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Re-write of Java JNI error handling

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This commit is contained in:
Jordan Henderson 2019-02-11 10:58:58 -06:00
parent 4300ca6234
commit cc6a61215e
56 changed files with 17976 additions and 15906 deletions
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26
java/src/jni/CMakeLists.txt
View File

@ -14,6 +14,19 @@ set (HDF5_JAVA_JNI_CSRCS
${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pACPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDAPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDCPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDXPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFAPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFCPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGAPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGCPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLAPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLCPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCpyPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pStrCPLImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5plImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5rImp.c
${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.c
@ -36,6 +49,19 @@ set (HDF5_JAVA_JNI_CHDRS
${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pACPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDAPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDCPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pDXPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFAPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pFCPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGAPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pGCPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLAPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pLCPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pOCpyPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5pStrCPLImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5plImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5rImp.h
${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.h

5
java/src/jni/Makefile.am
View File

@ -34,7 +34,10 @@ libhdf5_java_la_LDFLAGS = -avoid-version -shared -export-dynamic -version-info $
# Source files for the library
libhdf5_java_la_SOURCES=exceptionImp.c h5Constants.c nativeData.c h5util.c h5Imp.c \
h5aImp.c h5dImp.c h5eImp.c h5fImp.c h5gImp.c h5iImp.c h5lImp.c h5oImp.c \
h5pImp.c h5plImp.c h5rImp.c h5sImp.c h5tImp.c h5vlImp.c h5zImp.c
h5pImp.c h5pACPLImp.c h5pDAPLImp.c h5pDCPLImp.c h5pDXPLImp.c \
h5pFAPLImp.c h5pFCPLImp.c h5pGAPLImp.c h5pGCPLImp.c h5pLAPLImp.c h5pLCPLImp.c \
h5pOCPLImp.c h5pOCpyPLImp.c h5pStrCPLImp.c h5plImp.c h5rImp.c h5sImp.c h5tImp.c \
h5vlImp.c h5zImp.c
# HDF5 Java (JNI) library depends on HDF5 Library.
libhdf5_java_la_LIBADD=$(LIBHDF5)

