Commit Graph

304 Commits

Author SHA1 Message Date
Scot Breitenfeld
0cc9b0c79f [svn-r26825] Added include for preprocessing fortran files with configure definitions 2015-04-16 13:36:34 -05:00
Larry Knox
3032f3adf3 [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure.
Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths.

Tested with h5committest.
2015-04-02 16:07:53 -05:00
Allen Byrne
99baa66184 [svn-r26699] Generators are only built static 2015-04-01 16:02:43 -05:00
Allen Byrne
45577d5693 [svn-r26660] HDFFV-9131: autotols rework
Remove CXX_CONDITIONAL
remove unneeded/obsolete sections.

h5commtitest
2015-03-30 13:55:21 -05:00
Allen Byrne
451a91e53b [svn-r26594] Merge macros and fortran changes from dual_binary feature.
Tested: local linux
2015-03-25 17:08:46 -05:00
Jerome Soumagne
1cd7c16a9d [svn-r26509] Run reconfigure after merges from autotools_rework branch. 2015-03-20 14:15:51 -05:00
Scot Breitenfeld
04a3b2a458 [svn-r26417] Removed compiler warnings from HL. HDF5-237
Tested: h5committest
2015-03-10 14:02:41 -05:00
Dana Robinson
d8e3d8e908 [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.
- Adds 'F' suffixes for most float constants.

- A few constants MUST be of type double. These now receive the long
  double L suffix and are then cast to double. I do this via a new
  H5_DOUBLE() macro which was added to H5private.h.

Fixes: HDFFV-9148

Tested on: h5committest
2015-03-01 13:48:54 -05:00
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
2015-02-27 07:50:38 -05:00
Scot Breitenfeld
2048e0bff9 [svn-r26321] Fix for HDFFV-9042.
tested: h5commit
2015-02-26 15:39:51 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Scot Breitenfeld
48d9c30923 [svn-r26294] Fix for HDFFV-9132.
tested: h5committest
2015-02-24 15:30:07 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
2015-02-16 11:17:03 -05:00
Scot Breitenfeld
7fcba33763 [svn-r26172] Fix for: HDFFV-8685 -- Have one include file to use for HL libraries
added hdf5.h to hdf5_hl.h
2015-02-13 16:32:44 -05:00
Scot Breitenfeld
9140500b86 [svn-r25631] Fix fo HDFFV-8912 2014-09-29 11:23:57 -05:00
Scot Breitenfeld
17893b24ea [svn-r25629] Fix for hdffv-8855. 2014-09-29 10:31:40 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description:
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
6d637e03f7 [svn-r25399] bug fixes where a wrong type was used instead of hid_t. 2014-07-09 12:12:38 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
2014-07-07 13:22:48 -05:00
Quincey Koziol
a613b70f93 [svn-r25197] Description:
Bring changes from hdf5_1_8_coverity branch back to trunk:

r20878:
    Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check.

r20880:
    Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom.

r20882:
    Fixes for coverity:
    1) bug #1679: remove dead code in test/mf.c
    2) bug #1680: remove dead code in tools/lib/h5diff_dset.c

r20883:
    Fix coverity issue 585

    Description:
    Changed variable "c" in processStrData in h5import.c to an int, to match fgetc
    return value, and removed call to feof, instead checking if c == EOF.

Tested on:
    MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel
    (too minor to require h5committest)
2014-05-16 22:22:51 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
2014-04-25 16:59:53 -05:00
Allen Byrne
98bbf4a36a [svn-r24948] Group tests by Common name
Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32

Tested: local linux CMake
2014-04-02 13:35:01 -05:00
Dana Robinson
d01ee66666 [svn-r24937] Adds an H5free_memory() function to the library for use with
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.

Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551

Tested on:
    64-bit Windows 7 w/ VS2012
    32-bit LE linux w/ parallel and fortran (jam)
    32-bit LE linux w/ fortran and C++ (jam)
2014-03-31 18:35:09 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1
h5committest
2014-03-31 12:07:05 -05:00
Quincey Koziol
f97d63cb95 [svn-r24869] Description:
Clean up more compiler warnings, plus merge a few Coverity bug fixes from
the hdf5_1_8_coverity branch back to the trunk:

r20877:
Purpose: Fix coverity issue 1723

Description:
Modified test_generate in hl/test_image to close file "f" before exit, even if
an error occurs.

r20879:
Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go
futher if call fails as well as empty.

r20881:
Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether
FLAG_PRINTED is TRUE.  But it had just been set to FALSE.  I took out the
condition check in the print statement.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel
    (too minor to require h5committest)
2014-03-23 01:27:57 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Quincey Koziol
164b4c7534 [svn-r24804] Description:
Brought changes from Coverity branch back to trunk, and cleaned up misc.
other warnings & formatting issues:

r20833:
Fixed Coverity 667 and 668 with real integer overflow tests this time.

