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[svn-r20771] Problem:
Test scripts sometimes need to filter some system-specific messages from the actual output so that it can match the correct expected output. These filtering functions, ususally called "STDOUT_FILTER()" and "STDERR_FILTER()" were being repeated in individual test scripts. This becomes a maintenance problem and is error prone. Solution: Extract the two filter functions code to bin/output_filter.sh and then each test script sources it in. This allows reuse of coding and is much easier to maintain and to add new filtering. Tested: LLNL Zeus (linux64 cluster) and Dawndev (Blue-Gene cluster), both for serial mode only. --This line, and those below, will be ignored-- M tools/misc/testh5mkgrp.sh M tools/h5dump/testh5dump.sh.in M tools/h5diff/testh5diff.sh M tools/h5copy/testh5copy.sh M tools/h5ls/testh5ls.sh.in M MANIFEST A bin/output_filter.sh
This commit is contained in:
Albert Cheng
parent
054ca47350
commit
e21992e08f
1
MANIFEST
1
MANIFEST
@ -70,6 +70,7 @@
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./bin/mkinstalldirs
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./bin/newer
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./bin/reconfigure _DO_NOT_DISTRIBUTE_
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./bin/output_filter.sh
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./bin/README _DO_NOT_DISTRIBUTE_
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./bin/release
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./bin/runtest _DO_NOT_DISTRIBUTE_
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101
bin/output_filter.sh
Normal file
101
bin/output_filter.sh
Normal file
@ -0,0 +1,101 @@
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## Copyright by The HDF Group.
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## All rights reserved.
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##
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## This file is part of HDF5. The full HDF5 copyright notice, including
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## terms governing use, modification, and redistribution, is contained in
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## the files COPYING and Copyright.html. COPYING can be found at the root
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## of the source code distribution tree; Copyright.html can be found at the
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## root level of an installed copy of the electronic HDF5 document set and
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## is linked from the top-level documents page. It can also be found at
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## http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
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## access to either file, you may request a copy from help@hdfgroup.org.
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# This contains function definitions of output filtering.
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# This file should only be sourced in by another shell script.
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#
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# Programmer: Albert Cheng
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# Created Date: 2011/5/3
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# Some systems will dump some messages to stdout for various reasons.
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# Remove them from the stdout result file.
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# $1 is the file name of the file to be filtered.
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# Cases of filter needed:
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# 1. Sandia Red-Storm
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# yod always prints these two lines at the beginning.
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# LibLustre: NAL NID: 0004a605 (5)
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# Lustre: OBD class driver Build Version: 1, info@clusterfs.com
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# 2. LANL Lambda
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# mpijob mirun -np always add an extra line at the end like:
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# P4 procgroup file is /users/acheng/.lsbatch/host10524.l82
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STDOUT_FILTER() {
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result_file=$1
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tmp_file=/tmp/h5test_tmp_$$
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# Filter Sandia Red-Storm yod messages.
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cp $result_file $tmp_file
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sed -e '/^LibLustre:/d' -e '/^Lustre:/d' \
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< $tmp_file > $result_file
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# Filter LANL Lambda mpirun message.
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cp $result_file $tmp_file
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sed -e '/^P4 procgroup file is/d' \
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< $tmp_file > $result_file
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# cleanup
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rm -f $tmp_file
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}
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# Some systems will dump some messages to stderr for various reasons.
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# Remove them from the stderr result file.
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# $1 is the file name of the file to be filtered.
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# Cases of filter needed:
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# 1. MPE:
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# In parallel mode and if MPE library is used, it prints the following
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# two message lines whether the MPE tracing is used or not.
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# Writing logfile.
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# Finished writing logfile.
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# 2. LANL MPI:
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# The LANL MPI will print some messages like the following,
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# LA-MPI: *** mpirun (1.5.10)
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# LA-MPI: *** 3 process(es) on 2 host(s): 2*fln21 1*fln22
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# LA-MPI: *** libmpi (1.5.10)
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# LA-MPI: *** Copyright 2001-2004, ACL, Los Alamos National Laboratory
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# 3. h5diff debug output:
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# Debug output all have prefix "h5diff debug: ".