208
java/src/jni/exceptionImp.c
View File

@ -33,21 +33,14 @@ extern "C" {
#include "h5jni.h"
#include "exceptionImp.h"
extern H5E_auto2_t efunc;
extern void *edata;
extern H5E_auto2_t efunc;
extern void *edata;
/*******************/
/* Local Variables */
/*******************/
/* These types are copied from H5Eprivate.h
* They should be moved to a public include file, and deleted from
* here.
*/
#define H5E_NSLOTS 32 /*number of slots in an error stack */
/*
* The list of error messages in the system is kept as an array of
* error_code/message pairs, one for major error numbers and another for
@ -73,29 +66,29 @@ typedef struct H5E_num_t {
/* Local Macros */
/********************/
#define THROWEXCEPTION(className,args) { \
jclass jc; \
jmethodID jm; \
jobject ex; \
jc = ENVPTR->FindClass(ENVPAR (className)); \
if (jc == NULL) { \
return JNI_FALSE; \
} \
jm = ENVPTR->GetMethodID(ENVPAR jc, "<init>", "(Ljava/lang/String;)V"); \
if (jm == NULL) { \
printf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \
return JNI_FALSE; \
} \
ex = ENVPTR->NewObjectA (ENVPAR jc, jm, (jvalue*)(args)); \
if (ex == NULL) { \
printf("THROWEXCEPTION FATAL ERROR: %s: Creation failed\n", (className)); \
return JNI_FALSE; \
} \
if (ENVPTR->Throw(ENVPAR (jthrowable)ex) < 0) { \
printf("THROWEXCEPTION FATAL ERROR: %s: Throw failed\n", (className)); \
return JNI_FALSE; \
} \
return JNI_TRUE; \
#define THROWEXCEPTION(className, args) \
{ \
jmethodID jm; \
jclass jc; \
jobject ex; \
\
if (NULL == (jc = ENVPTR->FindClass(ENVONLY, (className)))) \
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
\
if (NULL == (jm = ENVPTR->GetMethodID(ENVONLY, jc, "<init>", "(Ljava/lang/String;)V"))) { \
HDprintf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
} \
\
if (NULL == (ex = ENVPTR->NewObjectA(ENVONLY, jc, jm, (jvalue *)(args)))) { \
HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Creation failed\n", (className)); \
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
} \
\
if (ENVPTR->Throw(ENVONLY, (jthrowable)ex) < 0) { \
HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Throw failed\n", (className)); \
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \
} \
}
/********************/
@ -112,7 +105,9 @@ walk_error_callback
{
H5E_num_t *err_nums = (H5E_num_t *)_err_nums;
if(err_desc) {
UNUSED(n);
if (err_desc) {
err_nums->maj_num = err_desc->maj_num;
err_nums->min_num = err_desc->min_num;
} /* end if */
@ -130,8 +125,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5error_1off
(JNIEnv *env, jclass clss)
{
H5Eget_auto2(H5E_DEFAULT, &efunc, &edata);
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
UNUSED(env);
UNUSED(clss);
if (H5Eget_auto2(H5E_DEFAULT, &efunc, &edata) < 0)
return -1;
if (H5Eset_auto2(H5E_DEFAULT, NULL, NULL) < 0)
return -1;
return 0;
} /* end Java_hdf_hdf5lib_H5_H5error_1off() */
@ -145,10 +147,12 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5error_1on
(JNIEnv *env, jclass clss)
{
UNUSED(env);
UNUSED(clss);
H5Eset_auto2(H5E_DEFAULT, efunc, edata);
} /* end Java_hdf_hdf5lib_H5_H5error_1on() */
/*
* Class: hdf_hdf5lib_exceptions_HDFLibraryException
* Method: printStackTrace0
@ -163,18 +167,25 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0
FILE *stream = NULL;
const char *file = NULL;
if(file_name == NULL) {
UNUSED(obj);
if (NULL == file_name) {
H5Eprint2(H5E_DEFAULT, stderr);
} /* end if */
}
else {
file = ENVPTR->GetStringUTFChars(ENVPAR file_name, 0);
stream = HDfopen(file, "a+");
if(stream) {
PIN_JAVA_STRING(ENVONLY, file_name, file, NULL, "printStackTrace0: file name not pinned");
if ((stream = HDfopen(file, "a+"))) {
H5Eprint2(H5E_DEFAULT, stream);
HDfclose(stream);
} /* end if */
ENVPTR->ReleaseStringUTFChars(ENVPAR file_name, file);
} /* end else */
}
}
done:
if (file)
UNPIN_JAVA_STRING(ENVONLY, file_name, file);
return;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0() */
/*
@ -189,10 +200,15 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber
(JNIEnv *env, jobject obj)
{
H5E_num_t err_nums;
UNUSED(env);
UNUSED(obj);
