Commit Graph

124 Commits

Author SHA1 Message Date
Dana Robinson
8253ab9ebf
Convert hbool_t --> bool in src (#3496)
* hbool_t --> bool in src

* Does not remove TRUE/FALSE
* Public header files are unchanged
* Public API calls are unchanged

* TRUE/FALSE --> true/false in src

* Add deprecation notice for hbool_t
2023-09-05 14:52:30 -07:00
Sean McBride
2b0badb90e
Made HGOTO_ERROR a do-while loop (#3308)
* Made HGOTO_ERROR a do-while loop
2023-08-02 08:39:15 -05:00
Sean McBride
553e1cd311
Another round of fixing -Wextra-semi-stmt warnings (#3264)
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-24 16:18:04 -05:00
Sean McBride
1903c4b1b0
Fixed more warnings about extra semicolons (#3249)
* Require semi-colon after H5_CHECK_OVERFLOW calls



Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-18 10:35:05 -05:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210)
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
2023-06-29 12:13:29 -07:00
Dana Robinson
7a44581a84
Rename HDassert() to assert() (#3191)
* Change HDassert to assert

* Fix bin/make_err
2023-06-28 07:31:56 -07:00
Dana Robinson
56513d9df7
Remove dead code behind #ifdef OLD_WAY (#3163) 2023-06-20 22:37:07 -07:00
Dana Robinson
7ecf1d09af
Convert H5F haddr_t macros to H5 (#3039)
Several macros for handling haddr_t values exist in H5Fprivate.h
and have H5F prefixes, even though they have nothing to do with
a particular file (e.g., H5F_addr_lt()).

These macros have been moved to H5private.h and renamed to have
an H5 prefix.

Affected macros:
    H5F_addr_overflow
    H5F_addr_defined
    H5F_addr_eq
    H5F_addr_ne
    H5F_addr_lt
    H5F_addr_le
    H5F_addr_gt
    H5F_addr_ge
    H5F_addr_cmp
    H5F_addr_overlap

H5F_addr_pow2 was unused and removed instead of converted.
2023-06-05 08:04:56 -07:00
Larry Knox
11dfa25910
Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
Allen Byrne
ae414872f5
Develop clang 13 format (#1933)
* Update format source to clang 13

* More format changes
2022-07-26 14:45:46 -07:00
David Young
a0445d806c
Simplify function enter macros for performance benefits (#1024)
* Take a stab at using constructors to initialize instead of
function-entry macros.  This is a work in progress.  It's good enough to
run `many_dsets`.

* Committing clang-format changes

* Add the `many_dsets` benchmark and some scripts I used on jelly for
setting up the build/test environment and for recording/flame-graphing
profiles.

* Committing clang-format changes

* Change my Makefile and environment script to work both on jelly
and on mayll (and probably on Summit).

* Disable clang-format "fix."

* Replace the `if (!H5_TERM_GLOBAL)` test in each FUNC_ENTER_ macro with
`if (true)`.

* Fix bad grammar in a comment.

* Instead of labeling the H5*__init_package routines constructors, fold
each into an initialization routine, H5*_init(), and call each of
the H5*_init() routines.  Call most of the H5*_init() routines from
H5_init_library() in an explicit order that I found out earlier by
instrumenting each __init_package routine and running the library
tests.  Roll H5FD*__init_package routines into H5FD*_init() routines.
This change ends just-in-time initialization of package dependencies by
package initializers.

Don't track in per-package variables (H5_PKG_INIT_VAR) whether each
package has been initialized.  Instead, track in a single library
variable whether the whole library is initialized or not.

Drive the initialization of packages by H5_init_library() with a table
of initializer routines.  Also drive the termination of packages by
H5_term_library() with a table.

Perform initialization as needed from FUNC_ENTER_API_INIT(err).  This
basically restores the old behavior of that macro.

Delete a bunch of #definitions in H5private.h that have fallen out of
use with these changes.

