Commit Graph

22234 Commits

Author SHA1 Message Date
Allen Byrne
05a0411140
Remove bitbucket.hdfgroup.org dependency. #2082 (#2086)
*
2022-09-07 17:12:55 -05:00
H. Joe Lee
2d4a96b32c
Change test to example. (#2087)
* Remove the commented line.
2022-09-07 17:12:19 -05:00
H. Joe Lee
ecc687c4ff
Fix grammar and spelling in comment block. (#2089) 2022-09-07 17:11:40 -05:00
Scot Breitenfeld
99f17c7271
Doxygen Fortran (#2062) 2022-09-07 17:11:20 -05:00
Dana Robinson
1804e0e0c4
Updates release schedule for 2023 (#2085)
* Updates release schedule for 2023

* Updates figure to put 1.13 and 1.14 on the same line
2022-09-04 04:42:25 -07:00
Allen Byrne
c8fdd92cd4
Update CMake code to 3.18 minimum version (#2080)
* Update CMake code to 3.18 minimum version

* Updated release note
2022-09-02 17:31:29 -07:00
Dana Robinson
6e8aaab1b4
Minor changes to CMake comments, etc. (#2078) 2022-08-31 11:03:37 -05:00
Dana Robinson
ccdcec273a
Updates onion VFD major error codes (#2076) 2022-08-31 11:01:52 -05:00
Neil Fortner
5de9d63ff4
Address review comments from downstream merge of #2016 (#2073) 2022-08-31 11:01:05 -05:00
jhendersonHDF
5719187a34
Fix Java tests for Developer build modes (#2079) 2022-08-29 09:00:42 -07:00
Dana Robinson
5097ff016f
Tidying of configure check C code (#2077)
* Tidying of configure check C code

* Fixed missing endif removal
2022-08-29 08:59:15 -07:00
Dana Robinson
08aebb6d1a
Adds documentation for config directory (#2065)
* Adds documentation for config directory

* Fix spelling error
2022-08-24 23:05:28 -07:00
Gerd Heber
e1d6157c5d
Added VOL connector feature flag RFC. (#2064) 2022-08-24 10:30:15 -05:00
Dana Robinson
ee55dd777b
Fortran module directory improvements (#2060)
* Removes the module directory from the Automake flags as this
  generated a large number of "missing include directory" warnings
  and is unecessary
* Adds the module path to libhdf5.settings
2022-08-23 12:25:07 -07:00
Scot Breitenfeld
88ed5b69d4
removed h5rget_object_type_f module interface (#2057) 2022-08-23 09:09:08 -07:00
Dana Robinson
f020d129b2
Corrects more Fortran warnings (#2059)
* Moves -Wunused-dummy-arguments to the developer warnings since this
  generates a lot of spurious, unfixable noise due to things like
  callback wrappers
* Changes the return cast in h5fget_fileno_c, fixes a comment, and comment
  on potential badness
* Initializes a variable in tH5L_F03.F90 to quiet a 'maybe
  uninitialized' warning
2022-08-23 08:48:14 -07:00
Neil Fortner
21ec337855
Fix inappropriate use of HGOTO_ERROR (#2055) 2022-08-22 11:39:49 -05:00
Dana Robinson
801edb4f52
Quiets Fortran warnings about large arrays (#2053) 2022-08-22 08:28:48 -07:00
Dana Robinson
ec3737ab69
GitHub workflow cleanup (#2047)
* Cleans up main GitHub workflow(s)

* Combines main.yml and pr-check.yml, which differed trivially
* Reduces config redundancy via proper use of the matrix scheme
* Adds build-only configs for:
    - Version 1.6 default API
    - No deprecated symbols
    - Parallel HDF5
* The -Werror config was converted to build-only
* Makes the naming scheme more uniform
* Spaces out the code and adds comments

* Typo fix

* Fix mirror VFD CMake configure typo

* Debugging hack

* Undo debug hack and fix CMake build mode

* Set CC=mpicc for parallel builds

* Another attempt to fix parallel builds

* Updates comments in main.yml

* Fixes a v16 API bug in the mirror VFD test code

* Committing clang-format changes

* Added checks for v1.8 - 1.12 APIs

* Manually specify Windows configs

Java debug builds time out when running tests on Windows. We'll disable
them in debub mode while we investigate.

* Revert "Manually specify Windows configs"

This reverts commit d710d8d219.

* Skip Debug Windows configs while we investigate Java H5L timeouts

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-22 08:21:27 -07:00
Dana Robinson
f24dff5157
Quiets Fortran Autotools builds (#2052) 2022-08-22 08:21:06 -07:00
Dana Robinson
3015e3d7ab
Quiets Automake rules in src directory (#2051)
* Quiets Automake rules in src directory

* Fix whitespace
2022-08-22 06:25:17 -07:00
Dana Robinson
10eb43d0c2
Removes ST from the list of debug packages (Autotools only) (#2045)
* Removes ST from the list of debug packages

The ST package (ternary search trees) was removed from the library a while ago

* Replaced B2 package

I did some crude timing with and without the B2 debug code enabled
and it doesn't seem to make much of a difference.
2022-08-22 04:12:12 -07:00
Dana Robinson
3e38a001a1
Simplify the CODEOWNERS file (#2049)
Simplify the CODEOWNERS file
2022-08-22 03:01:00 -07:00
jhendersonHDF
2b786ffe5a
[WIP] Add Developer build mode to CMake (#1659)
* Add Developer build mode to CMake

* Set a few CMake variables for Developer build modes

* Refactor enabling of debug and developer-level compile definitions

* Convert cache debugging macros to normal ifdef style

Normal ifdef-style instead of if-style allows build system to define macros
without warning about redefining macros with different values (0 vs. 1)

