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Author SHA1 Message Date
Binh-Minh Ribler
0247f7b78d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop 2019-01-25 00:20:28 -06:00
Binh-Minh Ribler
51e0107d18 Added data file for test and updated MANIFEST 2019-01-25 00:19:16 -06:00
Binh-Minh Ribler
2fe69e7639 Merge pull request #1479 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_fixbug:develop to develop 
HDFFV-10586 and HDFFV-10588

* commit '25cd1ab02b9ddaf58a4f5422f4ab4fde411e050a':
  Added test for HDFFV-10588
  Fixed HDFFV-10684
  Fixed HDFFV-10586 and HDFFV-10588 Description:     HDFFV-10586 CVE-2018-17434  Divide by zero inh5repack_filters         Added a check for zero value     HDFFV-10588 CVE-2018-17437  Memory leak in H5O_dtype_decode_helper         This is actually an Invalid read issue.  It was found that the         attribute name length in an attribute message was corrupted,         which caused the buffer pointer to be advanced too far and later         caused an invalid read.         Added a check to detect attribute name and its length mismatch.  The         fix is not perfect, but it'll reduce the chance of this issue when a         name length is corrupted or the attribute name is corrupted. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1010test)
 2019-01-24 17:07:57 -06:00
Binh-Minh Ribler
25cd1ab02b Added test for HDFFV-10588 
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1010test)
 2019-01-24 09:42:19 -06:00
Allen Byrne
f0e2fc6c62 Merge pull request #1491 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'f033214796c383a9018dd760e92257dc27d7b852':
  Add clear objects to ignore tests
  Add clear objects to ignore tests
  Add new clear tests to ignore list
  Cleanup variable names
  HDFFV-10685 Correct syntax
  HDFFV-10685 Corrected version
  HDFFV-10685 Always set Mac version flags - use soversion
 2019-01-22 16:59:50 -06:00
Allen Byrne
f033214796 Add clear objects to ignore tests 2019-01-22 16:30:37 -06:00
Allen Byrne
182e5f7556 Add clear objects to ignore tests 2019-01-22 16:26:43 -06:00
Allen Byrne
036a8e4fe1 Add new clear tests to ignore list 2019-01-22 16:18:22 -06:00
Allen Byrne
cdf9cb0efb Cleanup variable names 2019-01-22 15:38:32 -06:00
Allen Byrne
91249b9ad5 HDFFV-10685 Correct syntax 2019-01-22 12:54:34 -06:00
Allen Byrne
ff08bed268 HDFFV-10685 Corrected version 2019-01-22 12:29:45 -06:00
Allen Byrne
ce64bf57ce HDFFV-10685 Always set Mac version flags - use soversion 2019-01-22 12:10:09 -06:00
Larry Knox
811b4bea8e Merge pull request #1489 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'e6be5560882c2f598b3a0ddab7d9d29a552fcb10':
  MPI vars need passed in, change to grepTest
 2019-01-20 22:36:26 -06:00
Binh-Minh Ribler
d584b233a5 Fixed HDFFV-10684 
Description:
    The test for HDFFV-10588 has revealed a bug in H5Ewalk.
    H5Ewalk did not stop midway even when the call back function returns
    H5_ITER_STOP. This is because a condition is missing from the for
    loops in H5E__walk causing the callback functions unable to stop until
    all the errors in the stack are iterated. Quincey advised on the final
    fix.  In this fix, "status" is switched to "ret_value" and HGOTO_ERROR
    to HERROR, and the for loops won't continue when "ret_value" is not 0.
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1010test)
 2019-01-20 17:46:28 -06:00
Allen Byrne
e6be556088 MPI vars need passed in, change to grepTest 2019-01-20 16:47:50 -06:00
Allen Byrne
0c15df15e3 Merge pull request #1485 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '769837f3ae93f4cae3486aef95c1c580a9946406':
  Add parrallel runTest.cmake for ph5example
  Add missing depends to last test
  Fix CMake policy 54 warnings
  TRILABS-105 Fix CMake policy 54 warnings
 2019-01-18 21:49:05 -06:00
Allen Byrne
769837f3ae Add parrallel runTest.cmake for ph5example 2019-01-18 16:30:36 -06:00
Allen Byrne
ab2ab38fa6 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'eeea2b91729b57a0cdec301312bd5713941ab2c6':
  Fix typo
 2019-01-18 13:33:00 -06:00
Allen Byrne
eeea2b9172 Merge pull request #1484 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop 
* commit '2cf543b2941442a45a4cb878d4fb33c8c69188a2':
  Fix typo
 2019-01-18 13:32:18 -06:00
Allen Byrne
f5a194ce58 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'c5b19f3dd2eb4144e614105e30bf149b5324e014':
  Fix missing depends for last repart test
 2019-01-18 12:57:42 -06:00
Allen Byrne
2cf543b294 Fix typo 2019-01-18 12:57:15 -06:00
Allen Byrne
c5b19f3dd2 Merge pull request #1483 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop 
* commit '13d1568c3f491b1dfe6254f22f04fece29b6dad2':
  Fix missing depends for last repart test
 2019-01-18 12:53:49 -06:00
Allen Byrne
13d1568c3f Fix missing depends for last repart test 2019-01-18 12:27:21 -06:00
Allen Byrne
a578e36038 Add missing depends to last test 2019-01-18 12:25:38 -06:00
Allen Byrne
8adbf2552b Fix CMake policy 54 warnings 2019-01-18 12:16:38 -06:00
Allen Byrne
f25e78ad42 TRILABS-105 Fix CMake policy 54 warnings 2019-01-18 11:55:16 -06:00
Dana Robinson
f81103e89e Merge pull request #1482 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:valgrind_fixes to develop 
* commit 'a4e63bb98072868a145c45e8247280ebc86c3a6d':
  Fixed a memory issue flagged by valgrind in the direct_chunk test.