err_nums.maj_num = 0;
err_nums.min_num = 0;
H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums);
if (H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums) < 0)
return -1;
return err_nums.maj_num;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber() */
@ -209,27 +225,42 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber
(JNIEnv *env, jobject obj)
{
H5E_num_t err_nums;
UNUSED(env);
UNUSED(obj);
err_nums.maj_num = 0;
err_nums.min_num = 0;
H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums);
if (H5Ewalk2(H5E_DEFAULT, H5E_WALK_DOWNWARD, walk_error_callback, &err_nums) < 0)
return -1;
return err_nums.min_num;
} /* end Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber() */
/*
* Routine to raise particular Java exceptions from C
* Routine to raise particular Java exceptions from C.
*/
static jboolean
H5JNIErrorClass
(JNIEnv *env, const char *message, const char *className)
{
char *args[2];
jstring str = ENVPTR->NewStringUTF(ENVPAR message);
args[0] = (char *)str;
jstring str;
char *args[2];
jboolean retVal = JNI_FALSE;
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, message)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
args[0] = (char *) str;
args[1] = 0;
THROWEXCEPTION(className, args);
retVal = JNI_TRUE;
done:
return retVal;
} /* end H5JNIErrorClass() */
/*
@ -316,7 +347,7 @@ h5unimplemented
*/
jboolean
h5raiseException
(JNIEnv *env, const char *exception, const char *message)
(JNIEnv *env, const char *message, const char *exception)
{
return H5JNIErrorClass(env, message, exception);
} /* end h5raiseException() */
@ -336,51 +367,76 @@ jboolean
h5libraryError
(JNIEnv *env)
{
char *args[2];
const char *exception = NULL;
char *msg_str = NULL;
int num_errs = 0;
H5E_type_t error_msg_type;
H5E_num_t exceptionNumbers;
jstring str = NULL;
ssize_t msg_size = 0;
hid_t min_num;
hid_t maj_num;
ssize_t msg_size = 0;
H5E_type_t error_msg_type;
jstring str = NULL;
hid_t stk_id = -1;
H5E_num_t exceptionNumbers;
hid_t stk_id = H5I_INVALID_HID;
char *args[2];
char *msg_str = NULL;
jboolean retVal = JNI_FALSE;
exceptionNumbers.maj_num = 0;
exceptionNumbers.min_num = 0;
/* Save current stack contents for future use */
stk_id = H5Eget_current_stack(); /* This will clear current stack */
if(stk_id >= 0)
H5Ewalk2(stk_id, H5E_WALK_DOWNWARD, walk_error_callback, &exceptionNumbers);
if ((stk_id = H5Eget_current_stack()) >= 0)
/* This will clear current stack */
if (H5Ewalk2(stk_id, H5E_WALK_DOWNWARD, walk_error_callback, &exceptionNumbers) < 0)
goto done;
maj_num = exceptionNumbers.maj_num;
min_num = exceptionNumbers.min_num;
/*
* TODO: handle < 0 case.
*/
/*
* No error detected in HDF5 error stack.
*/
if (!maj_num && !min_num)
goto done;
exception = defineHDF5LibraryException(maj_num);
/* get the length of the name */
msg_size = H5Eget_msg(min_num, NULL, NULL, 0);
if(msg_size > 0) {
msg_size++; /* add extra space for the null terminator */
msg_str = (char*)HDcalloc((size_t)msg_size, sizeof(char));
if(msg_str) {
msg_size = H5Eget_msg(min_num, &error_msg_type, (char *)msg_str, (size_t)msg_size);
str = ENVPTR->NewStringUTF(ENVPAR msg_str);
HDfree(msg_str);
} /* end if */
} /* end if */
if ((msg_size = H5Eget_msg(min_num, NULL, NULL, 0)) < 0)
goto done;
if (msg_size > 0) {
if (NULL == (msg_str = (char *) HDcalloc((size_t)msg_size + 1, sizeof(char))))
H5_JNI_FATAL_ERROR(ENVONLY, "h5libraryerror: failed to allocate buffer for error message");
if ((msg_size = H5Eget_msg(min_num, &error_msg_type, msg_str, (size_t)msg_size + 1)) < 0)
goto done;
msg_str[msg_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, msg_str)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
else
str = NULL;
if(stk_id >= 0)
if (stk_id >= 0)
H5Eset_current_stack(stk_id);
args[0] = (char *)str;
args[0] = (char *) str;
args[1] = 0;
THROWEXCEPTION(exception, args);
} /* end h5libraryError() */
THROWEXCEPTION(exception, args);
retVal = JNI_TRUE;
done:
if (msg_str)
HDfree(msg_str);
return retVal;
} /* end h5libraryError() */
/*
* defineHDF5LibraryException() returns the name of the sub-class

