Commit Graph

13720 Commits

Author SHA1 Message Date
Scot Breitenfeld
4a428e25b8 [svn-r24636] typesetting changes for documentation 2014-01-17 16:10:29 -05:00
Neil Fortner
132601ba46 [svn-r24635] Change some range check assertions to errors in H5HF_man_remove in an attempt
to aid in diagnosing issue HDFFV-8647.

Tested: ummon
2014-01-16 16:31:26 -05:00
Allen Byrne
0ff7eb5cda [svn-r24632] Correct name of package location variable 2014-01-16 14:12:02 -05:00
Allen Byrne
1596d15623 [svn-r24631] Update change to relative install location for linux 2014-01-16 13:58:49 -05:00
Scot Breitenfeld
d4d0407a87 [svn-r24623] Enabled test for
HDFFV-8268 Fortran wrapper for H5Fget_file_image function

Tested: jam (pgi compilers)
        h5committest
2014-01-08 15:21:32 -05:00
Allen Byrne
d8b13f60ff [svn-r24621] Update files for changes to installation vars on windows. 2014-01-07 15:02:21 -05:00
Albert Cheng
f30276c462 [svn-r24617] Changed --old to --script as directed by Allen.
Tested: jam (only verify help message is correct and --script is invoked
correctly.)
2014-01-07 14:31:02 -05:00
Mohamad Chaarawi
6ceb9711b8 [svn-r24612] fix bugs in parallel tests exposed in corner cases when running with 1
or 2 processes.

First bug is in testpar/t_mdset.c, where the test reports an error in
addition to skipping the test if there are less than three procs. Fix
to just skip the test.

Second bug is in testpar/t_dset.c in actual_io_mode tests, where
incorrect expected value for IO mode was set if the number of procs
running the test is 1.

tested with h5committest.
2014-01-06 12:56:45 -05:00
Scot Breitenfeld
1febc8a453 [svn-r24611] This is a partial fix for HDFFV-8634. It fixes the problem without --enable-fortran2003, where the optional parameter should not be given as an option for an interface to a C function. --enable-fortran2003 does not work due to a compiler bug in intel 14.0
Tested: kite (intel 14.0 with --enable-fortran)
2014-01-06 10:53:56 -05:00
Albert Cheng
0a128b20a6 [svn-r24604] Feature: HDFFV-8336
Changed to use the quick steps described in INSTALL_CMake.txt.
Previous version is available by --old.
Added a help page to explain how to use.
Added a fix to figure out the current HDF5 version and use that to find the
correct file for install. (Still need to figure out the platform name.)

Tested: Jam and Koala
2014-01-01 13:31:36 -05:00
Mohamad Chaarawi
cdcf54a614 [svn-r24598] allocate and use the H5AC_aux_t struct even if num_procs == 1. This
was a bug exposed by running a single process with a program that
generates lots of dirty metadata that needs to be flushed.

h5committest done!
2013-12-30 15:22:28 -05:00
Allen Byrne
92d4f32514 [svn-r24588] Add sunos compile option changes 2013-12-19 09:55:17 -05:00
Allen Byrne
6a77f9821b [svn-r24505] Correct MacOSX bundle packaging 2013-12-05 15:46:09 -05:00
Allen Byrne
ebb6e8e3be [svn-r24504] HDFFV-8629: disable test until review is complete 2013-12-05 12:53:00 -05:00
Allen Byrne
0cffc628ba [svn-r24492] Correct autotools path 2013-12-03 16:47:56 -05:00
Allen Byrne
3b23b7eb1a [svn-r24487] HDFFV-8629: repack plugin_none test files.
CMake only until library updates approved.
2013-12-03 08:31:05 -05:00
Allen Byrne
008f2e4017 [svn-r24484] Update version and test name. 2013-12-02 16:00:22 -05:00
Allen Byrne
99a54a3056 [svn-r24483] Commit change from 1.8.12 src patch 2013-12-02 15:46:37 -05:00
Allen Byrne
624a466600 [svn-r24482] HDFFV-8635: remove test of whole file and just test dsets that have szip compression.
Tested local linux with cmake and autotools
2013-12-02 15:32:22 -05:00
Allen Byrne
5e695ce4bc [svn-r24481] HDFFV-8635: disable test because of szip causing different read call then expected. 2013-12-02 14:31:25 -05:00
Quincey Koziol
2d79ba29ed [svn-r24480] Description:
Bring r24479 from 1.8 branch to trunk:

    Fix ph5diff worker command handling so it can correctly respond to
situations where there's no work to perform.  Also, a few minor code cleanups.

