Commit Graph

13890 Commits

Author SHA1 Message Date
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
2014-07-07 13:22:48 -05:00
HDF Tester
5ad9bfb322 [svn-r25395] Snapshot version 1.9 release 187 2014-07-06 07:31:55 -05:00
Mohamad Chaarawi
ee9d595a8c [svn-r25392] fix HDFFV-8761:
allocating space for zero-length chunked dataset and asserting.
2014-07-03 10:43:48 -05:00
Mohamad Chaarawi
43b3c20c93 [svn-r25386] remove double declaration of off and len. 2014-07-01 15:06:22 -05:00
HDF Tester
8925b39181 [svn-r25378] Snapshot version 1.9 release 186 2014-06-29 05:24:43 -05:00
Allen Byrne
28ec2d2693 [svn-r25357] Change default timeout to 1200 seconds or 20 mins
adjust up for certain tests.
2014-06-25 09:15:13 -05:00
Allen Byrne
d9c1c23c38 [svn-r25350] Add more vfd tests to smaller timeout limits 2014-06-24 10:14:32 -05:00
Allen Byrne
e90941e86a [svn-r25343] Add more vfd tests to smaller timeout limits 2014-06-23 16:57:13 -05:00
Allen Byrne
5849a90e16 [svn-r25341] HDFFV-8845: Propagated changes made to configure.ac to cmake. Enabled MSVC for two tests as suggested in the issue. 2014-06-23 13:26:41 -05:00
HDF Tester
fbaf82bc3c [svn-r25339] Snapshot version 1.9 release 185 2014-06-22 05:26:37 -05:00
John Mainzer
12ee3deb82 [svn-r25321] Reworked and enhanced extreme sanity check in H5C.c, fixing an
uninitialized variable bug in passing.

Added the H5C_get_entry_ptr_from_addr() and H5C_verify_entry_type()
in H5C.c, along with their pass through functions in H5AC.c.  Note
that H5C_get_entry_ptr_from_addr() is quite slimey, and should be
avoided if possible.

Updated fractal heap to use flush ordering to force children
in the hdr / iblock / dblock tree to be flushed prior to parents.
This is part of a port of the fractal heap to the V3 cache, although
I gather that it will also be useful for SWMR.

Added sanity checking code to the fractal heap to verify that direct 
blocks are flushed before their parent indirect blocks, child indirect
block are flushed prior to their parent indirect blocks, and that the
root iblock or dblock is flushed prior to the header

Tested on:

        Jam: Serial and parallel
        Phoenix (Debian): serial, debug and production
        amazon (MacOS): serial
2014-06-18 13:18:36 -05:00
Mark Evans
471aedb1e8 [svn-r25317] Edited the Introduction section.
Tested: Doxygen and Firefox
2014-06-18 11:10:27 -05:00
Allen Byrne
c194e9c9a7 [svn-r25313] Use cmake var to store name of created h5_test_kind_xxxx mod file.
Tested: local linux
2014-06-18 09:28:09 -05:00
Allen Byrne
9c4e646c1a [svn-r25310] Add max time for VFD objcopy test 2014-06-18 08:39:37 -05:00
Scot Breitenfeld
bfb60a0cc1 [svn-r25304] Fixes latest check-in errors for:
HDFFV-8653
replace non-standard sizeof in the fortran tests with c_sizeof

(1) Removed the overloaded h5_sizeof functions for characters and integer arrays since Sun compilers don't allow them to be passed into a function that uses sizeof.

(2) Requested min. precision for reals to avoid duplicate interfaces when the flag -r8 (or equiv.) is set.

tested:
*jam: intel, -i8 -r8 --enable-fortran2003
*jam: pgi, --enable-fortran2003
*emu: sun, --enable-fortran2003
2014-06-17 13:09:39 -05:00
Allen Byrne
0b75068901 [svn-r25302] Add nounistd option to flex command for windows caompatibility 2014-06-17 09:50:49 -05:00
Allen Byrne
890a76ea64 [svn-r25300] Add flex / bison commands to bin script and regenerate hl files using latest versions.
No other files touched.
Tested: h5committest
2014-06-16 15:12:42 -05:00
Allen Byrne
8c56c5096e [svn-r25299] correct case of CMake commands 2014-06-16 14:26:18 -05:00
Scot Breitenfeld
90757478c2 [svn-r25294] added implicit none 2014-06-16 12:06:46 -05:00
Scot Breitenfeld
7d3ff84d59 [svn-r25291] Fix for:
HDFFV-8653
replace non-standard sizeof in the fortran tests with c_sizeof
2014-06-16 11:56:01 -05:00
Scot Breitenfeld
9cf0844928 [svn-r25290] Fix for:
HDFFV-8653
replace non-standard sizeof in the fortran tests with c_sizeof
2014-06-16 11:38:07 -05:00
Scot Breitenfeld
59517a164b [svn-r25287] Fix for:
HDFFV-8653
replace non-standard sizeof in the fortran tests with c_sizeof
2014-06-16 10:33:06 -05:00
Scot Breitenfeld
744bc7d236 [svn-r25286] Fix for:
HDFFV-8653
replace non-standard sizeof in the fortran tests with c_sizeof 

Tested: jam (gnu, intel) with make and cmake.
2014-06-16 10:15:25 -05:00
HDF Tester
588a733b18 [svn-r25285] Snapshot version 1.9 release 184 2014-06-15 04:58:19 -05:00
Quincey Koziol
ec408ef083 [svn-r25283] Description:
Correct error in new hyperslab selection test to use the right # of
dimensions for start/stride/count/block arrays.  Also, switch H5Sselect_select
to H5Smodify_select.

