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HDFFV-10876 Update dump to match DDL spec

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This commit is contained in:
Allen Byrne 2019-12-05 17:20:48 -06:00
parent 4747e2f2ad
commit e8ad5f6d1a
16 changed files with 1481 additions and 1377 deletions
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6
java/test/TestH5.java
View File

@ -80,7 +80,7 @@ public class TestH5 {
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32LE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
@ -364,9 +364,9 @@ public class TestH5 {
try {
if (H5did >= 0)
H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
H5.H5Dwrite(H5did, HDF5Constants.H5T_STD_I32LE,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data[0]);
HDF5Constants.H5P_DEFAULT, dset_data);
}
catch (Exception e) {
e.printStackTrace();

3
java/test/testfiles/JUnit-TestH5.txt
View File

@ -1,6 +1,7 @@
JUnit version 4.11
.testH5get_libversion_null_param
.testJ2C
.testH5export_dataset
.testIsSerializable
.testH5garbage_collect
.testH5error_off
@ -12,5 +13,5 @@ JUnit version 4.11
Time: XXXX
OK (10 tests)
OK (11 tests)

2
tools/lib/h5tools_dump.c
View File

@ -4030,6 +4030,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *
h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
if (H5Tget_class(f_type) == H5T_REFERENCE) {
ctx->indent_level++;
h5tools_context_t datactx = *ctx; /* print context */
H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "reference class type");
if (!H5Tequal(f_type, H5T_STD_REF) && !H5Tequal(f_type, H5T_STD_REF_DSETREG) && !H5Tequal(f_type, H5T_STD_REF_OBJ)) {
@ -4263,6 +4264,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_context_t *
} /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */
HDfree(ref_buf);
}
ctx->indent_level--;
}
else {
h5tools_context_t datactx = *ctx; /* print context */

3
tools/lib/h5tools_str.c
View File

@ -1363,7 +1363,7 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info,
H5TOOLS_PUSH_STACK();
H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "enter");
h5tools_str_append(str, " ");
h5tools_str_append(str, " \"");
buf_size = H5Rget_file_name(ref_vp, NULL, 0);
H5TOOLS_DEBUG(H5E_tools_min_dbg_id_g, "buf_size=%ld", buf_size);
if (buf_size) {
@ -1401,6 +1401,7 @@ h5tools_str_sprint_reference(h5tools_str_t *str, const h5tool_format_t *info,
HDfree(attr_name);
}
}
h5tools_str_append(str, "\"");
CATCH
H5TOOLS_ENDDEBUG(H5E_tools_min_dbg_id_g, "exit");

12
tools/test/h5repack/CMakeTests.cmake
View File

@ -85,6 +85,9 @@
${HDF5_TOOLS_DIR}/testfiles/tfamily00009.h5
${HDF5_TOOLS_DIR}/testfiles/tfamily00010.h5
${HDF5_TOOLS_DIR}/testfiles/tordergr.h5
# reference conversion files
${HDF5_TOOLS_DIR}/testfiles/tattrreg.h5
${HDF5_TOOLS_DIR}/testfiles/tdatareg.h5
# tools/testfiles/vds
${HDF5_TOOLS_DIR}/testfiles/vds/1_a.h5
${HDF5_TOOLS_DIR}/testfiles/vds/1_b.h5
@ -148,6 +151,9 @@
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/3_1_vds.h5-vds_chunk2x5x8-v
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/4_vds.h5-vds_compa-v
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/4_vds.h5-vds_conti-v
# refs
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/attrregion.tattrreg.h5
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/dataregion.tdatareg.h5
)
foreach (h5_file ${LIST_HDF5_TEST_FILES})
@ -1468,6 +1474,12 @@
endif ()
ADD_H5_VERIFY_VDS (vds_conti ${TESTTYPE} 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
################################################################
# reference new api conversions
###############################################################
ADD_H5_DMP_TEST (attrregion "TEST" 0 tattrreg.h5)
ADD_H5_DMP_TEST (dataregion "TEST" 0 tdatareg.h5)
##############################################################################
### V E R S I O N B O U N D S T E S T S
##############################################################################

46
tools/test/h5repack/testfiles/attrregion.tattrreg.h5.ddl Normal file
View File

