Commit Graph

1396 Commits

Author SHA1 Message Date
Richard Warren
0c207cd2f8 Merge pull request #704 in HDFFV/hdf5 from optimize_superblock_read to develop
* commit '3dde6d0e32461f46630f814a2fdfbd4c813703bf':
  Updated the code and RELEASE.txt note per comments from John Mainzer
  Try to address most of the issues raised by Dana in the code review
  Made edits suggested by John as part of the code review
  Update the MANIFEST and release_docs/RELEASE files
  Add a test for parallel reads of independent files using MPI subgroups
  Edits to the file open optimization and associated test code to bring them closer to the HDF5 library's unwritten coding standards.  Also bug fix to repair a hang in testphdf5.
  The initial coding for the superblock read optization
2017-10-13 07:58:46 -05:00
Richard Warren
1f0194fb64 Update the MANIFEST and release_docs/RELEASE files 2017-10-10 09:47:22 -04:00
Allen Byrne
12e4d3fd0b Add/remove test files 2017-10-03 14:37:31 -05:00
Allen Byrne
5c5533d7fd Change name for test results table 2017-09-20 14:16:31 -05:00
Binh-Minh Ribler
f1871c6ac4 Updated for C2Cppfunction_map.mht 2017-09-18 11:44:53 -05:00
Allen Byrne
539c17b2f4 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'bf570b1a7ca3b9cbd4a59f0933a19ce1bcc99103': (71 commits)
  Amend tests to explicitly use H5Dcreate2 and H5Dopen2
  Revert malloc's back to using hard-coded type for sizeof
  Minor comment refactoring
  Update documentation
  Finish up Parallel Compression test scaling work
  Partial update for scaling parallel filters tests
  Modify t_dset.c in lieu of Parallel Compression changes
  Updated H5C__flush_single_entry() in H5C.c to correct duplicate metadata write bug observed in 1.10.1.
  Amend MANIFEST
  Add test for write parallel; read serial case
  Fix uninitialized array issue in test
  Test updates
  Fix bug where incorrect amount of data was being read from the file
  Add data verification for first half of tests
  Start adding data verification
  Switch tests over to use testing macros
  Updates to parallel filters tests
  Move test files to testpar directory
  Add test file to build process
  Suggested changes from code review
  ...
2017-09-05 13:24:22 -05:00
Allen Byrne
89f65fc97e HDFFV-9774 Add enable-error-stack argument to h5diff 2017-08-31 15:58:37 -05:00
Jordan Henderson
e04817b5aa Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '593e4038b3ab474a47e468bb3478d4ae3a6820e6':
  Fix for daily test failure Fix for the compilation error from the PGI compiler.
  Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
  HDFFV-10188 force non-native type description
  HDFFV-10188 emu insists on printing non-native description
  Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
  HDFFV-10188 fix typo
  HDFFV-10188 add missing copy commands
  HDFFV-10188 Add tests and files
  HDFFV-10188 enable null space test
  HDFFV-10188 add release note
  HDFFV-10188 - Check for empty string first
  HDFFV-10188 error on NULL dataspace
2017-08-24 14:37:13 -05:00
Vailin Choi
f3b72e1bde Merge pull request #637 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '1ef8577a4aaaa4120a819ff36747fdca99abdc26':
  Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
  Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
2017-08-23 16:35:19 -05:00
Vailin Choi
b07eb6efd0 Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file
Fix H5HL_offset_into() to return error when offset exceeds heap data block size.
Also fix other places that call this routine to detect error return.
2017-08-22 01:36:20 -05:00
Allen Byrne
138c3ee366 HDFFV-10188 Add tests and files 2017-08-21 11:56:31 -05:00
Jordan Henderson
af3474f05e Amend MANIFEST 2017-08-11 14:32:00 -05:00
Jordan Henderson
c34ee0b2a5 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2017-08-11 14:25:33 -05:00
Jordan Henderson
6abd4e9d16 Move test files to testpar directory 2017-08-03 11:56:05 -05:00
Jordan Henderson
50c4bc8835 Add test file to build process 2017-08-03 10:09:47 -05:00
Vailin Choi
8b8e7ae232 Merge pull request #620 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '59e94f5009a1f738d9924be942448f8cf6355b00':
  Add h5repack tests for paged aggregation Add tests to h5repack.sh.in to verify options added for paged aggregation work as expected.
2017-08-02 01:49:42 -05:00
Allen Byrne
e1a81b17e0 HDFFV-10256 Add test 2017-08-01 13:52:10 -05:00
Dana Robinson
fd0d8738e0 Merge branch 'develop' into h5pl_commit 2017-08-01 04:12:03 -07:00
Vailin Choi
59e94f5009 Add h5repack tests for paged aggregation
Add tests to h5repack.sh.in to verify options added for paged aggregation work as expected.
2017-07-29 01:10:25 -05:00
Allen Byrne
e790a0b42d HDFFV-10246 Add check for string not null before use 2017-07-25 15:15:20 -05:00
Dana Robinson
d4234d0a98 Major rework of H5PL package code before bringing VOL changes
over.