* Committing clang-format changes

* Undo the bad auto-formatting that appears to have occurred in spite
of my disabling it.  Bracket some code in /* clang-format off */ /*
clang-format on */ to prevent a recurrence.

* Remove a diagnostic abort().

* Fix a logic error: print a comma between every package terminator run,
and don't print an initial comma.

* Complete the changes I started in H5_term_library() that undo the bad
auto-formatting.

Stop tracking whether package "tops" were initialized in per-package
variables H5*_top_package_initialize_s.  H5_term_library() takes care of
that for them.

Remove H5R_top_term_package() and H5R_term_package(), they don't do
anything.

* Committing clang-format changes

* NFCI.  Simplify macro text: replace `if (true) {` with `{`.

* Fix formatting and suppress clang-format on a longer range.

* Quiet some unused label, unused variable complaints that cropped up
after I simplified the FUNC_ENTER_ macros for the sake of performance.

* Committing clang-format changes

* Delete some programs and scripts that don't belong in the pull request.

* Use the right function-entry macro.

* Use a sensible format and disable auto-formatting.

* Stop calling do-nothing initializer H5FS_init().  Delete it.

* Document what changes to make if the default VFD changes.

* While I am here, change an `await_prior` flag on the terminator table
to `true` to match the previous, non-table-driven code that was here.
Found the oversight making the following changes:

NFCI: insert an empty line and copy over slightly-edited comments from
the previous version, where those comments still correctly explained how
library termination operated.

* NFCI: lower a staircase.

* Replace every occurrence of FUNC_ENTER_NOAPI_INIT(...) with H5_PUSH_FUNC
since that is all that that macro does any more.

Quiet a bunch of new warnings by changing FUNC_ENTER_NOAPI(...) to
FUNC_ENTER_NOAPI_NOERR and removing disused `done:` labels.

* NFCI: add curly braces around a multiline statement.

* Quiet a signed/unsigned comparison warning.

* Add some documentation about library initialization and shutdown.

* Make sure that the library is initialized, or else that initialization
is already underway, before performing any VFD's initialization.

* Committing clang-format changes

* Committing clang-format changes

* Reduce differences from `develop` branch.

* Always initialize `tot_init`.

* Committing clang-format changes

* Fix typo: H5SL_init initializes skip lists, not VOL.

* Remove H5_TERM_GLOBAL test in H5T_init.  H5T_init was unusual in that
it tested H5_TERM_GLOBAL and exited early if it was set.  No other
module initializers did that, and I cannot find any reason that should
be necessary.  Tests still pass when I remove it, so away it goes.

* Use HD prefix.

* Add function header comments.

* Drop the intermediate variable, it's only used once.

* Extract subroutine `H5FDperform_init(hid_t (*init)(void))` that
initializes the library, if necessary, before calling its VFD-initializer
argument.  Use H5FDperform_init in the definition of the symbols
H5FD_<vfd> (e.g., H5FD_SEC2), which may be evaluated before the library
is initialized, like so:

```
```

I implement H5FDperform_init in its own source file, H5FDperform.c,
and exclude that file from trace processing because the `bin/trace`
cannot deal with the function-pointer type.

* Straggler from last: add new source file src/H5FDperform.c.

* Committing clang-format changes

* Add a missing file to the MANIFEST.

* Switch to FUNC_ENTER_API_NOINIT in H5FDperform_init() and hbool_t in
H5_term_library().

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-11-08 15:08:07 -06:00
Larry Knox
4819f89d3f
Update license url (#332)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
2021-02-17 08:52:04 -06:00
Allen Byrne
6db183590f
develop revert source to clang-format version 11 (#293)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction
2021-01-29 06:55:18 -06:00
Quincey Koziol
a2524671ca
Bring async branch to develop (#166)
* Add H5Fwait, H5Dwait, and other changes for async vol connector

* Revert temporary testing changes

* Add H5Fwait to header file

* Add H5VLreset_lib_state() routine.

* Correct VOL wrap context when retrieving library state for file open & create.