@ -0,0 +1,46 @@
HDF5 "out-attrregion.tattrreg.h5" {
GROUP "/" {
DATASET "Dataset1" {
DATATYPE H5T_STD_I32LE
DATASPACE NULL
STORAGE_LAYOUT {
CONTIGUOUS
SIZE 0
OFFSET 18446744073709551615
}
FILTERS {
NONE
}
FILLVALUE {
FILL_TIME H5D_FILL_TIME_IFSET
VALUE H5D_FILL_VALUE_DEFAULT
}
ALLOCATION_TIME {
H5D_ALLOC_TIME_LATE
}
ATTRIBUTE "Attribute1" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_DSETREG }
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
}
}
DATASET "Dataset2" {
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
STORAGE_LAYOUT {
CONTIGUOUS
SIZE 100
OFFSET 2048
}
FILTERS {
NONE
}
FILLVALUE {
FILL_TIME H5D_FILL_TIME_IFSET
VALUE H5D_FILL_VALUE_DEFAULT
}
ALLOCATION_TIME {
H5D_ALLOC_TIME_LATE
}
}
}
}

42
tools/test/h5repack/testfiles/dataregion.tdatareg.h5.ddl Normal file
View File

@ -0,0 +1,42 @@
HDF5 "out-dataregion.tdatareg.h5" {
GROUP "/" {
DATASET "Dataset1" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_DSETREG }
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
STORAGE_LAYOUT {
CONTIGUOUS
SIZE 48
OFFSET 6244
}
FILTERS {
NONE
}
FILLVALUE {
FILL_TIME H5D_FILL_TIME_IFSET
VALUE H5D_FILL_VALUE_UNDEFINED
}
ALLOCATION_TIME {
H5D_ALLOC_TIME_LATE
}
}
DATASET "Dataset2" {
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
STORAGE_LAYOUT {
CONTIGUOUS
SIZE 100
OFFSET 2048
}
FILTERS {
NONE
}
FILLVALUE {
FILL_TIME H5D_FILL_TIME_IFSET
VALUE H5D_FILL_VALUE_UNDEFINED
}
ALLOCATION_TIME {
H5D_ALLOC_TIME_LATE
}
}
}
}

2016
tools/testfiles/tarray1_big.ddl
View File

File diff suppressed because one or more lines are too long

26
tools/testfiles/tattrreg.ddl
View File

@ -9,19 +9,19 @@ GROUP "/" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_DSETREG }
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
DATA {
DATASET tattrreg.h5/Dataset2 {
REGION_TYPE BLOCK (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
DATASET tattrreg.h5/Dataset2 {
REGION_TYPE POINT (6,9), (2,2), (8,4), (1,6), (2,8), (3,2),
(0,4), (9,0), (7,1), (3,3)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
NULL
NULL
DATASET "tattrreg.h5/Dataset2" {
REGION_TYPE BLOCK (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
DATASET "tattrreg.h5/Dataset2" {
REGION_TYPE POINT (6,9), (2,2), (8,4), (1,6), (2,8), (3,2),
(0,4), (9,0), (7,1), (3,3)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
NULL
NULL
}
}
}

62
tools/testfiles/tattrregR.ddl
View File

@ -9,39 +9,39 @@ GROUP "/" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_DSETREG }
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
DATA {
DATASET tattrreg.h5/Dataset2 {
REGION_TYPE BLOCK (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
DATA {
66, 69, 72, 75, 78, 81,
96, 99, 102, 105, 108, 111,
126, 129, 132, 135, 138, 141,
156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201,
216, 219, 222, 225, 228, 231
DATASET "tattrreg.h5/Dataset2" {
REGION_TYPE BLOCK (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
DATA {
66, 69, 72, 75, 78, 81,
96, 99, 102, 105, 108, 111,
126, 129, 132, 135, 138, 141,
156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201,
216, 219, 222, 225, 228, 231
}
}
}
DATASET tattrreg.h5/Dataset2 {
REGION_TYPE POINT (6,9), (2,2), (8,4), (1,6), (2,8), (3,2),
(0,4), (9,0), (7,1), (3,3)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
DATA {
207,
66,
252,
48,
84,
96,
12,
14,
213,
99
DATASET "tattrreg.h5/Dataset2" {
REGION_TYPE POINT (6,9), (2,2), (8,4), (1,6), (2,8), (3,2),
(0,4), (9,0), (7,1), (3,3)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
DATA {
207,
66,
252,
48,
84,
96,
12,
14,
213,
99
}
}
}
NULL
NULL
NULL
NULL
}
}
}

4
tools/testfiles/tattrreg_be.ls
View File

@ -3,12 +3,12 @@ Dataset1 Dataset {NULL}
Attribute: Attribute1 {4}
Type: dataset region reference
Data:
DATASET tattrreg.h5/Dataset2 {
DATASET "tattrreg.h5/Dataset2" {
REGION_TYPE BLOCK Blk0: (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
DATASET tattrreg.h5/Dataset2 {
DATASET "tattrreg.h5/Dataset2" {
REGION_TYPE POINT Pt0: (6,9), Pt1: (2,2), Pt2: (8,4),
Pt3: (1,6), Pt4: (2,8), Pt5: (3,2), Pt6: (0,4),
Pt7: (9,0), Pt8: (7,1), Pt9: (3,3)