Brings coding standards in line with the rest of the library,
enforces better software engineering principles, and makes
everything more maintainable.
2017-07-14 09:18:33 -07:00
Richard Warren
0c4c562cc5 Include code fixes and additional modifications pointed out by code reviewers 2017-07-10 16:17:26 -04:00
Vailin Choi
804a88fafd Fix for HDFFV-10160
Modifications to fix the assertion/abort failure when the application does not close the file.
2017-06-29 01:11:44 -05:00
Allen Byrne
c288898630 HDFFV-10219 - fix for native in bin file and possible non-native in h5 2017-06-15 12:19:46 -05:00
Allen Byrne
b829420a0d HDFFV-10219: Added keyword SUBSET to h5import list. 2017-06-12 12:22:52 -05:00
Allen Byrne
cdcef539a3 HDFFV-8611 change h5repack to save the root group creation order
Added test and new arguments to control the the input file parsing.
2017-05-22 13:10:40 -05:00
Allen Byrne
23d9fe2649 HDFFV-9055 add test files 2017-05-17 10:06:17 -05:00
Allen Byrne
ec0935a924 HDFFV-10186 xml test also needs endianess aware files 2017-05-10 12:45:06 -05:00
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Vailin Choi
43e03c548a Modifications based on review comments from pull request.
Made changes according to review comments and discussion with Allen.
2017-04-19 22:51:39 -05:00
Vailin Choi
b7aeefbbc9 Fix for DAILYTEST-259 h5clear test failure
Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest.
Tested on kituo, osx1010test, quail, platypus and ostrich.
2017-04-18 13:24:00 -05:00
M. Scot Breitenfeld
265950a83a updated with README changes 2017-04-11 13:16:16 -05:00
Allen Byrne
87e8da6600 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2412158ed8326a3f3d62fbd947e470667d0b5951':
  Add new file COPYING_LBNL_HDF5.
  Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries"
  Add LBNL license file and modify COPYING file accordingly.
  Omnibus checkin for several relatively minor modifications:
  Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release.
  Fix HDFFV-8089 Description:     Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated     data structure but not caught because the case of H5D_CHUNK_DEBUG being     defined was never tested.  It was commented out.     I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
2017-04-03 09:23:27 -05:00
Allen Byrne
1dee0d4627 HDFFV-10143 Fix initial issues from review 2017-03-30 12:15:25 -05:00
lrknox
8eef625ef4 Add new file COPYING_LBNL_HDF5. 2017-03-30 10:33:51 -05:00
Allen Byrne
3fcfb36748 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'd0aeefd6455d6877afd934e238362636a86e4b42':
  Final merge of page buffering branch to develop
2017-03-14 14:31:10 -05:00
Allen Byrne
2687321987 HDFFV-10138 Merge app framework to examples 2017-03-14 12:14:44 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Allen Byrne
9e75847d67 HDFFV-10128 fix string compare and add tests 2017-03-03 14:47:59 -06:00
Allen Byrne
e545f474a5 Correct filename typo 2017-02-22 08:43:34 -06:00
Allen Byrne
71cea2112f Add new cmake options file 2017-02-20 09:11:44 -06:00
Quincey Koziol
a9808853d5 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop_merge_cache_image_06 2017-01-28 23:27:08 -08:00
Quincey Koziol
1949d5756d Cache image feature and testing 2017-01-28 23:19:37 -08:00
Dana Robinson
2cac1c0637 Moved remaining SWMR-related test files to develop. 2017-01-26 14:34:12 -05:00
Allen Byrne
a8e4f6426e Add autotools version of plugin tests for UD filters 2017-01-17 17:11:27 -06:00
Allen Byrne
406db26f51 HDFFV-9994 add UD tests for tools 2017-01-17 13:46:11 -06:00
Allen Byrne
244faaa0d0 HDFFV-10094: upgrade cmake command conventions
Also converted tests to use macros
2017-01-11 14:02:34 -06:00
Binh-Minh Ribler
d6d411f0af Description:
Added
        + ./c++/src/H5LaccProp.cpp
	+ ./c++/src/H5LaccProp.h
2017-01-05 15:42:26 -06:00
Dana Robinson
e41a15b7f0 Added a missing test file needed for the flushrefresh script. 2016-12-30 10:06:07 -05:00