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# 4. AIX system prints messages like these when it is aborting:
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# ERROR: 0031-300 Forcing all remote tasks to exit due to exit code 1 in task 0
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# ERROR: 0031-250 task 4: Terminated
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# ERROR: 0031-250 task 3: Terminated
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# ERROR: 0031-250 task 2: Terminated
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# ERROR: 0031-250 task 1: Terminated
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# 5. LLNL Blue-Gene mpirun prints messages like there when it exit non-zero:
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# <Apr 12 15:01:49.075658> BE_MPI (ERROR): The error message in the job record is as follows:
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# <Apr 12 15:01:49.075736> BE_MPI (ERROR): "killed by exit(1) on node 0"
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STDERR_FILTER() {
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result_file=$1
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tmp_file=/tmp/h5test_tmp_$$
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# Filter LLNL Blue-Gene error messages in both serial and parallel modes
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# since mpirun is used in both modes.
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cp $result_file $tmp_file
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sed -e '/ BE_MPI (ERROR): /d' \
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< $tmp_file > $result_file
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# Filter MPE messages
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if test -n "$pmode"; then
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cp $result_file $tmp_file
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sed -e '/^Writing logfile./d' -e '/^Finished writing logfile./d' \
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< $tmp_file > $result_file
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fi
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# Filter LANL MPI messages
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# and LLNL srun messages
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# and AIX error messages
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if test -n "$pmode"; then
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cp $result_file $tmp_file
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sed -e '/^LA-MPI:/d' -e '/^srun:/d' -e '/^ERROR:/d' \
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< $tmp_file > $result_file
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fi
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# Filter h5diff debug output
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cp $result_file $tmp_file
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sed -e '/^h5diff debug: /d' \
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< $tmp_file > $result_file
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# clean up temporary files.
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rm -f $tmp_file
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}
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@ -100,6 +100,9 @@ VERIFY_OUTPUT()
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echo "Verifying output files $* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Source in the output filter function definitions.
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. $srcdir/../../bin/output_filter.sh
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# Run a test and print PASS or *FAIL*. If h5copy can complete
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# with exit status 0, consider it pass. If a test fails then increment
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# the `nerrors' global variable.
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@ -184,6 +187,8 @@ TOOLTEST_FAIL()
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expectout="$INDIR/$1"
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actualout="$OUTDIR/$1.out"
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actualerr="$OUTDIR/$1.err"
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actualout_sav=${actualout}-sav
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actualerr_sav=${actualerr}-sav
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shift
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if [ "$1" = -i ]; then
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inputfile=$2
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@ -199,7 +204,13 @@ TOOLTEST_FAIL()
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#echo "#############################"
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$RUNSERIAL $H5COPY_BIN $@
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) > $actualout 2> $actualerr
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RET=$?
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# save actualout and actualerr in case they are needed later.
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cp $actualout $actualout_sav
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STDOUT_FILTER $actualout
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cp $actualerr $actualerr_sav
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STDERR_FILTER $actualerr
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if [ $RET != 0 ]; then
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echo " PASSED"
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# Verifying output text from h5copy
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@ -219,7 +230,7 @@ TOOLTEST_FAIL()
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# Clean up output file
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if test -z "$HDF5_NOCLEANUP"; then
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rm -f $actualout $actualerr
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rm -f $actualout $actualerr $actualout_sav $actualerr_sav
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fi
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}
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@ -143,80 +143,8 @@ TESTING() {
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echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Some systems will dump some messages to stdout for various reasons.
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# Remove them from the stdout result file.
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# $1 is the file name of the file to be filtered.
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# Cases of filter needed:
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# 1. Sandia Red-Storm
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# yod always prints these two lines at the beginning.
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# LibLustre: NAL NID: 0004a605 (5)
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# Lustre: OBD class driver Build Version: 1, info@clusterfs.com
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# 2. LANL Lambda
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# mpijob mirun -np always add an extra line at the end like:
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# P4 procgroup file is /users/acheng/.lsbatch/host10524.l82
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STDOUT_FILTER() {
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result_file=$1
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tmp_file=/tmp/h5test_tmp_$$
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# Filter Sandia Red-Storm yod messages.