2
java/src/jni/h5Constants.c
View File

@ -1260,7 +1260,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1THREADSAFE(JNIEnv *env, jclass c
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE(JNIEnv *env, jclass cls) { return H5VL_NATIVE; }
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) { return (jstring)ENVPTR->NewStringUTF(ENVPAR H5VL_NATIVE_NAME); }
Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) { return (jstring)ENVPTR->NewStringUTF(ENVONLY, H5VL_NATIVE_NAME); }
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VALUE(JNIEnv *env, jclass cls) { return H5VL_NATIVE_VALUE; }
JNIEXPORT jint JNICALL

106
java/src/jni/h5Imp.c
View File

@ -35,7 +35,10 @@ extern "C" {
#include "h5jni.h"
#include "h5Imp.h"
extern JavaVM *jvm;
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@ -46,10 +49,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5open
(JNIEnv *env, jclass clss)
{
herr_t retVal = H5open();
if (retVal < 0)
h5libraryError(env);
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5open()) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5open */
@ -62,10 +69,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5close
(JNIEnv *env, jclass clss)
{
herr_t retVal = H5close();
if (retVal < 0)
h5libraryError(env);
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5close()) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5close */
@ -78,10 +89,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5dont_1atexit
(JNIEnv *env, jclass clss)
{
herr_t retVal = H5dont_atexit();
if (retVal < 0)
h5libraryError(env);
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5dont_atexit()) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5dont_1atexit */
@ -94,29 +109,25 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5get_1libversion
(JNIEnv *env, jclass clss, jintArray libversion)
{
unsigned *theArray = NULL;
herr_t status = -1;
jboolean isCopy;
jboolean libversionArrayIsCopy;
int *libversionArray = NULL;
herr_t status = FAIL;
if (libversion == NULL) {
h5nullArgument(env, "H5get_version: libversion is NULL");
} /* end if */
else {
theArray = (unsigned*)ENVPTR->GetIntArrayElements(ENVPAR libversion, &isCopy);
if (theArray == NULL) {
h5JNIFatalError( env, "H5get_libversion: input not pinned");
} /* end if */
else {
status = H5get_libversion(&(theArray[0]), &(theArray[1]), &(theArray[2]));
UNUSED(clss);
if (status < 0) {
ENVPTR->ReleaseIntArrayElements(ENVPAR libversion, (jint*)theArray, JNI_ABORT);
h5libraryError(env);
} /* end if */
ENVPTR->ReleaseIntArrayElements(ENVPAR libversion, (jint*)theArray,0);
} /* end else */
} /* end else */
return (jint)status;
if (libversion == NULL)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5get_libversion: libversion is NULL");
PIN_INT_ARRAY(ENVONLY, libversion, libversionArray, &libversionArrayIsCopy, "H5get_libversion: libversion input not pinned");
if ((status = H5get_libversion((unsigned *) &(libversionArray[0]), (unsigned *) &(libversionArray[1]), (unsigned *) &(libversionArray[2]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (libversionArray)
UNPIN_INT_ARRAY(ENVONLY, libversion, libversionArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5get_1libversion */
/*
@ -128,6 +139,9 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5check_1version
(JNIEnv *env, jclass clss, jint majnum, jint minnum, jint relnum)
{
UNUSED(env);
UNUSED(clss);
return (jint)H5check_version((unsigned)majnum, (unsigned)minnum, (unsigned)relnum);
} /* end Java_hdf_hdf5lib_H5_H5check_1version */
@ -141,10 +155,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5garbage_1collect
(JNIEnv *env, jclass clss)
{
herr_t retVal = H5garbage_collect();
if (retVal < 0)
h5libraryError(env);
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5garbage_collect()) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5garbage_1collect */
@ -158,11 +176,15 @@ Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits
(JNIEnv *env, jclass clss, jint reg_global_lim, jint reg_list_lim,
jint arr_global_lim, jint arr_list_lim, jint blk_global_lim, jint blk_list_lim )
{
herr_t retVal = H5set_free_list_limits((int)reg_global_lim, (int)reg_list_lim,
(int)arr_global_lim, (int)arr_list_lim, (int)blk_global_lim, (int)blk_list_lim);
if (retVal < 0)
h5libraryError(env);
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5set_free_list_limits((int)reg_global_lim, (int)reg_list_lim,
(int)arr_global_lim, (int)arr_list_lim, (int)blk_global_lim, (int)blk_list_lim)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits */
@ -176,7 +198,13 @@ Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe
(JNIEnv *env, jclass clss)
{
hbool_t is_ts = false;
H5is_library_threadsafe(&is_ts);
UNUSED(clss);
if (H5is_library_threadsafe(&is_ts) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jboolean)is_ts;
} /* end Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe */

