Commit Graph

96 Commits

Author SHA1 Message Date
Quincey Koziol
6b45f5172c [svn-r11245] Purpose:
Code cleanup

Description:
    Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.

Solution:
    Ran this script in each directory:

foreach f (*.[ch] *.cpp)
    sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end


Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-08-13 15:53:35 -05:00
Quincey Koziol
34bd25f361 [svn-r11144] Purpose:
New port

Description:
    Elena asked me to check in her NEC SX-6 work, so here it is! :-)

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    NEC SX-6 (by Elena)
2005-07-22 20:55:12 -05:00
James Laird
985af5617f [svn-r10785] Purpose:
Feature

Description:
Added "support" for UTF-8 character encoding.

Solution:
Wrote tests to check that UTF-8 can be used in a number of places in
HDF5 (object names, data, etc.).  These tests live in test/tunicode.c.
Added a new UTF-8 character encoding for datatypes.

Platforms tested:
mir, modi4, heping

Misc. update:
2005-05-23 13:20:07 -05:00
Quincey Koziol
eec925dc3f [svn-r10648] Purpose:
Bug fix

Description:
    Remove declaration of 'prefix' variable that was moved into the h5tools
library.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/CC=g++
    Too minor to require h5committest
2005-04-22 12:47:45 -05:00
Raymond Lu
055c563da4 [svn-r10035] Purpose: Bug fix
Description: On SGI Altix(cobalt) Linux, wrong values were printed out for enum data type
members.  No apparent reason was discovered.

Solution:  use another pointer to the buffer containing the member value.  It seems fix the
problem.

Platforms tested:  cobalt - simple change, where the bug was discovered.
2005-02-17 15:49:08 -05:00
Quincey Koziol
5695ffc13d [svn-r9869] Purpose:
Bug fix

Description:
    In an earlier bug-fix, I inadvertently inverted the meaning of the
"% utilization" in h5ls.

Solution:
    De-invert it. :-)

Platforms tested:
    FreeBSD 4.10 (sleipnir)
    Too minor to require h5committest
2005-01-25 08:18:37 -05:00
Quincey Koziol
427ff7da28 [svn-r9727] Purpose:
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)

Description:
    Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation.  So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.

    I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
    FreeBSD 4.10 (sleipnir) w/threadsafe
    FreeBSD 4.10 (sleipnir) w/backward compatibility
    Solaris 2.7 (arabica) w/"purify options"
    Solaris 2.8 (sol) w/FORTRAN & C++
    AIX 5.x (copper) w/parallel & FORTRAN
    IRIX64 6.5 (modi4) w/FORTRAN
    Linux 2.4 (heping) w/FORTRAN & C++


Misc. update:
2004-12-29 09:26:20 -05:00
Quincey Koziol
b4d39e7adb [svn-r9447] Purpose:
Bug fix

Description:
    Correct values used in "space utilization" equation: the 'used' and
'total' values were backwards.

Platforms tested:
    FreeBSD 4.10 (sleipnir)
    Too minor to require h5committest
2004-10-22 16:03:50 -05:00
Quincey Koziol
defe612ab2 [svn-r9370] Purpose:
Refactor code

Description:
    Refactor common code for determining the native type for using in the
tools into separate routine.

    Also, reduce diffs between the two branches and bring back some fixes from
the development branch to the release branch.

Platforms tested:
    FreeBSD 4.10 (sleipnir)
    too minor to require h5committest
2004-10-06 11:11:18 -05:00
Raymond Lu
7ba45c05b3 [svn-r9364]
Purpose:  change feature

Description:  Back up support bitfield and time datatypes in H5Tget_native_type.Leave it to future support.  Let it return "not supported" error message for
now.


Platforms tested:  h5committest and fuss.

Misc. update:  RELEASE.txt
2004-10-05 09:31:14 -05:00
Raymond Lu
cb7f03a26f [svn-r9183] Purpose: New feature
Description:  Restore 6 old error API functions back to the library to be backward
compatible with v1.6.  They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto,
H5Eget_auto.  These functions do not have error stack  as parameter.

Solution:  Internally, these functions use default error stack.

Platforms tested:  h5committest and fuss.

Misc. update: RELEASE.txt
2004-09-01 12:43:30 -05:00
Quincey Koziol
e5e786f589 [svn-r8782] Purpose:
Code cleanup

Description:
    Clean up almost all warnings from Windows builds.

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    Too minor to require h5committest
2004-07-01 15:02:47 -05:00
James Laird
eab58732d8 [svn-r8781]
Purpose:
HDF5 now supports SZIP with no encoder.

Description:
SZIP can be configured to have both encoder and decoder or just to have the decoder.  HDF5 can now query the configuration of any filter, and will throw errors if users try to write using a filter with encoding disabled.