Tested on:
    Mac OSX/64 10.9.0 (amazon) w/parallel
    (too minor to require h5committest)
2013-11-30 13:10:36 -05:00
Quincey Koziol
0a506a625b [svn-r24476] Description:
Remove duplicate "intent" flags from top & shared file structures, leaving
    them only in the shared file structure.

Tested on:
    Mac OSX/64 10.9.0 (amazon) w/gcc 4.8, both parallel & serial
    (too minor to require h5committest)
2013-11-30 00:51:42 -05:00
Allen Byrne
a25c08e9e2 [svn-r24472] remove line for file that does not exist 2013-11-27 11:34:03 -05:00
Allen Byrne
2f097704ca [svn-r24471] JAVA-1798: Add the testfiles for hdf-java and the h5dump tests including the test to read filter data.
Tested: cmake and autotools - local linux
2013-11-27 11:01:16 -05:00
Allen Byrne
6c90fd5b0b [svn-r24467] tfilters.h5 was created and checked in on 21 Feb 05, rev 10060, and never regenerated. The code for scaleoffset continued to change and the number of params for scaleoffset changed from 7 to 20 on the checkin of 23 Mar 05, rev 10384.
The h5dump tests only looked at headers and never the data. Data reads would fail with invalid number of params (7 expected 20).
Regenerated file and replacement ddls updated.
New h5dump test will be added to read the data.
2013-11-26 17:08:09 -05:00
HDF Tester
bc09cdc302 [svn-r24465] Snapshot version 1.9 release 169 2013-11-24 22:31:26 -05:00
Raymond Lu
200e48e08c [svn-r24463] Issue 8484 - Segfault during H5Fopen of corrupt file. I put a condition check to make sure a pointer isn't NULL.
Tested on jam - very simple change.
2013-11-22 15:59:07 -05:00
Allen Byrne
21cecf09fa [svn-r24432] Update examples package install location and text files 2013-11-12 16:31:01 -05:00
Dana Robinson
3a976e0aa7 [svn-r24416] Fixed some compiler warnings in the dsets test.
Tested on:
    32-bit LE linux (jam)

(These are just minor casting changes in the tests, hence the minimal
testing.)
2013-11-07 16:19:53 -05:00
Allen Byrne
93197c0257 [svn-r24412] Updated information on how to build examples with cmake installed binary. 2013-11-07 13:37:49 -05:00
Allen Byrne
43690b681c [svn-r24411] Correct file generation 2013-11-07 11:45:25 -05:00
Allen Byrne
8190a5e4b3 [svn-r24408] Add compound integer tests files
Tested: local linux cmake
2013-11-06 13:28:12 -05:00
Allen Byrne
132dfca7d0 [svn-r24403] Cleanup temp test files 2013-11-04 16:12:29 -05:00
Elena Pourmal
7aa4a180e4 [svn-r24400] Maintenance: When the libraries are built and tested in place, several files are left
behind by "make distclean" (see below); modified appropriate Makefile.am files and ran
             bin/reconfigure to create Makefile.in to fix the problem.

Here is the list of the files "make disclean" doesn't remove:

       tools/h5dump/testfiles
       tools/h5repack/testfiles/h5diff_attr1.h5
       tools/h5repack/testfiles/tfamily00000.h5
       tools/h5repack/testfiles/tfamily00010.h5
       tools/h5repack/testfiles/tfamily00002.h5
       tools/h5repack/testfiles/tfamily00004.h5
       tools/h5repack/testfiles/tfamily00006.h5
       tools/h5repack/testfiles/tfamily00008.h5
       tools/h5repack/testfiles/tfamily00001.h5
       tools/h5repack/testfiles/tfamily00003.h5
       tools/h5repack/testfiles/tfamily00005.h5
       tools/h5repack/testfiles/tfamily00007.h5
       tools/h5repack/testfiles/tfamily00009.h5
       tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.err-sav
       tools/h5jam/testfiles/h5jam-help.txt.err-sav
       tools/h5jam/testfiles/h5unjam-help.txt.err-sav
       tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.out-sav
       tools/h5jam/testfiles/h5jam-help.txt.out-sav
       tools/h5jam/testfiles/h5unjam-help.txt.out-sav
       hl/fortran/test/dsetf5.h5
       c++/test/tattr_multi.h5
       c++/test/tattr_scalar.h5
       c++/test/tfattrs.h5
       c++/test/tattr_basic.h5
       c++/test/tattr_compound.h5
       c++/test/tattr_dtype.h5

Tested on jam and emu in place and using srcdir with the svn stat command.