2664
java/src/jni/h5aImp.c
View File

File diff suppressed because it is too large Load Diff

2560
java/src/jni/h5dImp.c
View File

File diff suppressed because it is too large Load Diff

561
java/src/jni/h5eImp.c
View File

@ -39,6 +39,9 @@ extern "C" {
#include "h5jni.h"
#include "h5eImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
extern JavaVM *jvm;
typedef struct _cb_wrapper {
@ -46,20 +49,6 @@ typedef struct _cb_wrapper {
jobject op_data;
} cb_wrapper;
#ifdef __cplusplus
#define CBENVPTR (cbenv)
#define CBENVPAR
#define JVMPTR (jvm)
#define JVMPAR
#define JVMPAR2
#else /* __cplusplus */
#define CBENVPTR (*cbenv)
#define CBENVPAR cbenv,
#define JVMPTR (*jvm)
#define JVMPAR jvm
#define JVMPAR2 jvm,
#endif /* __cplusplus */
/********************/
/* Local Prototypes */
/********************/
@ -77,12 +66,15 @@ Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2
{
unsigned int is_stack = 0;
if (stk_id < 0) {
h5badArgument(env, "H5Eauto_is_v2: invalid argument");
} /* end if */
else if (H5Eauto_is_v2((hid_t)stk_id, &is_stack) < 0)
h5libraryError(env);
UNUSED(cls);
if (stk_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eauto_is_v2: invalid stack ID");
if (H5Eauto_is_v2((hid_t)stk_id, &is_stack) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jboolean)is_stack;
} /* end Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2 */
@ -95,20 +87,27 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Eregister_1class
(JNIEnv *env, jclass cls, jstring cls_name, jstring lib_name, jstring version)
{
hid_t ret_val = -1;
const char* the_cls_name;
const char* the_lib_name;
const char* the_version;
const char* the_cls_name = NULL;
const char* the_lib_name = NULL;
const char* the_version = NULL;
hid_t ret_val = H5I_INVALID_HID;
PIN_JAVA_STRING_THREE(cls_name, the_cls_name, lib_name, the_lib_name, version, the_version);
if (the_cls_name != NULL && the_lib_name != NULL && the_version != NULL) {
ret_val = H5Eregister_class(the_cls_name, the_lib_name, the_version);
UNUSED(cls);
UNPIN_JAVA_STRING_THREE(cls_name, the_cls_name, lib_name, the_lib_name, version, the_version);
PIN_JAVA_STRING(ENVONLY, cls_name, the_cls_name, NULL, "H5Eregister_class: class name not pinned");
PIN_JAVA_STRING(ENVONLY, lib_name, the_lib_name, NULL, "H5Eregister_class: lib name not pinned");
PIN_JAVA_STRING(ENVONLY, version, the_version, NULL, "H5Eregister_class: version string not pinned");
if (ret_val < 0)
h5libraryError(env);
}
if ((ret_val = H5Eregister_class(the_cls_name, the_lib_name, the_version)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (the_version)
UNPIN_JAVA_STRING(ENVONLY, version, the_version);
if (the_lib_name)
UNPIN_JAVA_STRING(ENVONLY, lib_name, the_lib_name);
if (the_cls_name)
UNPIN_JAVA_STRING(ENVONLY, cls_name, the_cls_name);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eregister_1class */
@ -122,11 +121,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eunregister_1class
(JNIEnv *env, jclass cls, jlong cls_id)
{
if (cls_id < 0) {
h5badArgument(env, "H5Eunregister_class: invalid argument");
} /* end if */
else if (H5Eunregister_class((hid_t)cls_id) < 0)
h5libraryError(env);
UNUSED(cls);
if (cls_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eunregister_class: invalid error class ID");
if (H5Eunregister_class((hid_t)cls_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Eunregister_1class */
/*
@ -138,11 +142,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclose_1msg