4
tools/testfiles/tattrreg_le.ls
View File

@ -3,12 +3,12 @@ Dataset1 Dataset {NULL}
Attribute: Attribute1 {4}
Type: dataset region reference
Data:
DATASET tattrreg.h5/Dataset2 {
DATASET "tattrreg.h5/Dataset2" {
REGION_TYPE BLOCK Blk0: (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
DATASET tattrreg.h5/Dataset2 {
DATASET "tattrreg.h5/Dataset2" {
REGION_TYPE POINT Pt0: (6,9), Pt1: (2,2), Pt2: (8,4),
Pt3: (1,6), Pt4: (2,8), Pt5: (3,2), Pt6: (0,4),
Pt7: (9,0), Pt8: (7,1), Pt9: (3,3)

32
tools/testfiles/tbinregR.exp
View File

@ -1,17 +1,17 @@
66, 69, 72, 75, 78, 81,
96, 99, 102, 105, 108, 111,
126, 129, 132, 135, 138, 141,
156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201,
216, 219, 222, 225, 228, 231
207,
66,
252,
48,
84,
96,
12,
14,
213,
99
66, 69, 72, 75, 78, 81,
96, 99, 102, 105, 108, 111,
126, 129, 132, 135, 138, 141,
156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201,
216, 219, 222, 225, 228, 231
207,
66,
252,
48,
84,
96,
12,
14,
213,
99

26
tools/testfiles/tdatareg.ddl
View File

@ -4,19 +4,19 @@ GROUP "/" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_DSETREG }
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
DATA {
DATASET tdatareg.h5/Dataset2 {
REGION_TYPE BLOCK (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
DATASET tdatareg.h5/Dataset2 {
REGION_TYPE POINT (6,9), (2,2), (8,4), (1,6), (2,8), (3,2), (0,4),
(9,0), (7,1), (3,3)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
NULL
NULL
DATASET "tdatareg.h5/Dataset2" {
REGION_TYPE BLOCK (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
DATASET "tdatareg.h5/Dataset2" {
REGION_TYPE POINT (6,9), (2,2), (8,4), (1,6), (2,8), (3,2),
(0,4), (9,0), (7,1), (3,3)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
}
NULL
NULL
}
}
DATASET "Dataset2" {

62
tools/testfiles/tdataregR.ddl
View File

@ -4,39 +4,39 @@ GROUP "/" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_DSETREG }
DATASPACE SIMPLE { ( 4 ) / ( 4 ) }
DATA {
DATASET tdatareg.h5/Dataset2 {
REGION_TYPE BLOCK (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
DATA {
66, 69, 72, 75, 78, 81,
96, 99, 102, 105, 108, 111,
126, 129, 132, 135, 138, 141,
156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201,
216, 219, 222, 225, 228, 231
DATASET "tdatareg.h5/Dataset2" {
REGION_TYPE BLOCK (2,2)-(7,7)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
DATA {
66, 69, 72, 75, 78, 81,
96, 99, 102, 105, 108, 111,
126, 129, 132, 135, 138, 141,
156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201,
216, 219, 222, 225, 228, 231
}
}
}
DATASET tdatareg.h5/Dataset2 {
REGION_TYPE POINT (6,9), (2,2), (8,4), (1,6), (2,8), (3,2), (0,4),
(9,0), (7,1), (3,3)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
DATA {
207,
66,
252,
48,
84,
96,
12,
14,
213,
99
DATASET "tdatareg.h5/Dataset2" {
REGION_TYPE POINT (6,9), (2,2), (8,4), (1,6), (2,8), (3,2),
(0,4), (9,0), (7,1), (3,3)
DATATYPE H5T_STD_U8BE
DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) }
DATA {
207,
66,
252,
48,
84,
96,
12,
14,
213,
99
}
}
}
NULL
NULL
NULL
NULL
}
}
DATASET "Dataset2" {

512
tools/testfiles/treference.ddl
View File

@ -847,146 +847,146 @@ GROUP "/" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT }
DATASPACE SIMPLE { ( 2 ) / ( 2 ) }
DATA {
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
}
}
ATTRIBUTE "reference2D" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT }
DATASPACE SIMPLE { ( 3, 2 ) / ( 3, 2 ) }
DATA {
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
}
}
ATTRIBUTE "reference3D" {
DATATYPE H5T_REFERENCE { H5T_STD_REF_OBJECT }
DATASPACE SIMPLE { ( 4, 3, 2 ) / ( 4, 3, 2 ) }
DATA {
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET tattr2.h5/dset
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
DATA {
(0): 0, 0
}
DATASET "tattr2.h5/dset"
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