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cp $result_file $tmp_file
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sed -e '/^LibLustre:/d' -e '/^Lustre:/d' \
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< $tmp_file > $result_file
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# Filter LANL Lambda mpirun message.
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cp $result_file $tmp_file
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sed -e '/^P4 procgroup file is/d' \
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< $tmp_file > $result_file
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# cleanup
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rm -f $tmp_file
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}
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# Some systems will dump some messages to stderr for various reasons.
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# Remove them from the stderr result file.
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# $1 is the file name of the file to be filtered.
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# Cases of filter needed:
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# 1. MPE:
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# In parallel mode and if MPE library is used, it prints the following
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# two message lines whether the MPE tracing is used or not.
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# Writing logfile.
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# Finished writing logfile.
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# 2. LANL MPI:
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# The LANL MPI will print some messages like the following,
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# LA-MPI: *** mpirun (1.5.10)
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# LA-MPI: *** 3 process(es) on 2 host(s): 2*fln21 1*fln22
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# LA-MPI: *** libmpi (1.5.10)
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# LA-MPI: *** Copyright 2001-2004, ACL, Los Alamos National Laboratory
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# 3. h5diff debug output:
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# Debug output all have prefix "h5diff debug: ".
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# 4. AIX system prints messages like these when it is aborting:
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# ERROR: 0031-300 Forcing all remote tasks to exit due to exit code 1 in task 0
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# ERROR: 0031-250 task 4: Terminated
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# ERROR: 0031-250 task 3: Terminated
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# ERROR: 0031-250 task 2: Terminated
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# ERROR: 0031-250 task 1: Terminated
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STDERR_FILTER() {
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result_file=$1
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tmp_file=/tmp/h5test_tmp_$$
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# Filter MPE messages
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if test -n "$pmode"; then
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cp $result_file $tmp_file
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sed -e '/^Writing logfile./d' -e '/^Finished writing logfile./d' \
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< $tmp_file > $result_file
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fi
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# Filter LANL MPI messages
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# and LLNL srun messages
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# and AIX error messages
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if test -n "$pmode"; then
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cp $result_file $tmp_file
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sed -e '/^LA-MPI:/d' -e '/^srun:/d' -e '/^ERROR:/d' \
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< $tmp_file > $result_file
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fi
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# Filter h5diff debug output
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cp $result_file $tmp_file
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sed -e '/^h5diff debug: /d' \
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< $tmp_file > $result_file
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# clean up temporary files.
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rm -f $tmp_file
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}
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# Source in the output filter function definitions.
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. $srcdir/../../bin/output_filter.sh
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# Run a test and print PASS or *FAIL*. If a test fails then increment
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# the `nerrors' global variable and (if $verbose is set) display the
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@ -59,6 +59,9 @@ TESTING() {
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echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Source in the output filter function definitions.
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. $srcdir/../../bin/output_filter.sh
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# Run a test and print PASS or *FAIL*. If a test fails then increment
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# the `nerrors' global variable and (if $verbose is set) display the
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# difference between the actual output and the expected output. The
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@ -71,6 +74,8 @@ TOOLTEST() {
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expect="$srcdir/../testfiles/$1"
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actual="../testfiles/`basename $1 .ddl`.out"
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actual_err="../testfiles/`basename $1 .ddl`.err"
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actual_sav=${actual}-sav
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actual_err_sav=${actual_err}-sav
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shift
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# Run test.
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@ -79,12 +84,18 @@ TOOLTEST() {
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echo "#############################"
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echo "Expected output for '$DUMPER $@'"
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echo "#############################"
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cd $srcdir/../testfiles
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$RUNSERIAL $DUMPER_BIN $@
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cd $srcdir/../testfiles
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$RUNSERIAL $DUMPER_BIN $@
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) >$actual 2>$actual_err
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# save actual and actual_err in case they are needed later.
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cp $actual $actual_sav
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STDOUT_FILTER $actual
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cp $actual_err $actual_err_sav
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STDERR_FILTER $actual_err
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cat $actual_err >> $actual
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if [ ! -f $expect ]; then
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if [ ! -f $expect ]; then
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# Create the expect file if it doesn't yet exist.
