Commit Graph

20123 Commits

Author SHA1 Message Date
Jerome Soumagne
0922e60de2 Add H5VL_MAX_TOKEN_SIZE and H5VL_token_t 2019-10-08 14:30:24 -05:00
Quincey Koziol
bf65652e9b Adapt Jerome's "file info" H5VL 'get' query to retrieve container token info.
Remove "by address" location for VOL operations. (Switching to "by token")
2019-10-08 14:30:24 -05:00
Jerome Soumagne
fa6fdde1bf Fix H5VL_blob_get to return size of blob
Fix const in blob API

Add H5HG_HEAP_ID_SIZE macro to return native blob size

Add maximum size for blobs

Fix blob API callbacks to pass VOL file object

Add public wrappers for blob VOL API

Implement passthrough blob callbacks

Update H5Tvlen after callback changes

Update trace information for H5VL blob routines

Fix public header inclusion in native and passthru headers
2019-10-08 14:30:24 -05:00
Quincey Koziol
eaa65c862b Add 'blob' callbacks to VOL, along with a native implementation to store them
in the global heap, and changed the VL datatype conversion code to use blobs.

Move encode/decode of sequence lengths into VL datatype callbacks, from native
VOL blob routines.
2019-10-08 14:30:23 -05:00
Dana Robinson
f32e70895e Merge pull request #1985 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:H5Gget_object_behavior_change to develop
* commit 'ff3278f1a0d57663d73caa6aaa7f209864e9a9bd':
  Fixed a bug (HDFFV-10899) where the behavior of the deprecated H5Gget_objinfo() call had changed and passing in a non-existing soft link with a statbuf of NULL passed instead of failed (as it should as per the RM). The HDF5 1.8 and 1.10 behavior was restored and H5Gget_objinfo() will now fail and return -1 as before.
2019-10-04 13:28:12 -05:00
Dana Robinson
ff3278f1a0 Fixed a bug (HDFFV-10899) where the behavior of the deprecated
H5Gget_objinfo() call had changed and passing in a non-existing
soft link with a statbuf of NULL passed instead of failed (as
it should as per the RM). The HDF5 1.8 and 1.10 behavior was
restored and H5Gget_objinfo() will now fail and return -1 as
before.
2019-10-04 02:03:11 -07:00
Dana Robinson
f2be6da714 Merge pull request #1983 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:small_develop_tweaks to develop
* commit '638d31a78a9ea5db438d30e78f8cbaa1146b7f87':
  Fixed the java assert issue with H5O cache corking calls.
2019-10-03 15:34:15 -05:00
Dana Robinson
638d31a78a Fixed the java assert issue with H5O cache corking calls. 2019-10-03 12:12:23 -07:00
Allen Byrne
35bc2d4592 Merge pull request #1980 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '4394f0776b3e695b9ab383421824e4533da821a8':
  More whitespace changes
  Whitespace cleanup
2019-10-03 12:54:48 -05:00
Allen Byrne
4394f0776b More whitespace changes 2019-10-03 12:10:24 -05:00
Allen Byrne
8e24fe2bc1 Whitespace cleanup 2019-10-03 11:41:25 -05:00
Allen Byrne
574cc772d5 Merge pull request #1973 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'bc6115931877c6f6d63977f2c03c5e2dbffe3e56':
  HDFFV-10919 merge synching
  HDFFV-10408,10918 Add note
2019-10-02 15:38:39 -05:00
Allen Byrne
bc61159318 HDFFV-10919 merge synching 2019-10-02 15:13:37 -05:00
Allen Byrne
98720d6511 HDFFV-10408,10918 Add note 2019-10-02 13:08:35 -05:00
Allen Byrne
db86b6d397 Merge pull request #1968 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '643d298823255a684862f4c6eb85ac5afde4b796':
  HDFFV-10918 add tests for h5repack ext storage
2019-10-02 12:45:29 -05:00
Allen Byrne
643d298823 HDFFV-10918 add tests for h5repack ext storage 2019-10-01 16:38:48 -05:00
Allen Byrne
