Commit Graph

15622 Commits

Author SHA1 Message Date
Allen Byrne
04634520cf Update CMake java functions 2016-09-15 13:32:01 -05:00
Binh-Minh Ribler
052efd9bde Merge pull request #11 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cppapi:develop to develop
Purpose: Code cleanup
Description:
    - Used FP_EPSILON in comparing float values to verify read data
    - Casted C macro to fix mismatched types in verify_val calls
Platforms tested:
    Linux/32 2.6 (jam), Linux/64 (platypus), Darwin (osx1010test)

* commit '478f771243b4e7b7c416dde22b5dcde13e1f3541':
  Purpose: Code cleanup Description:     - Used FP_EPSILON in comparing float values to verify read data     - Casted C macro to fix mismatched types in verify_val calls Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
2016-09-07 12:25:34 -05:00
Larry Knox
e2f7b36b36 Merge pull request #18 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '03169f5b19e64ab568e13bc883ef5047542b632e':
  Restrict git commit hash in tar file names to first 7 characters with --short option.
2016-09-06 14:05:33 -05:00
Allen Byrne
2c6720aacb Merge pull request #17 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '9bcb5305db7226d06076aef5aada8c07fff1c41c':
  Add longer timeout to cache tests - test has consistently exceeded default timing.
2016-09-06 14:05:03 -05:00
lrknox
03169f5b19 Restrict git commit hash in tar file names to first 7 characters with
--short option.
2016-09-06 13:14:45 -05:00
Allen Byrne
9bcb5305db Add longer timeout to cache tests - test has consistently exceeded
default timing.
2016-09-06 10:13:28 -05:00
Larry Knox
d9489260e4 Merge pull request #14 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '49ea5bd2a9f23d53f94377457376c91f51e1d287':
  Removed -p option from invocation of autogen.sh by h5vers script to allow running h5vers on machines without /usr/hdf/bin/AUTOTOOLS.
2016-09-02 15:52:23 -05:00
lrknox
49ea5bd2a9 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2016-09-02 15:42:31 -05:00
lrknox
78096ab08a Removed -p option from invocation of autogen.sh by h5vers script to
allow running h5vers on machines without /usr/hdf/bin/AUTOTOOLS.
2016-09-02 15:40:53 -05:00
Larry Knox
f6e22b669e Merge pull request #12 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '1bad18cc24e0108dea2a9e48402bba9d32e3b96c':
  Add bin/pkgscrpts files to MANIFEST.
  dd bin/pkgscrpts directory with scripts to package deployed unix binaries into tarfiles.
2016-09-02 13:07:11 -05:00
lrknox
1bad18cc24 Add bin/pkgscrpts files to MANIFEST. 2016-09-02 12:57:27 -05:00
lrknox
96e9dccf3e dd bin/pkgscrpts directory with scripts to package deployed unix binaries
into tarfiles.
2016-09-02 11:02:10 -05:00
Larry Knox
eb45597647 Merge pull request #9 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop
* commit 'a4c60918a741e029c9ace1a8737f414cc0f49903':
  Added .gitignore and .gitattributes files with contents from the last git mirror or the hdf5 repository prior to the manual migration of the hdf5 svn repository to the git repository in bitbucket. Added entries to MANIFEST for the 2 new files.
2016-09-02 08:40:59 -05:00
Binh-Minh Ribler
478f771243 Purpose: Code cleanup
Description:
    - Used FP_EPSILON in comparing float values to verify read data
    - Casted C macro to fix mismatched types in verify_val calls
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-09-01 22:14:22 -05:00
lrknox
a4c60918a7 Added .gitignore and .gitattributes files with contents from the last
git mirror or the hdf5 repository prior to the manual migration of the
hdf5 svn repository to the git repository in bitbucket.
Added entries to MANIFEST for the 2 new files.
2016-09-01 16:15:15 -05:00
Allen Byrne
130e0a6638 Merge pull request #7 in HDFFV/hdf5 from ~BYRN/hdf5_adb:bugfix/HDFFV-9431-cpp_testhdf5 to develop
* commit '9842d2ae5f5956ea29e55c4e8d4ce9709882c879':
  Add VFD name to test folder
2016-09-01 15:22:17 -05:00
Allen Byrne
9842d2ae5f Add VFD name to test folder 2016-09-01 11:08:18 -05:00
Larry Knox
09642faf32 Merge pull request #6 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop
* commit '5372b04bab6e36df2c3aa641307c2a93eccc35e9':