* Add HDF5 Developer compile definitions to testing files

* Temporarily disable -fanalyzer flag for GCC 12+ Developer builds
2022-08-19 17:18:30 -07:00
jhendersonHDF
281db5876e
Cleanup some warnings in Java JNI code (#2034) 2022-08-19 09:05:43 -07:00
Dana Robinson
7f6261a677
Removes cmake_ext_mod (files moved to cmake) (#2041)
At one time this content was a git submodule shared between several
projects but that time has long passed.
2022-08-19 07:54:42 -07:00
Dana Robinson
de46019a86
Removes bin/deploy, which just calls h5redeploy under the hood (#2027) 2022-08-19 09:11:22 -05:00
Dana Robinson
8cd97c4793
Updates the warnist script to report gfortran generic warnings (#2040)
These are not associated with a file and line number, like specifying
a non-existant include directory on the compile line.
2022-08-19 09:09:59 -05:00
Larry Knox
9dfcca0bbb
Release updates (#2033)
* Update HISTORy-1_13.txt and clean RELEASE.txt entries after 1.13.2 release.
2022-08-18 08:35:21 -05:00
Neil Fortner
a3fd350483
Add note to RELEASE.txt for GitHub #2016 (#2030)
* Fix bug in attribute type conversion where the background buffer would
not be initialized with the destination contents when necessary.  Other
minor simplification.

* Committing clang-format changes

* Fix warnings.

* Address review comments.

* Add RELEASE.txt note for PR #2016

* Add GitHub number to release note

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-17 22:08:43 -05:00
Dana Robinson
e6f16c0ec2
Fixes codespell issues (#2032)
* Fixes codespell issues

* Fixed another typo
2022-08-17 16:31:54 -07:00
Neil Fortner
9304f277e8
Add note to RELEASE.txt for HDFFV-11308 (#2029)
* Add note to RELEASE.txt for HDFFV-11308

* Fix formatting error in RELEASE.txt
2022-08-17 13:35:48 -07:00
Dana Robinson
cf482563cc
Remove unused dependency files (#2025) 2022-08-17 11:21:03 -07:00
Dana Robinson
d201907a4b
Update bin/README.md
Correct missing space after # and ##
2022-08-17 10:46:21 -07:00
Dana Robinson
e4de06057a
Adds a TODO section to bin/README.md (#2028)
Mainly to address the semi-broken state of chkcopyright
2022-08-17 10:45:05 -07:00
jhendersonHDF
07efecd9f4
Adjustments to t_bigio.c for >2GiB I/O test (#1992) 2022-08-17 10:44:00 -07:00
Dana Robinson
ecc9bbe4b6
Adds a README.md file to bin that indicates script usage (#2024)
* Adds a README.md file to bin that indicates script usage

* Forgot header row
2022-08-17 09:34:45 -07:00
Dana Robinson
b54d01fcb5
Removes bin/chkconfigure (#2023)
We check autoconf in configure.ac and can check for anything else in
autogen.sh
2022-08-17 09:22:39 -07:00
Dana Robinson
1483eeef34
Removes bin/format_source_patch (#2022)
This differs only trivially from bin/format_source
2022-08-17 09:22:13 -07:00
Dana Robinson
dc9562ee77
Removes the bin/gcov_script file (#2021)
We don't need fragile scripts to run basic profiling programs
2022-08-17 09:21:38 -07:00
Dana Robinson
afc54d75a1
Replaces bin/newer with -nt comparison in Makefiles (#2020) 2022-08-17 09:21:24 -07:00
Dana Robinson
2bba853375
Removes the bin/yodconfigure script which appears unused (#2019) 2022-08-17 08:03:14 -07:00
Dana Robinson
d6927e49c0
Replaced bin/mkdirs w/ mkdir -p -m 755, which is POSIX (#2018) 2022-08-17 08:02:39 -07:00
Dana Robinson
191c27c0a9
Removes the broken bin/errors script (#2017) 2022-08-16 15:42:55 -07:00
bmribler
951566a4ad
Fix cpp comment (#2011)
* Fix test failure

Description:
    - Added two H5File constructors to open file with non-default fapl
    - Added non-default fapl to test functions
    - Commented certain renaming attribute tests because of the unexpected
      behavior in renaming an attribute (HDFFV-11327)

Platform tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Update H5File.cpp

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-16 14:06:55 -07:00
Neil Fortner
75f4d9b042
Fix bug in attribute type conversion wiith compound types (#2016)
* Fix bug in attribute type conversion where the background buffer would
not be initialized with the destination contents when necessary.  Other
minor simplification.

* Committing clang-format changes

* Fix warnings.

* Address review comments.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-16 14:04:48 -07:00
bmribler
10e4dd4ef1
Fix c++ test failure (#2005)
* Fix test failure

Description:
    - Added two H5File constructors to open file with non-default fapl
    - Added non-default fapl to test functions
    - Commented certain renaming attribute tests because of the unexpected
      behavior in renaming an attribute (HDFFV-11327)

Platform tested:
    Linux/64 (jelly)

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-12 13:33:30 -05:00
Larry Knox
25ef534039
Update version to 1.13.3-1 after creating hdf5_1_13_2 branch for 1.13.2 (#2004)
release.
Added new version to exceptions in line 75 of src/H5.c.
2022-08-12 08:17:25 -05:00
Larry Knox
029cde6111 Revert "Increment version to 1.13.3-1 after creating hdf5_1_13_2 branch for release"
This reverts commit c58558e872.

H5TEST-tcheck_version-release failed.
2022-08-11 22:45:43 -05:00
Larry Knox
c58558e872 Increment version to 1.13.3-1 after creating hdf5_1_13_2 branch for release
of HDF5 1.13.2.
2022-08-11 22:15:46 -05:00