* Manage the API context's VOL connector state as part of the library state.

* Set the 'VOL connector property valid' flag when restoring the library state.

* Don't push new API context on stack when retrieving "current" one.

* Check for NULL VOL wrap context before decrementing refcount on it, when
freeing the API context state.

* Manage recount of underlying connector for VOL wrap context.

* Add H5TSmutex_acquire() and H5TSmutex_release() routines to acquire and
release the global lock on the HDF5 library.

* Update library with new functions related to library global lock

* Add asynchronous token API

* Add new lightweight FUNC_ENTER / LEAVE macros for helping to structure the
threadsafety (H5TS*) routines.

* Sync w/develop

* Initial event set code framework.

* Elaborate on the H5ES routines, starting to add API routines.

Update the "close ID" callbacks to allow asynchronous request tokens to be
passed in from an asynchronous close API call.

Refactor current asynchronous API routines (H5Fopen/H5Fclose and
H5Dread/H5Dread) to use event sets instead of directly working with request
tokens from the application.

Clean up a few other minor warnings & code style issues.

* Implement H5EScreate, H5ESget_count, and H5ESclose.

It should be possible to write a simple application that creates an event
set and uses it with H5Fopen_async, H5Dread_async, H5Dwrite_async, and
H5Fclose_async, then calls H5ESclose (which waits for all async events to
complete).

* Add source file for event set test.

* Refactor sync & async API routines to call common routine.

Move dataset API read / write routines to src/H5D.c, along with all the other
API routines.

Progress on "fake" async VOL connector, for testing.

* Modify async implementation to wrap async requests in a H5VL_object_t
struct so the VOL layer can find the connector when accessing the
request at a later point.

* Free the requests is H5ESclose.  Remove comments implying that request
wait, notify, and cancel callbacks should free the request.

* Fix bug in error handling in H5Fclose.

* Fix bugs in async file routines.  Rename H5VL_create_object_generic to
H5VL_create_object.

* Add explicit async version of H5Fcreate.

* Add more _async routines

* Correct typo for return value from H5Awrite changes

* Add H5EStest and H5ESwait routines

* Updated with API tracing info

* Fix NULL pointer dereference in H5ES__wait

* Add H5is_library_terminating() routine, so that VOL connectors can detect
when the library is shutting down.

* Fix typo

* Remove event from event set's linked list

* Move block of code so that vol_obj is valid

* Avoid setting properties in the DXPL when reseting the library state (and in
the test code).

* Refactor argument tracing to implement new capability for tracing arguments
of non-API routines, with the H5ARG_TRACE macro.   This macro is updated
automatically with the bin/trace script that runs as part of the autogen.sh
process.   Major changes were in src/H5trace.c and bin/trace, with the other
changes being cleanups to the argument lists, to improve their presentation
in the tracing output.

Also - added the "managed string" routines, which can dynamically allocate
strings, appending printf-formatted output to the string efficiently.

* Release memory for managed strings

* Fix printf() formats.

* More printf() format fixes.

* Add H5Eappend_stack routine and regression tests

* Clean up a few missed merge conflicts and update the error stacks.

* Remove unnecessary fork() operations and ten second sleep().

* Restore commented out attribute out, to better enable tracking down the previous failure

* Allow multiple H5ARG_TRACE macros within a routine to be updated

* Switch to using "new" H5ES_insert (which takes the arguments for the caller routine) for all event set operations.  Renames H5ES_insert_new to H5ES_insert and removes the previous H5ES_insert.

* Merge "managed" string routines into "ref-counted" strings, and refactor code to use them.

* Add missing file.

* Add caller's name and arguments to event, for error reporting

* Refactor event set setup for "API common" internal routines

* Checkin async API routines for H5A* and H5G* modules as listed in ID-283.
Fix couple h5dump expected output files due to the changes.

* Add some of the error query routines needed for event sets.