  Merge pull request #4 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_8 to hdf5_1_8
2016-08-31 12:38:54 -05:00
Larry Knox
5372b04bab Merge pull request #4 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_8 to hdf5_1_8
* commit '5aee5213190f145b5a734f5dc76a67c82f7d6b82':
  emoved .gitattributes and .gitignore, as the manual migration did not create them. Corrected bbrelease script  to create new release version with revision hash.
  Translate svn commands to git commands for chkmanifest and bbrelease scripts with source in git repository. Removed the -p option from the command to run autogen.sh.  It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS.  The autogen.sh script says the option is for HDF group use only and is likely to be removed.  The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
  Removed the -p option from the command to run autogen.sh.  It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS.  The autogen.sh script says the option is for HDF group use only and is likely to be removed.  The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
2016-08-31 12:17:06 -05:00
Larry Knox
095d4fd2cb Merge pull request #3 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop
* commit 'b368f0de8d53ca536e95f71d88504cd1ee3ea33c':
  Removed the -p option from the command to run autogen.sh.  It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS.  The autogen.sh script says the option is for HDF group use only and is likely to be removed.  The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
2016-08-31 11:49:21 -05:00
Allen Byrne
dce6ead200 Merge pull request #2 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '203b2b2e75816bfd0f4d54ecd2cb1f41b1247447':
  Windows returns -1 instaed of 255 as on linux for the test
2016-08-30 12:56:46 -05:00
lrknox
b368f0de8d Removed the -p option from the command to run autogen.sh. It interfered
with running chkmanifest on a machine with the correct autotools
versions but without access to /usr/hdf/bin/AUTOTOOLS.  The autogen.sh
script says the option is for HDF group use only and is likely to be
removed.  The same effect can be achieved by adding
/usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
2016-08-30 10:58:12 -05:00
Allen Byrne
203b2b2e75 Windows returns -1 instaed of 255 as on linux for the test 2016-08-30 10:27:07 -05:00
Allen Byrne
3b878ea9d9 Merge pull request #1 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop
* commit 'ba5652ffc27be96fa7275b039ce2c8e249751657':
  Translate svn commands to git commands for chkmanifest and bbrelease scripts with source in git repository.
2016-08-29 17:01:20 -05:00
lrknox
ba5652ffc2 Translate svn commands to git commands for chkmanifest and bbrelease
scripts with source in git repository.
2016-08-29 16:42:53 -05:00
Allen Byrne
b947f7e911 [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters.
Verified by user, who reported issue.
2016-08-25 13:57:27 -05:00
Vailin Choi
169014d154 [svn-r30319] Fix for daily test failure on emu -m64 for the checkin #30310.
Tested on emu (-m64 & -m32), platypus, mayll, moohan, osx1010test, quail, kituo, ostrich, kite.
2016-08-24 15:12:18 -05:00
Allen Byrne
42d55a0f7d [svn-r30318] whitespace cleanup 2016-08-24 14:50:39 -05:00
Allen Byrne
2d6dd8ea64 [svn-r30317] Whitespace cleanup 2016-08-24 14:47:56 -05:00
Allen Byrne
4b471dea84 [svn-r30316] Use dns name for CDash instead of ip address 2016-08-22 13:31:38 -05:00
Allen Byrne
241dc68b48 [svn-r30315] HDFFV-9972: Fix test reference and change default for H5Iget_name in JNI API. 2016-08-22 13:07:01 -05:00
Allen Byrne
3c331b231a [svn-r30314] HDFFV-9971: Change the usage of a CMake variable for the build type to the recommended variable name. Updated documentation. 2016-08-22 12:22:38 -05:00
Allen Byrne
737bb56735 [svn-r30313] HDFFV-9972: unsatisfied link error under debug on Windows.
Added windows name suffix for debug to CMake cmd_arg for examples and test.
Fix issues discovered under debug testing;
   Create a version of H5Iget_name that correctly returns the name.
   Rework PIN_JAVA_STRING macro and usage to eliminate possible memory leaks by using if-else instead of mid-routine return.
   Update example to use new H5Iget_name API.
   