f4a8792292 Merge pull request #1966 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '09e6dcbfbb50d359177c9ee72e662287eb04d9c7':
  Add new toolchain file
2019-10-01 11:48:51 -05:00
Vailin Choi
5c9c07b149 Merge pull request #1959 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/iteration_error_in_test_versionbounds to develop
* commit '9ea386b6a660bd29225e96a246439db0c7f73da2':
  Fixed the iteration error in test_versionbounds() in test/dtypes.c.
2019-10-01 10:33:35 -05:00
Allen Byrne
09e6dcbfbb Add new toolchain file 2019-10-01 10:09:16 -05:00
Allen Byrne
69e31596ff Merge pull request #1963 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'bbe81a2155bfa42545579761c4f064353d6f68de':
  fix for statement declare of type
2019-09-30 15:14:02 -05:00
Allen Byrne
bbe81a2155 fix for statement declare of type 2019-09-30 14:50:18 -05:00
Jake Smith
35dc4b56d0 Merge pull request #1958 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:develop to develop
* commit 'cab37f63144fd24d1ff39359e3d47a2c16198633':
  Move function-scope macro definition to file-scope.
  Refactor external file addition loop to static function.
  fix declaring variable in for statement
2019-09-30 14:00:05 -05:00
Jacob Smith
cab37f6314 Move function-scope macro definition to file-scope. 2019-09-30 13:57:09 -05:00
Allen Byrne
d23453e329 Merge pull request #1960 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'f6d4ce609b16601f3f4733266bb413a2bd765bc1':
  Add clang toolchain
2019-09-30 13:35:29 -05:00
Vailin Choi
9ea386b6a6 Fixed the iteration error in test_versionbounds() in test/dtypes.c. 2019-09-30 12:56:49 -05:00
Allen Byrne
f6d4ce609b Add clang toolchain 2019-09-30 12:47:00 -05:00
Jacob Smith
541f50616f Refactor external file addition loop to static function. 2019-09-29 18:52:55 -05:00
Jacob Smith
59aa3afade fix declaring variable in for statement 2019-09-28 16:05:51 -05:00
Larry Knox
4de1fa88c2 Merge pull request #1957 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '3fb711e0ff2516cba7a0cb34f2d8ca38241b06a7':
  Number of arguments requires H5Dopen2.
2019-09-28 14:33:37 -05:00
Larry Knox
3fb711e0ff Number of arguments requires H5Dopen2. 2019-09-28 13:01:30 -05:00
Dana Robinson
279a3f915b Merge pull request #1956 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit 'a8a55f3c4863b500c4d0e5a2982d3e2b5a05b3cc':
  Corrected missing parallel #ifdefs.
2019-09-27 16:50:00 -05:00
Dana Robinson
a8a55f3c48 Corrected missing parallel #ifdefs. 2019-09-27 14:25:04 -07:00
Vailin Choi
a19de0ec83 Merge pull request #1934 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10585-investigate-slowness-of-regular to develop
* commit '7924eee0e5ee0745b784c635042b8633886fb799':
  (1) Address the feedback from the PR review (2) Add release notes
  Fix for HDFFV-10585 investigate hyperslab slowness: 1) Improve hyperslab performance when doing I/O from 1-d disjoint file dataspace to 1-d contiguous memory dataspace. 2) Move coding in H5D__chunk_io_init() that is constructing the chunk mappings to a separate routine.
2019-09-27 12:39:31 -05:00
Dana Robinson
270a363cdc Merge pull request #1955 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:missing_vol_markup to develop
* commit '4fb64c89fe52a309150ca2d5bb97eb4763e598e9':
  Converted H5O MD cache cork calls to use the VOL.
  Marked up H5Fget/set_mpi_atomicity() to use the VOL.
2019-09-27 12:34:29 -05:00
Dana Robinson
4fb64c89fe Converted H5O MD cache cork calls to use the VOL. 2019-09-26 19:13:35 -07:00
Dana Robinson
fbb0728f54 Marked up H5Fget/set_mpi_atomicity() to use the VOL. 2019-09-26 19:13:13 -07:00