* Refactor to make async setup / teardown and "common" routines cleaner

* (1) Add async APIs to H5L, H5F, and H5D modules
(2) Fix errors in previous checkins of async APIs in H5A and H5G modules
(3) h5dump expected output changes

* Enhance event info, for better error handling

* Change name of temporary vol_obj variable, to help reduce coding errors

* Fix oversight with vol_obj pointer

* Minor code cleanup

* Add missing \'valid\' flag for VOL wrapper context, when restoring the library\'s state

* Run source formatter

* Change H5TSmutex lock and release to include a lock count

* Update error reporting ideas

* Minor updates to improve sanity checking for retrieving / restoring library state

* Updated with feedback from h5py team members

* Refactor internal event set list and event handling, add implementation for H5ESget_err_info

* Change the VOL request subclass callbacks that switch from using "H5ES_status_t" to "H5VL_request_status_t", and also add a H5VL_request_status_t* parameter to the 'cancel' callback in the request subclass.  Also more code quality cleanups to add iterator callbacks to internal event set routines.

* Update API tracing for new H5VL_request_status_t typedef

* Finish converting internal event set operations to use list iterator callbacks, instead of directly accessing the list structure

* Add H5VL_REQUEST_GET_ERR_STACK operation to request subclass, for retrieving a copy of the error stack for a failed asynchronous operation

* Remove 'canceled' event status from Java constants

* Be safer about releasing resources when inserting a newly opened/created object or file into an event set

* Remove H5EStest, add H5ES_WAIT_NONE for 0 timeout, and revise parameters to H5ESwait, to make it more "aggregate".

* Remove H5ES_STATUS_CANCELED from Java wrappers also

* (a) Add async APIs for H5O module as listed in jira issue ID-283.
(b) Remove verification of name parameter in async related routines for H55A and H5L modules
    because it is checked in H5VL_setup* routine.
(c) Modify h5dump expected output due to the async changes.

* Corrections based on PR feedback.

* Further changes to make based on PR feedback.

* Fix missed merge marker, and reformatted line

* Clean up some warnings

* Correct level of indirection

* Relocate prototype (and doxygen info) for H5Aclose

* Change non-static function declarations to be static

* Ensure that H5TSpublic.h header gets installed (#129)

* Add 'wrapper' versions of async calls, to allow language wrappers and layers on top of HDF5 to pass in their application information.

* Switch H5Aexists\*_async and H5Lexists\*_async to use flag to return status, instead of return value.  Make the corresponding changes through most of the v1 and v2 B-tree code.  Clean up warnings in H5public.h and cmpd_dtransform.c.

* Add H5Iregister_future routine and tests.

* Correct return value for H5Lexists_async

* Add H5_DLL macro to public H5ES API routines

* Update supported -> flags parameter for introspect_query callback

* Remove my email address.  Update passthrough VOL connector ID.

* Fix comment for post_open_api_common

* Remove unused non-blocking VOL connector

* Minor cleanup in async branch in preparation for merge to develop

* Update CMake and the Autotools to use the new pass-through VOL ID

* Fix for SWMR daily test failures (#160)

The H5I_register_using_existing_id() call did not initialize the future
ID callbacks, causing the library to segfault when it tried to
resolve those function pointers.

* Added selective async APIs (#150)

* Added selective async APIs

Description:
    Added the following APIs:
        H5Ropen_attr_async
        H5Ropen_object_async
        H5Ropen_region_async

        H5Mcreate_async
        H5Mopen_async
        H5Mput_async
        H5Mget_async
        H5Mclose_async

        H5Tcommit_async
        H5Topen_async
        H5Tcopy_async
        H5Tclose_async
    - Updated an expected output file to include a new internal function
      in the error stack for the failure case.

* Updated async APIs per reviews, including removing async version of
H5Tcopy.

* Removed statements that were added by mistake in the previous commit.

