We don't test parallel in other GitHub actions, so this also converts the
NVHPC check to configure and build only while we discuss how we'll
test parallel HDF5 in GitHub.
There is a blocking GitHub issue to address the test failures for
HDF5 1.14.5 (#4571).
* off_t --> HDoff_t in test
* off_t --> HDoff_t in h5ls, h5dump, & h5repack
* Minor off_t tweak to configure.ac
* off_t --> HDoff_t fixes in src
This changes the type of the offset parameter in H5Pget_external()
to HDoff_t to match H5Pset_external(), along with other minor tweaks.
* off_t --> HDoff_t in C++ wrappers
* Fix off_t usage in Java wrapper
Sites like GitLab can have internal problems that return http 500
errors while they fix their problems. Some sites also return http
200 OK, which is fine.
This PR adds a config file to the markdown link check so those
are considered "passing" and don't break the CI.
The `off_t` type is only 32-bit on Windows, which makes it impossible to link to higher offsets in large files.
The `H5O_efl_entry_t` struct defines its `offset` field already as `HDoff_t`, so no additional conversion is needed.
These have been failing for a week or two for unclear reasons, both
in the Autotools and CMake. No obvious library changes triggered
this.
See GitHub issue #4539 for more info/discussion
The Julia tests will be disabled until the root cause is found.
* Fix a few function names in USAGE comments that don't match the actual
function names.
* Remove typo '['
* Switch to working url for api-compatibility-macros.html.
* point to HDFGroup repository
* updated checkout locations
* Fix incorrect and dead documentation link in
release_docs/RELEASE_PROCESS.md.
---------
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Allow HDF5_LIB_INFIX to work with DLL
* Separate individual library name into parts and add suffix option
* Java cannot use alternative names and removed extra setting
* Incorporate the underscore into the CORE name
Move without other changes:
src/libhdf5.settings.in -> src/libhdf5.settings.autotools.in
config/cmake/libhdf5.settings.cmake.in -> src/libhdf5.settings.cmake.in
* Set H5 specific vars immediately if legacy find
* Correct find process vars (vs in-line build)
* Correct SZIP find
* Everything is libaec 1.0.6 or newer
* Correct option help text
* Revert "Remove Autotools sed hack (#3848)"
This reverts commit 8b3ffdef3099d2699ec71a5f855966132b3d3c25.
* Fix libtool sed cleanup on MacOS
Convert sed -i line to sed > libtool.bak && mv libtool.bak libtool
to avoid non-portable -i option.
* Fix for github issue #1388: can't delete renamed dense attribute with corder tracking enabled
The problem occurs in step 3(b) below which will delete the attribute with corder x
from the creation order index v2 B-tree.
The rename sequence in H5A__dense_rename() occurs in the following order:
1) The old attribute with corder x was removed from the creation order index v2 B-tree
2) The new renamed attribute was inserted via H5A__dense_insert():
(a) insert the attribute with new name j into the name index v2 B-tree
(b) insert the attribute with corder x into the creation order index v2 B-tree
3) The old attribute was removed via H5A__dense_remove():
(a) remove the attribute with old name k from the name index v2 B-tree
(b) remove the attribute with coorder x from the creation order index v2 B-tree
Fix: deactivate the "corder_bt2_addr" field so that H5A__dense_remove()
won't delete the attribute with corder x from the creation order index v2 B-tree.
* Improve spec. reading superblock into cache (a little) by using v2 size
Instead of reading the absolute minimal possible, use the likely value of
a v2+ superblock w/8-byte addresses & lengths.