Solution:
Added H5Zget_filter_info function, changed API for H5Pget_filter and H5P_get_filter_by_id.  See SZIP RFC.

Platforms tested:
Copper (fortran, C++, parallel), Sleipnir (C++), Arabica (fortran, C++), Verbena (fortran, C++)

Misc. update:
2004-07-01 12:38:04 -05:00
Pedro Vicente Nunes
2194263d1b [svn-r8659] Purpose:
bug fix

Description:
a prototype for a new function used by h5tools_str.c was accidently left in that file
the c++ treats this as an error

Solution:
removed the prototype, and pointed to the correct one (in h5tools_ref.h )

Platforms tested:
Free BSD (c++)
linux

Misc. update:
2004-06-11 10:04:48 -05:00
Pedro Vicente Nunes
78ca05e040 [svn-r8644] Purpose: h5dump new features
Description:

added the code for print strings with new line and display the path of references (new source files h5tools_ref.c and .h )
added a test suite in testh5dump.sh.in for
( note : to create testh5dump.sh , one must redo ./configure; this detects the availability of filters
and generates  testh5dump.sh accordingly)
1) storage layout
2) fill value
3) print reference with path
4) print strings with new lines
5) filters

Solution:

Platforms tested:
linux
solaris
AIX

Misc. update:
2004-06-10 12:35:48 -05:00
Raymond Lu
9e9bdad5e9 [svn-r8563] *** empty log message *** 2004-05-21 10:58:53 -05:00
Quincey Koziol
0a29514b9d [svn-r8383] Purpose:
Code cleanup

Description:
    Clean up lots of warnings based on those reported from the SGI compilers
as well as gcc.

Platforms tested:
    SGI O3900, IRIX64 6.5 (Cheryl's SGI machine)
    FreeBSD 4.9 (sleipnir) w/ & w/o parallel
    h5committest
2004-04-17 23:10:09 -05:00
Quincey Koziol
1b147875db [svn-r8151] Purpose:
Bug fix

Description:
    Fix h5tools routines to not try to call MPI_Init() unless an MPI-based
VFD is actually used.

Platforms tested:
    FreeBSD 4.9 (sleipnir) w/parallel
    Linux 2.4 (verbena) w/parallel
2004-02-04 17:43:00 -05:00
Quincey Koziol
233319898d [svn-r8143] Purpose:
New Feature.  (Contributed by Robb)

Description:
    Allow h5ls to specify a VFL with the '--vfl=' command line flag.

    Add MPI-I/O & MPI-POSIX VFL drivers to list of drivers available for
h5ls and h5dump.

Platforms tested:
    FreeBSD 4.9 (sleipnir) w/parallel
    h5committested
2004-02-01 22:32:41 -05:00
Quincey Koziol
324cd9d1e2 [svn-r7616] Purpose:
Code cleanup

Description:
    Change field member count and indices for compound and enumerated types from
'int' to 'unsigned' to better reflect actual use.

    Cleaned up a few other minor compiler warnings, etc.

Platforms tested:
    FreeBSD 4.9 (sleipnir)
    Linux 2.4 (verbena)
    too minor to require h5committest
2003-10-13 14:31:33 -05:00
Raymond Lu
7e79a8d71e [svn-r7507] *** empty log message *** 2003-09-24 14:26:50 -05:00
Quincey Koziol
32220914a5 [svn-r7401] Purpose:
Code cleanup

Description:
    Remove various "fixtype" routines which duplicate (and actually pre-date)
    the functionality in H5Tget_native_type in favor of having the tools call
    H5Tget_native_type().  This provides the same functionality (actually better
    functionality, since the old "fixtype" routines didn't handle alignment of
    compound fields correctly) and reduces the amount of code to maintain.

    Add additional tests to dump out a "complex" compound datatype which
    exercises more code in the library for aligning compound fields correctly.

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    h5committest
2003-08-25 15:00:56 -05:00
Quincey Koziol
4032cbf360 [svn-r7326] Purpose:
Refactored code

Description:
    Chased 'objno' and 'fileno' changes in H5G_stat_t structure, including
updating the addresses displayed.

Platforms tested:
    h5committested
2003-08-08 14:37:55 -05:00
Raymond Lu
0d22a663df [svn-r7265] *** empty log message *** 2003-07-25 21:55:47 -05:00
Quincey Koziol
01e9075358 [svn-r7211] Purpose:
Code cleanup

Description:
    Various code cleanups suggested by lint tool

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    h5committest
2003-07-11 13:06:51 -05:00
Quincey Koziol
06f27f99b0 [svn-r7192] Purpose:
Code cleanup

Description:
    Clean up various minor warnings in the library.