Tested on:
    MacOSX/64 10.9.3 (amazon) w/gcc 4.9.1, OpenMPI, C++, FORTRAN & threadsafe
    (Too minor to require h5committest)
2014-06-13 22:23:54 -05:00
Allen Byrne
e23830d29f [svn-r25282] remove obsolete file 2014-06-13 16:16:34 -05:00
Dana Robinson
25ba47bc97 [svn-r25274] Adds #defines that ensures that DllMain is only compiled in when the thread-safe shared library is built on Windows.
Fixes HDFFV-8837.

Tested on 64-bit Windows 7 with VS2012.
2014-06-13 03:44:34 -05:00
Quincey Koziol
4ccb865c70 [svn-r25273] Description:
Bring in Chao/Neil/my changes to optimize hyperslab selection operations
further, along with 3 new public API routines: H5Scombine_hyperslab(),
H5Sselect_select() and H5Scombine_select(), along with many minor cleanups to
the code and fixing a few compiler warnings.

Tested on:
    Mac OSX/64 10.9.3 w/gcc 4.9.x and parallel w/OpenMPI
    (h5commttest forthcoming)
2014-06-13 01:23:57 -05:00
Allen Byrne
c2bc22d51c [svn-r25266] update to m4 1.4.17 in reconfigure did not change any other files 2014-06-12 14:54:44 -05:00
Allen Byrne
d74b7fb7b8 [svn-r25261] limit vfd flush1 test time 2014-06-11 14:23:00 -05:00
Allen Byrne
0c07b68c92 [svn-r25260] Update versions 2014-06-11 13:51:18 -05:00
Allen Byrne
d867178192 [svn-r25249] change test to ignore h5diff warnings (endianess issue) 2014-06-10 11:21:30 -05:00
HDF Tester
99800edafb [svn-r25241] Snapshot version 1.9 release 183 2014-06-08 06:30:43 -05:00
Allen Byrne
80a2084bf7 [svn-r25239] Add set_property command for list option.
Minor doc edits
2014-06-04 16:22:31 -05:00
Scot Breitenfeld
cf71b7db57 [svn-r25238] Removed warning about the data type of the actual argument does not match the definition to verify function. Trivial fix.
tested: jam (gnu)
2014-06-04 09:08:17 -05:00
HDF Tester
4a8b02f838 [svn-r25216] Snapshot version 1.9 release 182 2014-05-25 06:51:16 -05:00
Quincey Koziol
60f8a4100e [svn-r25215] Description:
Bring changes from Coverity branch back to trunk:

r20914:
    Use HDstrncpy and HDstrncat! --gh

20915:
    Use HDstrncpy and HDstrncat! --gh

Tested on:
    Mac OSX/64 10.9.3 (amazon) w/gcc 4.9.0, C++, FORTRAN & parallel
    (too minor to require h5committest)
2014-05-25 00:55:39 -05:00
Allen Byrne
a8b48bc7f5 [svn-r25208] Make the header generation optional and depend on finding perl executable. Needed because window does not have perl. 2014-05-21 09:29:41 -05:00
Quincey Koziol
b6733f1109 [svn-r25207] Description:
Merge changes from Coverity branch to trunk:

r20907:
    Original issue was #338.

    Refactored code to clean up allocations consistantly, completely, check all returns, assign initialization values and handle errors.

Tested on:
    MacOSX/64 10.9.3 (amazon) w/gcc 4.9, FORTRAN, C++, parallel & multi-threaded
    (too minor to require h5committest)
2014-05-20 13:26:38 -05:00
Quincey Koziol
04c24b4624 [svn-r25206] Description:
Add new warning flags for gcc 4.9.x

Tested on:
    MacOSX/64 10.9.3 (amazon) w/gcc 4.9.0
2014-05-20 13:25:12 -05:00
Allen Byrne
e6a3a3cfad [svn-r25205] Fix CMP0040 Policy cmake usage 2014-05-20 10:41:01 -05:00
Binh-Minh Ribler
5444efe2b1 [svn-r25202] Description:
Set OUTPUT_DIRECTORY to cpplus_RM and HTML_OUTPUT to '.' because
    they were reset by accident causing "bin/release doc" to fail.

    Ran bin/release to verify the failure was gone.
2014-05-19 12:48:55 -05:00
HDF Tester
2c12b5d42d [svn-r25199] Snapshot version 1.9 release 181 2014-05-18 04:53:32 -05:00
Quincey Koziol
a613b70f93 [svn-r25197] Description:
Bring changes from hdf5_1_8_coverity branch back to trunk:

r20878:
    Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check.

r20880:
    Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom.

r20882:
    Fixes for coverity:
    1) bug #1679: remove dead code in test/mf.c
    2) bug #1680: remove dead code in tools/lib/h5diff_dset.c

r20883:
    Fix coverity issue 585

    Description:
    Changed variable "c" in processStrData in h5import.c to an int, to match fgetc
    return value, and removed call to feof, instead checking if c == EOF.

Tested on:
    MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel
    (too minor to require h5committest)
2014-05-16 22:22:51 -05:00
Allen Byrne
896a5e7992 [svn-r25191] Moved file back to cmake folder 2014-05-14 15:10:42 -05:00
Allen Byrne
ef494f08a2 [svn-r25189] Fix CMP0053 cmake usage 2014-05-14 14:51:54 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder
Tested: local linux
2014-05-14 14:50:28 -05:00
Allen Byrne
8f57e86ab9 [svn-r25185] update cmake command name case 2014-05-12 13:14:46 -05:00
Allen Byrne
22f9644670 [svn-r25183] correct path statement 2014-05-12 12:10:51 -05:00
HDF Tester
0774c92383 [svn-r25181] Snapshot version 1.9 release 180 2014-05-11 07:01:22 -05:00