1381 Commits

Author SHA1 Message Date
Allen Byrne
1602e1fbfe
Remove autotools files and docs (#5358) 2025-03-14 13:28:44 -05:00
Matt L
331c000e6a
Add H5Tdecode2, rename and deprecate H5Tdecode (#5213) 2025-01-24 08:13:43 -06:00
jhendersonHDF
af0b2315bd
Remove const from testing parameters in testframe framework (#5214)
Makes testing parameters specified with AddTest non-const again when
passed to test functions. This allows test functions to update their
parameters during execution and is particularly useful for tests
which use those parameters to accumulate statistics, error counts,
etc. without resorting to global variables.
2025-01-08 13:33:00 -06:00
Dana Robinson
ed082ac981
Fix 'unused parameter' warnings in C++ tests (#5199) 2025-01-02 10:09:46 -08:00
Dana Robinson
00adfce7a4
Remove duplicate MESSAGE macro (#5200)
* Removes duplicate macro from C++ code
* Hides global variables behind accessor functions
2025-01-02 10:11:17 -06:00
Dana Robinson
be3f2995dc
Fix flipped calloc args (#5198)
* Fix flipped calloc args in C++ tests
2025-01-02 10:09:45 -06:00
Dana Robinson
8f2c03b2da
Remove the hash_size param from H5Iregister_type() (#5170)
The hash_size parameter of H5Iregister_type() hasn't been used since 1.8.
It's been removed and the API call has been versioned.

This PR also updates the make_vers script to handle v2.0.0.

Fixes #4344
2024-12-10 00:34:40 -08:00
H. Joe Lee
ac04b8698f
Fix typo masquarading (#5093) 2024-11-13 20:04:44 -08:00
Scot Breitenfeld
35df4fb6a6
Fix parsing error of h(p)*c wrappers (#5060)
Add quotes to correctly handle whitespace.
2024-11-02 12:40:07 -07:00
jhendersonHDF
90429f5e7d
Implement support for complex number datatypes (#4630)
* Implement support for complex number datatypes

Adds the new datatype class H5T_COMPLEX

Adds the new API function H5Tcomplex_create which creates a complex
number datatype from an ID of a base floating-point datatype

Adds the new feature check macros H5_HAVE_COMPLEX_NUMBERS and
H5_HAVE_C99_COMPLEX_NUMBERS

Adds the new datatype size macros H5_SIZEOF_FLOAT_COMPLEX,
H5_SIZEOF_DOUBLE_COMPLEX and H5_SIZEOF_LONG_DOUBLE_COMPLEX

Adds the new datatype ID macros H5T_NATIVE_FLOAT_COMPLEX,
H5T_NATIVE_DOUBLE_COMPLEX, H5T_NATIVE_LDOUBLE_COMPLEX,
H5T_CPLX_IEEE_F16LE, H5T_CPLX_IEEE_F16BE,
H5T_CPLX_IEEE_F32LE, H5T_CPLX_IEEE_F32BE,
H5T_CPLX_IEEE_F64LE and H5T_CPLX_IEEE_F64BE

Adds hard and soft datatype conversion paths between complex number
datatypes and all the integer and floating-point datatypes, as well as
between other complex number datatypes

Adds a special conversion path between complex number datatypes and
array or compound datatypes where the in-memory layout of data is the
same between the datatypes and data can be converted directly

Adds support for complex number datatypes to the h5dump, h5ls and
h5diff/ph5diff tools. Allows h5dump '-m' option to change floating-point
printing format for float complex and double complex datatypes, as well
as long double complex if it has the same size as double complex

Adds minimal support to the h5watch and h5import tools

Adds support for the predefined complex number datatypes and
H5Tcomplex_create function to the Java wrappers. Also adds initial,
untested support to the JNI for future use with HDFView

Adds support for just the H5T_COMPLEX datatype class to the Fortran
wrappers

Adds support for the predefined complex number datatypes and
H5Tcomplex_create function to the high level library H5LT interface
for use with the H5LTtext_to_dtype and H5LTdtype_to_text functions

Changes some usages of "complex" in the library since it conflicts with
the "complex" keyword from the complex.h header. Also changes various
usages of the word "complex" throughout the library to distinguish
compound datatypes from complex datatypes.
2024-10-31 13:54:25 -07:00
Allen Byrne
5425a571e0
Convert develop to v2.0.0 (#5006)
Switches previous 1.16/17/18 values to 2.0
2024-10-27 21:51:07 -07:00
Dana Robinson
7f1e49206d
Renamed COPYING to LICENSE (#4978)
This is where most people will expect to find license information. The
COPYING_LBNL_HDF5 file has also been renamed to LICENSE_LBNL_HDF5.
The licenses are unchanged.
2024-10-18 21:13:04 -07:00
Scot Breitenfeld
610648efd2
The h5(p)*c parser retains escaped whitespace character (#4967) 2024-10-18 09:03:42 -07:00
Dana Robinson
1c23395bd6
Remove TRUE and FALSE from H5private.h (#4969)
* Remove TRUE and FALSE from H5private.h