(JNIEnv *env, jclass cls, jlong err_id)
{
if (err_id < 0) {
h5badArgument(env, "H5Eclose_msg: invalid argument");
} /* end if */
else if (H5Eclose_msg((hid_t)err_id) < 0)
h5libraryError(env);
UNUSED(cls);
if (err_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclose_msg: invalid error message ID");
if (H5Eclose_msg((hid_t)err_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Eclose_1msg */
/*
@ -154,24 +163,23 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Ecreate_1msg
(JNIEnv *env, jclass cls, jlong err_id, jint msg_type, jstring err_msg)
{
hid_t ret_val = -1;
const char *the_err_msg;
H5E_type_t error_msg_type = (H5E_type_t)msg_type;
const char *the_err_msg = NULL;
hid_t ret_val = H5I_INVALID_HID;
if (err_id < 0) {
h5badArgument(env, "H5Ecreate_msg: invalid argument");
} /* end if */
else {
PIN_JAVA_STRING(err_msg, the_err_msg);
if (the_err_msg != NULL) {
ret_val = H5Ecreate_msg((hid_t)err_id, error_msg_type, the_err_msg);
UNUSED(cls);
UNPIN_JAVA_STRING(err_msg, the_err_msg);
if (err_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ecreate_msg: invalid error class ID");
if (ret_val < 0)
h5libraryError(env);
}
} /* end else */
PIN_JAVA_STRING(ENVONLY, err_msg, the_err_msg, NULL, "H5Ecreate_msg: error message string not pinned");
if ((ret_val = H5Ecreate_msg((hid_t)err_id, error_msg_type, the_err_msg)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (the_err_msg)
UNPIN_JAVA_STRING(ENVONLY, err_msg, the_err_msg);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Ecreate_1msg */
@ -185,12 +193,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Ecreate_1stack
(JNIEnv *env, jclass cls)
{
hid_t ret_val = -1;
hid_t ret_val = H5I_INVALID_HID;
ret_val = H5Ecreate_stack();
if (ret_val < 0)
h5libraryError(env);
UNUSED(cls);
if ((ret_val = H5Ecreate_stack()) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Ecreate_1stack */
@ -203,12 +213,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1current_1stack
(JNIEnv *env, jclass cls)
{
hid_t ret_val = -1;
hid_t ret_val = H5I_INVALID_HID;
ret_val = H5Eget_current_stack();
if (ret_val < 0)
h5libraryError(env);
UNUSED(cls);
if ((ret_val = H5Eget_current_stack()) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1current_1stack */
@ -221,11 +233,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclose_1stack
(JNIEnv *env, jclass cls, jlong stk_id)
{
if (stk_id < 0) {
h5badArgument(env, "H5Eclose_stack: invalid argument");
} /* end if */
else if (H5Eclose_stack((hid_t)stk_id) < 0)
h5libraryError(env);
UNUSED(cls);
if (stk_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclose_stack: invalid error stack ID");
if (H5Eclose_stack((hid_t)stk_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Eclose_1stack */
/*
@ -237,20 +254,24 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eprint2
(JNIEnv *env, jclass cls, jlong stk_id, jobject stream_obj)
{
herr_t ret_val = -1;
herr_t ret_val = FAIL;
if (stk_id < 0) {
h5badArgument(env, "H5Eprint2: invalid argument");
} /* end if */
UNUSED(cls);
if (stk_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eprint2: invalid error stack ID");
if (!stream_obj) {
if ((ret_val = H5Eprint2((hid_t)stk_id, stdout)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
}
else {
if(!stream_obj)
ret_val = H5Eprint2((hid_t)stk_id, stdout);
else
ret_val = H5Eprint2((hid_t)stk_id, (FILE*)stream_obj);
if ((ret_val = H5Eprint2((hid_t)stk_id, (FILE *)stream_obj)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
}
if (ret_val < 0)