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echo " CREATED"
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cp $actual $expect
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@ -93,13 +104,13 @@ TOOLTEST() {
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else
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echo "*FAILED*"
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echo " Expected result (*.ddl) differs from actual result (*.out)"
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
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fi
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# Clean up output file
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if test -z "$HDF5_NOCLEANUP"; then
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rm -f $actual $actual_err
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rm -f $actual $actual_err $actual_sav $actual_err_sav
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fi
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}
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@ -112,18 +123,26 @@ TOOLTEST1() {
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expect="$srcdir/../testfiles/$1"
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actual="../testfiles/`basename $1 .ddl`.out"
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actual_err="../testfiles/`basename $1 .ddl`.err"
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actual_sav=${actual}-sav
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actual_err_sav=${actual_err}-sav
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shift
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# Run test.
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TESTING $DUMPER $@
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(
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cd $srcdir/../testfiles
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$RUNSERIAL $DUMPER_BIN $@
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cd $srcdir/../testfiles
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$RUNSERIAL $DUMPER_BIN $@
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) >$actual 2>$actual_err
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# save actual and actual_err in case they are needed later.
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cp $actual $actual_sav
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STDOUT_FILTER $actual
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cp $actual_err $actual_err_sav
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STDERR_FILTER $actual_err
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cat $actual_err >> $actual
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if [ ! -f $expect ]; then
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if [ ! -f $expect ]; then
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# Create the expect file if it doesn't yet exist.
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echo " CREATED"
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cp $actual $expect
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@ -132,13 +151,13 @@ TOOLTEST1() {
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else
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echo "*FAILED*"
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echo " Expected result (*.ddl) differs from actual result (*.out)"
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
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fi
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# Clean up output file
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if test -z "$HDF5_NOCLEANUP"; then
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rm -f $actual $actual_err
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rm -f $actual $actual_err $actual_sav $actual_err_sav $actual_ext
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fi
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}
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@ -203,6 +222,8 @@ TOOLTEST3() {
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actual="../testfiles/`basename $1 .ddl`.out"
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actual_err="../testfiles/`basename $1 .ddl`.err"
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actual_ext="../testfiles/`basename $1 .ddl`.ext"
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actual_sav=${actual}-sav
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actual_err_sav=${actual_err}-sav
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shift
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# Run test.
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@ -215,6 +236,12 @@ TOOLTEST3() {
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$RUNSERIAL $DUMPER_BIN $@
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) >$actual 2>$actual_err
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# save actual and actual_err in case they are needed later.
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cp $actual $actual_sav
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STDOUT_FILTER $actual
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cp $actual_err $actual_err_sav
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STDERR_FILTER $actual_err
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# Extract file name, line number, version and thread IDs because they may be different
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sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
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-e 's/line [0-9]*/line (number)/' \
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@ -240,15 +267,15 @@ TOOLTEST3() {
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# Clean up output file
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if test -z "$HDF5_NOCLEANUP"; then
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rm -f $actual $actual_err
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rm -f $actual $actual_err $actual_sav $actual_err_sav
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fi
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}
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# Print a "SKIP" message
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SKIP() {
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TESTING $DUMPER $@
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echo " -SKIP-"
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TESTING $DUMPER $@
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echo " -SKIP-"
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}
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# Print a line-line message left justified in a field of 70 characters
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@ -265,8 +292,8 @@ DIFFTEST()
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{
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PRINT_H5DIFF $@
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(
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cd $srcdir/../testfiles
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$RUNSERIAL $H5DIFF_BIN "$@" -q
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cd $srcdir/../testfiles
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$RUNSERIAL $H5DIFF_BIN "$@" -q
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)
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RET=$?
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if [ $RET != 0 ] ; then
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@ -298,8 +325,8 @@ IMPORTTEST()
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PRINT_H5IMPORT $@
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(
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cd $srcdir/../testfiles
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$RUNSERIAL $H5IMPORT_BIN "$@"
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cd $srcdir/../testfiles
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$RUNSERIAL $H5IMPORT_BIN "$@"
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)
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RET=$?