r20834:
Use HDstrncpy and HDstrncat. --gh 

r20835:
Change to use strncpy - use base_len + 1 for line 156, use HDstrlen(path) + 1 for line 159

r20836:
Fixed coverity 585 by casting output of fgetc() to a char.

r20837:
Changed sprintf calls to snprintf with size 1 less than the allocated buffer to address coverity issue #967.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (too minor to require h5committest)
2014-03-15 23:44:13 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
2014-03-11 17:07:13 -05:00
Allen Byrne
a3292a77ce [svn-r24781] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
2014-03-11 16:14:57 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00
Dana Robinson
e6cace9ee4 [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.
Prep work for adding a memory free function, part of HDFFV-8551.

Tested on:
    32-bit LE linux (jam) 
        * with C++, Fortran
        * with thread safety on

    These are minor changes (almost entirely renaming foo functions
    to HDfoo) that don't change functionality.  This should not
    require a full commit test.
2013-10-30 23:20:36 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276.
Tested with h5committest and on hdf-duck.
2013-09-23 20:14:24 -05:00
Quincey Koziol
482a9c28e7 [svn-r24030] Description:
Clean up more compiler warnings.

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN
    (too minor to require h5committest)
2013-08-19 17:13:15 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers.
Tested: local linux
2013-08-19 16:49:44 -05:00
Quincey Koziol
308c378ccd [svn-r24020] Description:
Clean up compiler warnings

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-17 15:05:27 -05:00
Quincey Koziol
453f95c192 [svn-r24011] Description:
Clean up a few warnings

Tested on:
    Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-15 08:24:28 -05:00
Jerome Soumagne
345e57b0b1 [svn-r23985] Merge commit 23937 from reduce_warning branch
Remove unused param (src) and unused var (hl) warnings

Tested on koala
2013-08-09 16:06:46 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake support needed.
2013-06-10 12:46:48 -05:00
Allen Byrne
b0235a2610 [svn-r23707] Vagrind memleak: bufferes only cleaned up if there was an error. 2013-05-15 08:38:41 -05:00
Quincey Koziol
d38fe20df6 [svn-r23695] Description:
Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!)

    Merge changes from Coverity branch back to trunk:

r20684:
Fix for coverity bug #1721 which was due to the fix for coverity bug #943.

r20685:
Use HDstrncpy. --gh

r20761:
Purpose: Fix valgrind issues

Description:
Free image_data and data as appropriate in test_image.

r20762:
Purpose: Fix coverity issue 600

Description:
Add check for return value of H5O_close in H5Ocopy.  Also cleaned up various
warnings.

r20763:
Purpose: Fix valgrind issues with h5stat

Description:
Modified h5stat to free "iter" before exit, and free "hand" before exit if
parse_command_line exits directly.

r20764:
fixed coverity issues:
69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80

r20765:
Fixed coverity bug 668

Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning.

No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1.

I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program.

r20766:
Fixed coverity bug 667

Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning.

No actual integer overflow tests are performed since it's just a test program.


Tested on:
    Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
    (h5committest upcoming)
2013-05-11 10:59:48 -05:00
Quincey Koziol
5acd9c4053 [svn-r23597] Description:
Bring r20683 from Coverity branch back to trunk:

Isues 1309-1333: Changed strcpy/strcat to strncpy/strncat with maximum size expected.

Tested on:
    Max OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
2013-04-17 07:49:56 -05:00
Allen Byrne
0596de6267 [svn-r23412] Add test depends on clear test. Occasional failures. 2013-03-21 09:19:09 -05:00
Allen Byrne
aff5c20a6a [svn-r23305] HDFFV-8257: szip still used even if headers are not found. Change configure to test the result of the CHECK HEADERS call before checking for the library.
Tested: local linux, h5committest
2013-02-18 15:56:21 -05:00
Scot Breitenfeld
871b69723e [svn-r23241] Fix for: HDFFV-7596 H5DSget_scale returns size that includes NULL termination and H5DSget_label returns size
Updated tests.

Tested: jam( gnu, intel)
2013-02-10 21:06:01 -05:00
Raymond Lu
c9aad08a90 [svn-r23161] ported revisions 23146:23160 from the trunk 2013-01-14 14:45:59 -05:00
Raymond Lu
7b895e1dd8 [svn-r23149] I put more condition checks with macro when DEFLATE filter is disabled.
Tested on koala.
2013-01-10 11:04:09 -05:00
Raymond Lu
8eab66f667 [svn-r23148] I added the macro condition check for the test of direct chunk write as it uses compress2 function.
Tested on koala.
2013-01-09 16:07:27 -05:00