* Fix compile issues in H5M and warnings elsewhere

* Reformat code

* Brings VOL_LIST changes from develop. (#163)

Co-authored-by: Houjun Tang <htang4@lbl.gov>
Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>
Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org>
Co-authored-by: vchoi-hdfgroup <55293060+vchoi-hdfgroup@users.noreply.github.com>
Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
Co-authored-by: Dana Robinson <derobins@hdfgroup.org>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
2020-12-13 18:02:17 -06:00
Quincey Koziol
5ff09ae971
Basic alignment with async branch (#115)
* Basic alignment with async branch - trivial changes to reduce clutter in overall diff.

* Update minor error code to reflect change within library

* Update the error output to match library
2020-11-23 10:18:26 -06:00
Allen Byrne
b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
Quincey Koziol
07e4ef9da4 Clean up private / package / static namespace issues (function naming, which
header file, FUNC_ENTER / LEAVE, etc).  Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
2020-08-06 15:56:04 -05:00
Dana Robinson
6e740457cc Minor normalization with 1.10 branch 2020-07-27 11:09:05 -07:00
Quincey Koziol
9e5dbf6906 Trim trailing whitespace 2020-04-20 18:12:00 -05:00
Dana Robinson
a98747c0f9 Added an H5MM_memcpy call that checks for buffer overlap. 2019-03-16 08:06:52 -07:00
Dana Robinson
b48686febd Normalization with vol_integration (misc internal and datatype) 2018-09-20 13:38:40 -07:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Quincey Koziol
64a339183f Bring SWMR support in to the main development branch. (Finally!) More tests
and the tool and API wrappers will be coming in over the weekend.
2016-12-02 08:07:04 -08:00
Quincey Koziol
b092dbcdfd Bring over another batch (hopefully the last) of non-SWMR "normalization"
changes from the revise_chunks branch.
2016-11-28 16:34:36 -08:00
Quincey Koziol
5d46ad9b39 [svn-r29635] Description:
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-05 02:12:56 -05:00
Dana Robinson
9333a2e39c [svn-r29548] Minor normalization w/ trunk in preparation for big merge.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           autotools parallel (MPICH 3.1.4)
2016-03-23 22:58:43 -05:00
Mohamad Chaarawi
70ad55b105 [svn-r29150] fix for Jira issue 9670 - HDF5 segfaults on corrupted file.
Change compare callback in Btree2 class to correctly account for errors.

tested on bb-8.
2016-02-18 15:50:37 -05:00
Quincey Koziol
48f7ad2df1 [svn-r28811] Description:
Switch v2 B-tree min & max records to be void*'s to be cleaner and generate
less warnings.

Tested on:
    Linux/32 2.6.x (jam) w/serial
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
2016-01-06 10:46:02 -05:00
Quincey Koziol
4b90bb3317 [svn-r28798] Description:
Add missing H5MMprivate.h header file

Tested on:
    Linux/32 2.6.x (jam) w/serial
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
2016-01-04 22:37:06 -05:00
Quincey Koziol
4c5bb2b8db [svn-r28797] Description:
Clean up another round of memory allocation mis-matches.

Tested on:
    Linux/32 2.6.x (jam) w/serial
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
2016-01-04 22:28:43 -05:00
Quincey Koziol
b5504be6cc [svn-r28742] Description:
Add 'update' operation to v2 B-trees, which will insert a new record, or
modify an existing one, depending on if the record exists or not.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-12-29 12:06:36 -05:00
Quincey Koziol
9ceca0f89a [svn-r28710] Description:
Bring r28708 from revise_chunks branch:

    Fix earray, farray and btree2 use of incorrect file pointer when two files
are opened and used to access the data structure.  Misc. minor code cleanups
as well.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    h5committest forthcoming
2015-12-19 09:42:15 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Quincey Koziol
f30ab55f41 [svn-r27237] Description:
Merge v3 metadata cache changes to trunk.  Yay! :-)

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (daily tested on branch)
2015-06-17 19:58:49 -05:00
Quincey Koziol
775a54c19a [svn-r27071] Description:
Clean up H5B2 interface, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux 2.6.* (jam) w/serial & parallel
2015-05-14 20:46:00 -05:00
Quincey Koziol
fd79bc3c1a [svn-r26191] Description:
Track the min & max keys for a v2 B-tree, so it can more efficiently
determine if a key is present in the B-tree.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/parallel & serial
    Linux/32 2.6.x (jam) w/serial
2015-02-17 10:38:54 -05:00
Quincey Koziol
9c9ee2008c [svn-r21919] Description:
Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.