Vailin Choi
7924eee0e5 (1) Address the feedback from the PR review
(2) Add release notes
2019-09-26 14:10:56 -05:00
Vailin Choi
52fef3c6d2 Merge pull request #21 in ~VCHOI/my_third_fork from develop to bugfix/HDFFV-10585-investigate-slowness-of-regular
* commit '0ea77179d507bd2c29f3b9b357a0c35d4077b29c': (39 commits)
  Fix the errors when updating the versions in the new 1.13 develop branch.
  add missing version to list
  Add new versioned filename to list
  Update N_FSINFO_VERSION_BOUNDS to H5F_LIBVER_NBOUND.
  Remove file script
  Update versioning to next major version
  Update develop branch version to 1.13.0 after creation of hdf5_1_12 branch.
  Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942) to develop branch.
  Update to current external file population.
  Revert else-if to single line.
  Fix missing option and incorrect close
  Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package."
  Revert "Fix for H5EA debug package when built in release mode."
  Change print calls to HD-wrapped. Minor formatting tweaks (inc. regressions and in-file style-matching).
  Refactor h5repackgentest to have more modular internals, for easier addition of new tests. Update manifest and test script for new hdf5 external-storage .h5 files.
  Remove obsolete symbol
  small syntax changes
  Renamed get/set_time() calls in the tools library to avoid name clash when building static parallel HDF5 w/ static linking to OpenMPI.
  Change unused variable to generic form
  Whitespace cleanup
  ...
2019-09-26 13:41:56 -05:00
Vailin Choi
0ea77179d5 Merge pull request #1954 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/ver_bounds_114 to develop
* commit '50ba969a61f8f90212c97aa6e11674fe19fb89f4':
  Fix the errors when updating the versions in the new 1.13 develop branch.
2019-09-26 13:32:42 -05:00
Vailin Choi
50ba969a61 Fix the errors when updating the versions in the new 1.13 develop branch. 2019-09-26 12:35:11 -05:00
Allen Byrne
a38bfab696 Merge pull request #1953 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'e6b029e77e799292eb1ee074b24a224f4613a3b2':
  add missing version to list
2019-09-26 11:52:04 -05:00
Allen Byrne
e6b029e77e add missing version to list 2019-09-26 10:48:37 -05:00
Allen Byrne
7b09c325cb Merge pull request #1951 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'a08b3adecea1034cf0a20a6ff35b9980fb3d8cb8':
  Add new versioned filename to list
2019-09-26 08:59:51 -05:00
Allen Byrne
a08b3adece Add new versioned filename to list 2019-09-26 08:43:41 -05:00
Larry Knox
9c88755922 Merge pull request #1948 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'd931415bb96aae645832898c2f9eee0d02fe69b4':
  Update N_FSINFO_VERSION_BOUNDS to H5F_LIBVER_NBOUND.
2019-09-25 18:07:40 -05:00
Larry Knox
d931415bb9 Update N_FSINFO_VERSION_BOUNDS to H5F_LIBVER_NBOUND. 2019-09-25 17:56:39 -05:00
Larry Knox
a563949da4 Merge pull request #1947 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop
* commit 'd08db4f8550ee023f2303f3064308c1fa9854552':
  Remove file script
  Update versioning to next major version
2019-09-25 17:36:24 -05:00
Allen Byrne
d08db4f855 Remove file script 2019-09-25 17:35:52 -05:00
Allen Byrne
b2f52d0b07 Update versioning to next major version 2019-09-25 17:28:17 -05:00
Allen Byrne
46f81a33dd Merge pull request #1944 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'b04e1ad058fd98fc0b303586dd5f6f19aa645ed0':
  Update develop branch version to 1.13.0 after creation of hdf5_1_12 branch.
2019-09-25 16:23:52 -05:00