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    too small to need h5committest
2003-07-09 14:16:17 -05:00
Raymond Lu
67449f5c65 [svn-r7021] Purpose: bug fix
Description: H5Tget_native_type fails for multiple kinds of datatype on Cray; it fails
             fix-length string type, too.


Platforms tested: Cray, h5committest
2003-06-10 16:04:58 -05:00
Quincey Koziol
212a9529b0 [svn-r7003] Purpose:
Code cleanup/new features.

Description:
    Clean up whitespace & formatting.

    Make the -S (simple) output display a dataset's modification time in UTC
        rather than local timezone.

    Display variable-length datatype information.

    Simplified & enhanced bitfield datatype information displayed.


Platforms tested:
    FreeBSD 4.8 (sleipnir)
    h5committest
2003-06-09 14:22:55 -05:00
Pedro Vicente Nunes
e9e6cf0c2b [svn-r6913] Purpose:
bug fix and enhancement


Description:
combined the --simple option to the display of NATIVE datatypes
with the -S option , the print of the datatype will always display the full description
making it possible to do an automatic test for catching differences on output

made the case for printing the type of bitfield data, which was not handled

the new test generates a dataset with 10 attributes, each one a different datatype

Platforms tested:


Windows 2000 (octopus)
Linux 2.4 (rockaway)
SunOS 5.7 (arabica)
IRIX 6.5 (modi4)



Misc. update:
2003-05-22 17:31:07 -05:00
Pedro Vicente Nunes
c26a0bc516 [svn-r6903] Purpose:
bug fix

Description:
when the list attribute function was called with values of type reference, the format string was not initialized
causing a segmentation fault on printf

Solution:
initialized the string  ( with obj no and file no turned on )

Platforms tested:

Windows 2000 (octopus)
Linux 2.4 (rockaway)
SunOS 5.7 (arabica)
IRIX 6.5 (modi4)



Misc. update:
2003-05-19 15:11:45 -05:00
Bill Wendling
bd16546ad0 [svn-r6543] Purpose:
Update

Description:
    Updated copyright statement

Platforms tested:
    Linux (only comment change)

Misc. update:
2003-03-31 13:08:23 -05:00
Robb Matzke
76f7bb10ac [svn-r6179] ./hdf5-devel/tools/h5ls/h5ls.c
Purpose:
    New Feature; Optimization; Clean-up
    (Merged from 1.4 branch)

Description:
    There is no symbolic constant to pass to functions that take an
    optional object ID for when the caller wants to indicate no object
    ID. In the past the caller always passed a negative integer.

    GPFS performs poorly.

    The h5ls tool decides whether to list the file name in the output
    based on a compile-time choice, which isn't always optimal at run
    time.

Solution:
    Added a symbolic constant H5I_INVALID_HID.

    Added code to tell the mmfsd of GPFS to forego byte range token
    prefetching.

    h5ls decides whether to print the file name at runtime based on
    the number of objects being listed.

Platforms tested:
    SuSE Linux (arborea), gcc and mpich-1.2.4
    SunOS (baldric), gcc


2002-12-03 23:00:35 Robb Matzke  <matzke@arborea.spizella.com>
	* main: Replaced the H5LS_PREPEND_FILENAME compile-time symbol which was
	   always defined, with a runtime decision. If h5ls is
	   invoked with more than one argument then the file name
	   is displayed as part of the object name, otherwise the
	   file name is not displayed.
2002-12-04 10:44:07 -05:00
Albert Cheng
73683e4380 [svn-r5278] Purpose:
Migrate from configure macros of XYZ_ABC to H5_XYZ_ABC
Description:
    configure generates many macros definitions on the fly and
    were stored in src/H5config.h which is included by H5public.h.
    But other software that uses hdf5 may also run their own configure.
    There can be a clash in macro name space.  We decided awhile ago
    to prepend all generated macros with "H5_" to avoid conflicts.
    The process has started and this commit completes it (at least attempt
    to).
Solution:
    Many macros symbols (e.g. SIZEOF_xxx and HAVE_xxx were changed to
    H5_SIZEOF_xxx and H5_HAVE_xxx).  Then H5private.h no longer includes
    H5config.h.  This cuts H5config.h away from HDF5 source code.
Pending issues:
    The module of fortran and pablo are to be resolved in a different
    commit.
Platforms tested:
    eirene (parallel), arabica (solaris 7 --enable-fortran, --enable-cxx)
2002-04-28 03:34:17 -05:00
Quincey Koziol
e5fc40662c [svn-r5219] Purpose:
Code cleanup

Description:
    Clean up warnings from gcc 3.1

Platforms tested:
    FreeBSD 4.5 (sleipnir)
2002-04-22 12:48:24 -05:00
Quincey Koziol
ef9c40754b [svn-r5200] Purpose:
Code Cleanup

Description:
    Clean up compiler warnings from the last bunch of checkins

Platforms tested:
    FreeBSD 4.5 (sleipnir)
2002-04-18 09:05:38 -05:00
Robb Matzke
9606ebdfc7 [svn-r5143] ./hdf5-devel/tools/h5ls/h5ls.c
Minor h5ls bugfix for compound types with array members.
(Similar changes shortly for 1.4 branch).