Tested on:
    Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
2012-02-08 22:13:27 -05:00
Quincey Koziol
e5575571d4 [svn-r19396] Description:
Bring back various modifications to the v2 B-trees that were introduced
in the revise_chunks branch but aren't dependent on any file format or API
changes.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, w/threadsafe, in production mode
        Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
        Mac OS X/32 10.6.4 (amazon) in debug mode
        Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
        Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
2010-09-16 06:38:10 -05:00
Quincey Koziol
74c8b68aca [svn-r18702] Description:
Bring r18672 from metadata journaling "merging" branch to trunk:

	Mostly changes to move to only using one 'user data' parameter for
calls to H5AC_protect(), along with some minor reformatting code cleanups.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
        Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-05-05 08:39:56 -05:00
Quincey Koziol
f79ab3b26b [svn-r18634] Description:
Clean up compiler warnings.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
        Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-04-27 13:25:31 -05:00
Quincey Koziol
9eeffcb45e [svn-r18547] Description:
Tweak assert statement to attempt to pacify RSQ compiler.

Tested on:
    None, too minor - just eyeballed.
2010-04-12 08:58:39 -05:00
Quincey Koziol
63611c3aa2 [svn-r18494] Description:
Bring r18491 from metadata journaling "merging" branch to trunk:

	Extract data structure 'destroy' routines from metadata cache client
'destroy' callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
        Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-04-01 20:38:53 -05:00
Quincey Koziol
fd70b2afa8 [svn-r18197] Description:
Trim trailing whitespace from source code files with this command:

find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'

Tested on:
    None - eyeballed only
2010-01-29 23:29:13 -05:00
Quincey Koziol
71a9d50725 [svn-r17943] Description:
Finish refactoring v2 B-trees so that they can have client callback
context provided to the encode/decode callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-01 11:45:27 -05:00
Quincey Koziol
6d5d4ed1d1 [svn-r17893] Descrption:
Remove old shim H5B2 routines from refactoring, rename new routines to
old routine names and switch all users of the H5B2 interface back to the old
routine names now that the switch to using the more current open -> <operation>
-> pattern is used for all the H5B2 code.  This is the final change before 
adding a context to the H5B2 client encode/decode callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-14 22:38:58 -05:00
Quincey Koziol
e8f31a2479 [svn-r17848] Description:
Further refactoring v2 B-trees so that they can get context to the
encode/decode client callbacks:

	- Switch tests to using refactored routines

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-07 08:12:06 -05:00
Quincey Koziol
401f0c995f [svn-r17842] Description:
Further refactor v2 B-tree code toward being able to pass context info
down to encode/decode client callbacks:
	- Separate H5B2_create call to return H5B2_t structure
	- Make loading the v2 B-tree header pick up the client class from the
		ID stored in the file.  Simplify some internal API calls as a
		result.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-05 14:16:15 -05:00
Quincey Koziol
30a52dd1a2 [svn-r17838] Description:
Further refactoring of v2 B-tree code, moving toward being able to pass
a context information to a client's encode/decode callbacks.

	Also, clean up of other minor compiler warnings and code formatting
issues.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-05 08:45:35 -05:00
Quincey Koziol
56276c02cd [svn-r17785] Description:
Further refactor v2 B-tree code to bring it closer to modern data
structure designed in the library, mainly by introducing a H5B2_t type so that
the v2 B-tree could be held open, but not require the B-tree header to be
protected the whole time.  A few other minor tweaks as well.

	Also, remove unused 'dirty' flag from fractal heap header.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.1 (amazon) in debug mode
        Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-10-29 08:58:52 -05:00