27 16:10:52 -04:00
Larry Knox
500fe19d36 Merge pull request #479 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit '4fb75982b1c1f896d5d42798fb5a253ffe008166':
  Change position of declaration to top of block
2017-04-27 08:56:33 -05:00
Allen Byrne
4fb75982b1 Change position of declaration to top of block 2017-04-27 08:53:57 -05:00
Vailin Choi
cb12277b5f Merge pull request #477 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit 'ae05b0c726f565a13aed9a8edeefb39299c1ca6d':
  Modifications based on pull request review. Made couple changes based on the review comments.
  Incorporate patch from GE Healthcare (HDFFV-9934) This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
2017-04-26 15:49:34 -05:00
Vailin Choi
ae05b0c726 Modifications based on pull request review.
Made couple changes based on the review comments.
2017-04-26 14:49:45 -05:00
Vailin Choi
14e9856778 Incorporate patch from GE Healthcare (HDFFV-9934)
This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
2017-04-26 14:48:17 -05:00
Dana Robinson
8f049c8736 Merge pull request #469 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10
* commit '14bc39bcb59ce36d1d2fd156afeaf3aa7bb5ad84':
  Updated bin/trace to emit errors and reordered autogen.sh processing so that script failures leave the library in a non-compilable state, making it harder to ignore errors.
2017-04-25 16:28:17 -05:00
Dana Robinson
14bc39bcb5 Updated bin/trace to emit errors and reordered autogen.sh processing
so that script failures leave the library in a non-compilable state,
making it harder to ignore errors.
2017-04-25 17:10:11 -04:00
Larry Knox
b962c7ad42 Merge pull request #467 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit 'b3fb91a932546724344205529a37226aaa34367e':
  HDFFV-10173 revert and add dynlib flags
2017-04-25 15:49:23 -05:00
Allen Byrne
b3fb91a932 HDFFV-10173 revert and add dynlib flags 2017-04-25 15:46:03 -05:00
Allen Byrne
c9779df05a Merge pull request #465 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit '545fa4028aabec0e683351762f42eb4ffa5a5b7e':
  Merge cmake h5clear test changes
  Correct name of native function
  Change signature of H5PLget_size
2017-04-25 14:32:07 -05:00
Allen Byrne
545fa4028a Merge cmake h5clear test changes 2017-04-25 09:57:21 -05:00
Allen Byrne
539f252fc8 Correct name of native function 2017-04-25 09:40:55 -05:00
Allen Byrne
2599c23164 Change signature of H5PLget_size 2017-04-25 09:40:54 -05:00
Vailin Choi
61d979c1e9 Merge pull request #461 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit '6449f650e65a212f73b8ec551b699dd9991c6dde':
  Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure
2017-04-24 18:20:09 -05:00
Vailin Choi
6449f650e6 Merge branch 'hdf5_1_10' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into hdf5_1_10 2017-04-24 18:17:29 -05:00
Vailin Choi
c40edf8c24 Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files
(1) Re-structure tests to do one "extend" action at a time
(2) Re-try test till max limit before final failure
2017-04-24 18:12:50 -05:00