2002-04-04 16:39:09 Robb Matzke  <matzke@arborea.spizella.com>
	* display_cmpd_type: Removed code to display array dimensions from display_cmpd_type()
	   since this was a holdover from the days when hdf5
	   didn't have an array datatype and was duplicated by
	   display_array_type().
2002-04-05 14:42:58 -05:00
Robb Matzke
84f632178c [svn-r4898] ./hdf5-devel/tools/h5ls/h5ls.c
Fixed copyright notice
2002-02-01 14:05:14 -05:00
Robb Matzke
378df38955 [svn-r4892] ./hdf5-devel/tools/h5ls/h5ls.c
2002-01-31 15:22:24 Robb Matzke  <matzke@arborea.spizella.com>
	*: Displays array data type information instead of saying `4-byte
	   class-10 unknown'.
2002-01-31 14:47:06 -05:00
Quincey Koziol
d456c2bb82 [svn-r4643] Purpose:
Code cleanup
Description:
    Windows is generating hundreds of warnings from some of the practices in
    the library.  Mostly, they are because size_t is 32-bit and hsize_t is
    64-bit on Windows and we were carelessly casting the larger values down to
    the smaller ones without checking for overflow.

    Also, some other small code cleanups,etc.

Solution:
    Re-worked some algorithms to eliminate the casts and also added more
    overflow checking for assignments and function parameters which needed
    casts.

    Kent did most of the work, I just went over his changes and fit them into
    the the library code a bit better.

Platforms tested:
    FreeBSD 4.4 (hawkwind)
2001-11-27 11:29:13 -05:00
Quincey Koziol
ed663577a5 [svn-r4473] Purpose:
Code cleanup for better compatibility with C++ compilers
Description:
    C++ compilers are choking on our C code, for various reasons:
        we used our UNUSED macro incorrectly when referring to pointer types
        we used various C++ keywords as variables, etc.
        we incremented enum's with the ++ operator.
Solution:
    Changed variables, etc.to avoid C++ keywords (new, class, typename, typeid,
        template)

    Fixed usage of UNUSED macro from this:
        char UNUSED *c
    to this:
        char * UNUSED c

    Switched the enums from x++ to x=x+1
Platforms tested:
    FreeBSD 4.4 (hawkwind)
2001-09-25 12:46:32 -05:00
Bill Wendling
88729d4c14 [svn-r4282]
Purpose:
    Bug Fix/Feature Add
Description:
    Added new flag ("-f" and "--family") to allow user to specify which
    file driver to use to open the file. If they don't specify anything,
    then it defaults to the old behaviour of trying each driver in turn
    until one actually opens the file.

    If the driver the user specified doesn't succeed in opening the
    file, then we do NOT try other file drivers.
Platforms tested:
    Linux
2001-07-30 16:55:46 -05:00
Quincey Koziol
990fadfbe5 [svn-r4181] Purpose:
Bug Fix, Code Cleanup, Code Optimization, etc.
Description:
    Fold in the hyperslab speedups, clean up compile warnings and change a
    few things from using 'unsigned' or 'hsize_t' to use 'size_t' instead.
Platforms tested:
    FreeBSD 4.3 (hawkwind), Solaris 2.7 (arabica), Irix64 6.5 (modi4)
2001-07-10 16:19:18 -05:00
Quincey Koziol
d41b9fffdf [svn-r4012] Purpose:
Clean up compiler warnings.
Description:
    Just code neatening mostly, some casts, etc.
Platforms tested:
    FreeBSD 4.3 (hawkwind)
2001-06-18 15:22:10 -05:00
Bill Wendling
6c130407eb [svn-r3768] Purpose:
Update
Description:
    Replaced "#include <hdf5_file.h>" with the equivalent, but better
    #include "hdf5_file.h" so that gcc can pick up our header files more
    easily.
Platforms tested:
    Linux
2001-04-03 12:47:08 -05:00
Bill Wendling
690a3fa068 [svn-r3574] Purpose:
Update
Description:
    Updated to reflect the new naming of APIs in the h5tools library.
    I.e., things which were once named "h5dump_*" now have the "h5tools_"
    prefix instead.
Platforms tested:
    Linux
2001-03-08 15:22:08 -05:00
Bill Wendling
2821175f3f [svn-r3489] Purpose:
Code Movement
Description:
    Moved tools code into their own separate subdirectories
Platforms tested:
    Linux, Kelgia
2001-02-22 16:53:56 -05:00