* Replace hbool_t with bool in test code
2024-10-18 07:57:34 -07:00
vchoi-hdfgroup
9df4c0dad4
Fix for issue #4849 that settings in fapl libver bounds causes unexpe… (#4939)
* Fix for issue #4849 that settings in fapl libver bounds causes unexpected H5Fopen failures.
File with non-SWMR-write access can now be opened without regard for superblock version.
Due to the fix, H5Fstart_swmr_write() also needs to be modified as well as the tests for libver bounds.
The "RFC: Setting Bounds for Object Creation in HDF5 1.10.0" is also updated to reflect the changes.

* Fix c++ libver bound test failure.
2024-10-11 07:38:22 -05:00
jhendersonHDF
302ba0a7f7
Minor refactoring of testframe.c testing framework (#4930)
Added setup and cleanup callback parameters to TestInit() to perform
setup and cleanup tasks once for whole test program

Removed TestCleanup() function since its functionality is covered by
PerformTests()

Added check of the HDF5_NOCLEANUP environment variable in
GetTestCleanup()
2024-10-07 12:27:09 -05:00
Dana Robinson
54f8f12ed9
Update clang-format to 17 (#4931)
Also bump the clang-format GitHub actions to 17
2024-10-04 19:49:35 -07:00
Allen Byrne
07756c87f5 Update develop to 1.18 API 2024-10-02 19:53:38 -05:00
jhendersonHDF
34d6ef545a
Refactor h5test.c, testframe.c and testpar.h testing frameworks (#4891)
Added new testframe.h header to document testing framework functions and
split them away from h5test.h and from test programs that don't
integrate with the testframe.c testing framework

Added new test setup callback to testframe.c testing framework

Added parameters to AddTest() to specify size of test parameters so they
can be copied for later use

Enabled HDF5 error stacks in testframe.c framework by default and added
some error stack suppressions to some testhdf5 tests

Added new maxthreads option to testframe.c framework to allow specifying
the maximum number of threads a multi-threaded test can use

Moved TestExpress functionality out of testframe.c and into more general
h5test.c for wider use by tests through getter and setter

Updated some tests to not mix and match functionality between h5test.c/h
and testframe.c/h

Moved some functionality from testphdf5.h into testpar.h for parallel
tests that aren't part of testphdf5

Added new parallel test library that contains common shared
functionality for parallel tests (similar to h5test library)
2024-10-01 16:10:03 -05:00
Allen Byrne
f77b70859f
Rework Dynamic Analysis and sanitize testing (#4681)
* Ignore predetermined failing test and check pointer before use

* Rework Analysis process
2024-08-05 09:53:53 -05:00
Allen Byrne
162f01292c
Rework the TestExpress usage and refactor dead code (#4590) 2024-06-20 14:01:43 -07:00
Allen Byrne
dca6370691
Move C++ and Fortran and examples to HDF5Examples folder (#4552) 2024-06-08 06:46:09 -05:00
Dana Robinson
f44fa558f2
Clean up off_t --> HDoff_t stragglers (#4555)
* off_t --> HDoff_t in test

* off_t --> HDoff_t in h5ls, h5dump, & h5repack

* Minor off_t tweak to configure.ac

* off_t --> HDoff_t fixes in src

This changes the type of the offset parameter in H5Pget_external()
to HDoff_t to match H5Pset_external(), along with other minor tweaks.

* off_t --> HDoff_t in C++ wrappers

* Fix off_t usage in Java wrapper
2024-06-07 17:25:06 -07:00
Allen Byrne
162e7d676d
Allow HDF5_LIB_INFIX to work with DLL (#4500)
* Allow HDF5_LIB_INFIX to work with DLL