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if [ $RET != 0 ] ; then
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@ -314,7 +341,7 @@ IMPORTTEST()
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##############################################################################
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##############################################################################
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### T H E T E S T S ###
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### T H E T E S T S ###
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##############################################################################
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##############################################################################
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@ -433,7 +460,7 @@ TOOLTEST tchar1.ddl -r tchar.h5
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# test failure handling
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# Missing file name
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TOOLTEST tnofilename-with-packed-bits.ddl
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TOOLTEST tnofilename-with-packed-bits.ddl
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# rev. 2004
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|
||||
@ -52,6 +52,9 @@ TESTING() {
|
||||
echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
|
||||
}
|
||||
|
||||
# Source in the output filter function definitions.
|
||||
. $srcdir/../../bin/output_filter.sh
|
||||
|
||||
# Run a test and print PASS or *FAIL*. For now, if h5ls can complete
|
||||
# with exit status 0, consider it pass. If a test fails then increment
|
||||
# the `nerrors' global variable and (if $verbose is set) display up to $NLINS
|
||||
@ -64,6 +67,8 @@ TOOLTEST() {
|
||||
expect="$srcdir/../testfiles/$1"
|
||||
actual="../testfiles/`basename $1 .ls`.out"
|
||||
actual_err="../testfiles/`basename $1 .ls`.err"
|
||||
actual_sav=${actual}-sav
|
||||
actual_err_sav=${actual_err}-sav
|
||||
shift
|
||||
retvalexpect=$1
|
||||
shift
|
||||
@ -81,6 +86,11 @@ TOOLTEST() {
|
||||
) >$actual 2>$actual_err
|
||||
|
||||
exitcode=$?
|
||||
# save actual and actual_err in case they are needed later.
|
||||
cp $actual $actual_sav
|
||||
STDOUT_FILTER $actual
|
||||
cp $actual_err $actual_err_sav
|
||||
STDERR_FILTER $actual_err
|
||||
cat $actual_err >> $actual
|
||||
if [ $h5haveexitcode = 'yes' -a $exitcode -ne $retvalexpect ]; then
|
||||
echo "*FAILED*"
|
||||
@ -107,7 +117,7 @@ TOOLTEST() {
|
||||
|
||||
# Clean up output file
|
||||
if test -z "$HDF5_NOCLEANUP"; then
|
||||
rm -f $actual $actual_err
|
||||
rm -f $actual $actual_err $actual_sav $actual_err_sav
|
||||
fi
|
||||
}
|
||||
|
||||
|
||||
@ -51,6 +51,9 @@ TESTING()
|
||||
echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
|
||||
}
|
||||
|
||||
# Source in the output filter function definitions.
|
||||
. $srcdir/../../bin/output_filter.sh
|
||||
|
||||
# Print a line-line message left justified in a field of 70 characters
|
||||
# beginning with the word "Verifying".
|
||||
#
|
||||
@ -97,6 +100,7 @@ H5LSTEST()
|
||||
{
|
||||
expect="$INDIR/`basename $1 .h5`.ls"
|
||||
actual="$OUTDIR/`basename $1 .h5`.out"
|
||||
actual_sav=${actual}-sav
|
||||
|
||||
# Stderr is included in stdout so that the diff can detect
|
||||
# any unexpected output from that stream too.
|
||||
@ -108,6 +112,10 @@ H5LSTEST()
|
||||
$RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
|
||||
) 2>&1 |sed 's/Modified:.*/Modified: XXXX-XX-XX XX:XX:XX XXX/' >$actual
|
||||
|
||||
# save actual in case it is needed later.
|
||||
cp $actual $actual_sav
|
||||
STDOUT_FILTER $actual
|
||||
STDERR_FILTER $actual
|
||||
|
||||
if [ ! -f $expect ]; then
|
||||
# Create the expect file if it doesn't yet exist.
|
||||
@ -124,7 +132,7 @@ H5LSTEST()
|
||||
|
||||
# Clean up output file
|
||||
if test -z "$HDF5_NOCLEANUP"; then
|
||||
rm -f $actual $actual_err
|
||||
rm -f $actual $actual_sav
|
||||
fi
|
||||
}
|
||||
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user