   Tested: windows under debug
2016-08-22 12:05:00 -05:00
Allen Byrne
f14e4b3e20 [svn-r30312] HDFFV-9706: Commit changes as discussed in HDF5-379. 2016-08-22 11:36:59 -05:00
Binh-Minh Ribler
b1c4fd77d9 [svn-r30311] Purpose: Fix bug HDFFR-9920 cont.
trunk:
Description:
    Continued rearranging the classes to model the relationship of HDF5
    objects more accurately.  The changes included:
    - in the baseclass list of Attribute, changed "public IdComponent" to
      "public H5Location", because location sometime can be specified with
      attribute
    - moved H5A wrappers in H5Location to H5Object because H5A functions
      can't be called on attribute id
    - removed the stubs Attribute::iterateAttrs and Attribute::renameAttr
    - removed Attribute::getFileName and Attribute::flush, because
          H5Location has them
    - result of the modified partial class diagram, regarding Attribute

                                IdComponent
                                     |
                                H5Location   AbstractDs
                                /       \   /
                        H5Object     Attribute
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-22 01:29:29 -05:00
Vailin Choi
ae18cf66d8 [svn-r30310] Fix daily test failure for previous checkin #30308.
Tested on platypus and mayll.
2016-08-21 19:21:20 -05:00
Binh-Minh Ribler
c78f1ec882 [svn-r30309] Purpose: Fix bug HDFFR-9920
Description:
    Rearranged the classes to model the relationship of HDF5 objects more
    accurately.  The changes included:
    - moved CommonFG's methods to Group
    - removed CommonFG from Group's base class list
    - removed CommonFG from H5File's base class list and changed
      "public H5Location" to "public Group" in the base class list
    - CommonFG became unused
    - result of the modified partial class diagram:

                                IdComponent
                                     |
                                H5Location
                                /
                        H5Object
                           |
                        /  /  \
                DadaType Group DataSet
                          |
                        H5File
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-19 23:34:26 -05:00
Vailin Choi
c8af99f530 [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute which is a compound datatype consisting of
a variable length string.
Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
2016-08-19 15:58:16 -05:00
Dana Robinson
c58ca9e28b [svn-r30306] Updated vfd test to be better about fapls and h5_reset().
Prevents the test from segfaulting in other sub-tests
when a previous test fails.

Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
           Autotools serial + direct VFD (vfd test only)
           Also tested with a forced error to ensure
           that the test no longer segfaults and 
           confirmed that all test files are cleaned up.
2016-08-19 11:30:05 -05:00
Dana Robinson
00c508dc68 [svn-r30303] Fixed unbalanced parentheses in H5F_SAME_SHARED macro.
This version of the macro isn't used anywhere in the
HDF5 source.

Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
           Autotools serial
2016-08-18 14:09:42 -05:00
Scot Breitenfeld
79b14e8b4d [svn-r30301] Changed the print ordering of the SIZE_OF/KIND program output in order to match what is done in cmake.
Tested: gnu, jelly.
2016-08-18 13:53:24 -05:00
Scot Breitenfeld
5010195435 [svn-r30300] Fixed the ordering for KIND and SIZE_OF in the fortarn program in order to match the sed commands.
Should only matter for the NAG compiler.

Tested: (gnu, jelly)
2016-08-18 13:24:02 -05:00
Dana Robinson
6d7ac8aa15 [svn-r30297] Changed FAIL_STACK_ERROR to TEST_ERROR in test/vfd.c.
Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
           Autotools serial, vfd test only
2016-08-18 09:20:03 -05:00
Dana Robinson
9f163e69f5 [svn-r30295] Minor whitespace cleanup in h5test.c.
Tested on: 64-bit Ubuntu 16.04 LTS w/ gcc 5.4.0
           Autotools serial w/ make check-vfd
2016-08-17 13:59:45 -05:00
Quincey Koziol
e10e6721a6 [svn-r30292] Description:
Correct failure on older Windows compilers.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-08-16 09:02:21 -05:00
Vailin Choi
197b29ced6 [svn-r30289] Fix for HDFFV-9960 H5DOappend without append callback.
This is the second part of the fix--see crucible review HDF5-383.
Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
2016-08-14 18:02:49 -05:00
Quincey Koziol
f40381b0ea [svn-r30285] Description:
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-08-13 04:23:53 -05:00
Binh-Minh Ribler
ae0b749012 [svn-r30279] Purpose: Code improvement (HDFFR-9725)
Description:
    Removed deprecated functions in previous releases due to missing const.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-12 01:55:43 -05:00
Neil Fortner
7ee176d29b [svn-r30275] Rework test_mf_bug1 to work with multi and split drivers.
Tested: ummon
2016-08-09 16:36:01 -05:00
Binh-Minh Ribler
b3017997a8 [svn-r30272] Purpose: Code improvement
Description:
    - Added "const" to arguments that should be const
    - Added "const" to const functions, i.e., function that don't change
      the objects they operate on.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-09 00:29:50 -05:00