 2019-01-18 10:40:44 -06:00
Dana Robinson
a4e63bb980 Fixed a memory issue flagged by valgrind in the direct_chunk test. 2019-01-16 21:37:07 -08:00
Quincey Koziol
ab0fa80994 Merge pull request #1481 in HDFFV/hdf5 from reduce_cache_image_num_groups to develop 
* commit '47fb7c2ee6541bb006e76c34966102ebbdaec587':
  Update usage for FAPLs, and reduce # of groups for smoke checks
 2019-01-16 11:27:53 -06:00
Quincey Koziol
47fb7c2ee6 Update usage for FAPLs, and reduce # of groups for smoke checks 2019-01-16 10:36:25 -06:00
Binh-Minh Ribler
43bd93c4f5 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop 2019-01-15 11:49:07 -06:00
Binh-Minh Ribler
bc3d878add Fixed HDFFV-10586 and HDFFV-10588 
Description:
    HDFFV-10586 CVE-2018-17434  Divide by zero inh5repack_filters
        Added a check for zero value
    HDFFV-10588 CVE-2018-17437  Memory leak in H5O_dtype_decode_helper
        This is actually an Invalid read issue.  It was found that the
        attribute name length in an attribute message was corrupted,
        which caused the buffer pointer to be advanced too far and later
        caused an invalid read.
        Added a check to detect attribute name and its length mismatch.  The
        fix is not perfect, but it'll reduce the chance of this issue when a
        name length is corrupted or the attribute name is corrupted.
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1010test)
 2019-01-15 11:48:31 -06:00
Allen Byrne
5fdc01ae99 Merge pull request #1476 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'fe5650727c55e44e2605b667ac35f74993834643':
  Correct fix for new policy
  Fix for new policy
 2019-01-14 13:54:39 -06:00
Allen Byrne
fe5650727c Correct fix for new policy 2019-01-14 13:11:17 -06:00
Allen Byrne
a7aaf073d2 Fix for new policy 2019-01-14 12:13:03 -06:00
Quincey Koziol
703acba51f Merge pull request #1471 in HDFFV/hdf5 from fix_daily_test_on_platypus to develop 
* commit '3a31d37abb1fe390d4e28502e7de3ad6da092970':
  Work around compiler fussiness on platypus.
 2019-01-11 19:31:48 -06:00
Quincey Koziol
3a31d37abb Work around compiler fussiness on platypus. 2019-01-11 10:11:31 -06:00
Quincey Koziol
ef3c3970fb Merge pull request #1468 in HDFFV/hdf5 from merge_hyperslab_updates_02 to develop 
* commit '4729d04d9123e8cd6b2bba071695ace7ddd2a7b5':
  Delta reduction against hyperslab_updates branch.
 2019-01-11 09:58:46 -06:00
Quincey Koziol
4729d04d91 Delta reduction against hyperslab_updates branch. 2019-01-10 23:08:51 -06:00
Dana Robinson
b9c8ddbfcc Merge pull request #1465 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop 
* commit 'b82ced10619731125b9db7b1ac36f3844463df9a':
  Fix for Fortran failures.
 2019-01-10 20:39:29 -06:00
Dana Robinson
b82ced1061 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into develop 2019-01-10 19:43:43 -06:00
Dana Robinson
8522539a9e Fix for Fortran failures. 2019-01-10 19:43:17 -06:00
Quincey Koziol
0843353176 Merge pull request #1464 in HDFFV/hdf5 from vol_wrapping_apis to develop 
* commit '6d897f3c10241cbc50a728870d58269d15e36984':
  Add API routines to wrap and retrieve objects
 2019-01-10 18:29:26 -06:00
Quincey Koziol
6d897f3c10 Add API routines to wrap and retrieve objects 2019-01-10 18:00:13 -06:00
Allen Byrne
a7e0ef996a Merge pull request #1462 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '9b0281736ca488387afd8a301e36e6f5a5315c4a':
  Fix deprecated H5Pget_version
  Fix regex
 2019-01-09 13:18:11 -06:00
Allen Byrne
9b0281736c Fix deprecated H5Pget_version 2019-01-09 12:55:31 -06:00
Allen Byrne
7b39e544c0 Fix regex 2019-01-09 12:05:40 -06:00
Scot Breitenfeld
f75d25707d Merge pull request #1461 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop 
* commit 'b3743a44238c284dc3817652271aa1475e3c4946':
  fixed 8 byte integer issue
  fix for xlf compiler
 2019-01-09 11:38:12 -06:00
M. Scot Breitenfeld
b3743a4423 fixed 8 byte integer issue 2019-01-09 11:21:56 -06:00
M. Scot Breitenfeld
8a8cb2fbb5 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-01-09 10:40:28 -06:00