* Separate individual library name into parts and add suffix option

* Java cannot use alternative names and removed extra setting

* Incorporate the underscore into the CORE name
2024-05-28 08:27:15 -07:00
Julien Schueller
ea76013648
H5Group: Fix operator= (#4473)
Closes #4472
2024-05-10 16:30:19 -05:00
Scot Breitenfeld
527ab8c2fd
Removed duplicate entries in compile line for h5* compiler wrappers (#4360)
* h5fc remove duplicate args
* h5 wrappers remove duplicate args
2024-04-09 17:01:00 -07:00
Allen Byrne
aa08f39e64
Remove obsolete c++ doxygen config files (#4358) 2024-04-09 14:04:01 -07:00
jhendersonHDF
30c1bbdfe7
Initialize a variable in C++ testhdf5's tattr.cpp (#4232) 2024-03-24 23:15:01 -07:00
jhendersonHDF
10e0d39b6d
Avoid file size checks in C++ testhdf5 for certain VFDs (#4226) 2024-03-24 15:13:05 -05:00
Jouke Witteveen
cfb1c798b9
Don't set the rpath when linking statically (#4125) 2024-03-13 08:03:21 -07:00
Dana Robinson
0ea1d7280b
Clean up off_t usage (#4095)
* Add comments to C++ and Fortran API calls that use off_t
* Remove noise casts for small integers
2024-03-09 09:06:10 -08:00
Dana Robinson
d4c84f8d0a
Fix the last C++ stack size warning (#4099) 2024-03-09 09:05:37 -08:00
Sean McBride
16255aa8c3
Fixed -Wdeprecated-copy-dtor warnings by implementing a copy assignment operator (#3306)
Example warning was:

warning: definition of implicit copy assignment operator for 'Group' is deprecated because it has a user-declared destructor [-Wdeprecated-copy-dtor]
2024-03-08 21:09:47 -08:00
Allen Byrne
0be892585a
Rename incorrectly named option (#4067)
* Rename incorrectly named option

* Restore the correct uses of USING_MEMCHECKER

* Update release note
2024-03-05 09:07:16 -08:00
Sean McBride
623907f397
Modern C++ dtor declarations (#1830)
* C++ dtor modernization

- Replaced a bunch of empty dtors with `= default`
- Removed deprecated `throw()`. In C++11, dtors are `noexcept` by default.

*
2024-02-09 11:29:55 -06:00
Scot Breitenfeld
3a3501df2d
h5 compiler wrappers now pass all arguments passed to it to the compile line (#3954)
* The issue was that the "allargs" variable was not being used in the final command of the compiler wrapper. Any entries containing an escaped quote (\", \') or other non-matching argument (*) would not be passed to the compile line. I have fixed this problem by ensuring all arguments passed to the compiler wrapper are now included in the compile line.

* added testing for compiler wrappers
2024-01-30 12:20:58 -06:00
Allen Byrne
3ea21ccb3e
Add HDF5_DISABLE_TESTS_REGEX option to skip tests (#3859) 2023-11-22 07:51:30 -06:00
Robert Adam
87b3e7c821
Don't build util tests when HDF5_EXTERNALLY_CONFIGURED=ON (#3781)
Fixes #3780
2023-10-30 12:47:06 -05:00
jhendersonHDF
e64c946e14
Correct comments about H5Z_FILTER_NONE (#3572) 2023-09-22 08:46:19 -05:00
Dana Robinson
44a00ef876
Strip HD prefix from string/char C API calls (#3540)
* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup
2023-09-15 15:13:18 -07:00
Mark Kittisopikul
426a7f82f6
Avoid truncating at null byte when copying to std::string (#3083)
---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-15 23:31:57 -05:00
Dana Robinson
39e6bf48c9
Remove HD from HDmem* calls (#3211) 2023-06-29 12:33:46 -07:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210)
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
2023-06-29 12:13:29 -07:00
Dana Robinson
aebac33a1f
Remove HD from memory allocate/free calls (#3195)
* HDcalloc
* HDfree
* HDmalloc
* HDrealloc
2023-06-28 15:48:12 -07:00
Dana Robinson
187ea8a9ae
Rename HD(f)printf() to (f)printf() (#3194) 2023-06-28 08:31:32 -07:00
Sean McBride
65d8c93470
Many fixes to various compiler warnings (#3124)
* Fixed various -Wmissing-variable-declarations by adding static keyword
* In a few cases, renamed the variable suffix from _g to _s.
* Fixed some -Wmissing-variable-declarations by using different declaration macros
* Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero
* Fixed various -Wcomma warnings
* Fixed clang -Wstrict-prototypes warnings
* Fixed various -Wunused-variable warnings
* Updated some casts to fix the only 3 -Wcast-qual warnings
* Fixed the only -Wsometimes-uninitialized warning
2023-06-18 22:13:38 -07:00
Sean McBride
68eba3da69
Many clang -Wextra-semi-stmt fixes (#2537)
* Adds semicolons to function-like macros
* Adds a do..while(0) loop to some macros
* Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
2023-06-15 21:49:02 -07:00
Allen Byrne
4b228ec6af
Fix CMake generator expression syntax (#2909) 2023-05-05 15:57:40 -05:00
Quincey Koziol
49a71463a0
Comment cleanup (#2689)
* Clean up content and redundant logging in comments.
2023-04-11 09:41:32 -05:00
Allen Byrne
526f0769a3
Minor fixes for CMake code and install docs (#2623) 2023-04-03 14:38:10 -07:00