This fix doesn't address two problems:

tool/h5dump/testfiles directory is not removed by "make distclean" and it should be
tools/misc/testfiles directory is removed by "make distclean" and it shouldn't be
2013-11-02 20:21:23 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00
Dana Robinson
2136f11a47 [svn-r24390] Fixed a redefinition of HDfree in the HL library.
Tested on:
    32-bit LE linux (jam)

There are no behavior changes, so testing was minimal.
2013-11-01 12:13:00 -05:00
Allen Byrne
a3f7f83ed9 [svn-r24385] Add missing H5_ prefix
Tested: local linux
2013-10-31 09:39:37 -05:00
Dana Robinson
0aa06db0a4 [svn-r24380] The parallel test code now uses HDfree, HDmalloc, and HDcalloc
exclusively.

Part of the preparation for a fix for HDFFV-8551.

Tested on:
    32-bit LE linux (jam) w/ parallel and Fortran.

There are no behavior changes, so testing was minimal.
2013-10-31 02:44:00 -05:00
Dana Robinson
89f2019ecf [svn-r24378] Fixed some commenting typos in configure.ac and reconfigured.
Tested on:
    32-bit LE linux (jam) 

There are no code changes.  A build/test was done just to confirm.
2013-10-31 00:24:22 -05:00
Dana Robinson
e6cace9ee4 [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.
Prep work for adding a memory free function, part of HDFFV-8551.

Tested on:
    32-bit LE linux (jam) 
        * with C++, Fortran
        * with thread safety on

    These are minor changes (almost entirely renaming foo functions
    to HDfoo) that don't change functionality.  This should not
    require a full commit test.
2013-10-30 23:20:36 -05:00
Raymond Lu
2eb24b16da [svn-r24368] Issue 8147 - clang's -fcatch-undefined-behavior exposed undefined behavior in the alignment detection algorithm for integers in H5detect.c. Quincey decided to solve it in two steps. First, catch illegal instruction signal in the original algorithm. Second, use POSIX __alignof function to detect alignment if it's available. This checkin is the first step.
Tested on wren, jam, ostrich, platypas, and koala.
2013-10-28 16:25:46 -05:00
HDF Tester
56803a1970 [svn-r24362] Snapshot version 1.9 release 168 2013-10-27 04:33:34 -05:00
Raymond Lu
277ee2f7ee [svn-r24360] Jira issue 8528: H5Fget_obj_ids overfilled the list of object IDs by one. This is the second round of checkin after
receiving review comments from people. I put the safeguard in both H5F_get_objects and H5F_get_objects_cb to prevent 
overfill the list.

tested with h5committest.
2013-10-25 14:26:08 -05:00
Dana Robinson
b7a4e1a44e [svn-r24358] Changed the big test so that it runs using the h5_fileaccess() fapl.
The previous behavior was to execute a sec2, stdio, and family
test everytime it ran, which was very inefficient under check-vfd.

Tested on:
    32- and 64-bit LE linux (jam and koala)
    64-bit BE linux (ostrich)
    64-bit OS-X 10.6 (fred)
2013-10-24 23:57:01 -05:00
HDF Tester
8538cf61f9 [svn-r24334] Snapshot version 1.9 release 167 2013-10-20 04:21:31 -05:00
Dana Robinson
e9203a73e2 [svn-r24333] Added a few volatile keywords to H5detect.c to quiet Visual Studio warnings. Also added a void to a Windows-specific function.
These are both trivial changes that don't affect behavior.

Tested on: Visual Studio 2010 on 64-bit Windows 7
2013-10-19 18:43:06 -05:00
Raymond Lu
2aec2ec315 [svn-r24317] Fixed a typo. 2013-10-17 14:50:13 -05:00
Raymond Lu
28574d0bc7 [svn-r24307] Issue 8147: CLANG compiler with the options -fcatch-undefined-behavior and -ftrapv
catches some defined behavior in the alignment algorithm of the macro DETECT_I      
  in H5detect.c. I documented it as a known problem.

No test is needed.
2013-10-16 16:38:56 -05:00
Binh-Minh Ribler
370e6f3f56 [svn-r24291] Description:
- Added a lot of documentation to classes for Reference Manual.
    - Fixed some format inconsistencies
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    Linux/64 2.6 (koala)/PGI compilers
2013-10-15 00:31:20 -05:00
Allen Byrne
82beeef272 [svn-r24289] Correct linux shared version numbering 2013-10-14 11:43:16 -05:00