h5libraryError(env);
} /* end else */
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Eprint2 */
/*
@ -262,43 +283,36 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1class_1name
(JNIEnv *env, jclass cls, jlong cls_id)
{
char *namePtr;
jstring str = NULL;
ssize_t buf_size;
jstring str = NULL;
ssize_t buf_size;
char *namePtr = NULL;
if (cls_id < 0) {
h5badArgument(env, "H5Eget_class_name: invalid argument");
} /* end if */
else {
/* get the length of the name */
buf_size = H5Eget_class_name((hid_t)cls_id, NULL, 0);
UNUSED(cls);
if (buf_size < 0) {
h5badArgument( env, "H5Eget_class_name: buf_size < 0");
} /* end if */
else if (buf_size == 0) {
h5badArgument( env, "H5Eget_class_name: No class name");
} /* end else if */
else {
buf_size++; /* add extra space for the null terminator */
namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
if (namePtr == NULL) {
h5outOfMemory( env, "H5Eget_class_name: malloc failed");
} /* end if */
else {
buf_size = H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size);
if (cls_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: invalid error class ID");
/* Get the length of the name */
if ((buf_size = H5Eget_class_name((hid_t)cls_id, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (!buf_size)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: no class name");
if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_class_name: malloc failed");
if ((H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size + 1)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
namePtr[buf_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (namePtr)
HDfree(namePtr);
if (buf_size < 0) {
HDfree(namePtr);
h5libraryError(env);
} /* end if */
else {
str = ENVPTR->NewStringUTF(ENVPAR namePtr);
HDfree(namePtr);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1class_1name */
@ -311,11 +325,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eset_1current_1stack
(JNIEnv *env, jclass cls, jlong stk_id)
{
if (stk_id < 0) {
h5badArgument(env, "H5Eset_current_stack: invalid argument");
} /* end if */
else if (H5Eset_current_stack((hid_t)stk_id) < 0)
h5libraryError(env);
UNUSED(cls);
if (stk_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eset_current_stack: invalid error stack ID");
if (H5Eset_current_stack((hid_t)stk_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Eset_1current_1stack */
/*
@ -327,11 +346,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Epop
(JNIEnv *env, jclass cls, jlong stk_id, jlong count)
{
if (stk_id < 0) {
h5badArgument(env, "H5Epop: invalid argument");
} /* end if */
else if (H5Epop((hid_t)stk_id, (size_t)count) < 0)
h5libraryError(env);
UNUSED(cls);
if (stk_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epop: invalid error stack ID");
if (H5Epop((hid_t)stk_id, (size_t)count) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Epop */
/*
@ -344,35 +368,37 @@ Java_hdf_hdf5lib_H5_H5Epush2
(JNIEnv *env, jclass cls, jlong stk_id, jstring filename, jstring funcname,
jint linenumber, jlong class_id, jlong major_id, jlong minor_id, jstring err_desc)
{
herr_t ret_val = -1;
const char* fName;
const char* fncName;
const char* errMsg;
const char *fName = NULL;
const char *fncName = NULL;
const char *errMsg = NULL;
herr_t ret_val = FAIL;
if (stk_id < 0) {
h5badArgument(env, "H5Epush: invalid argument");
} /* end if */
else if (class_id < 0) {
h5badArgument(env, "H5Epush: invalid class_id argument");
} /* end else if */
else if (major_id < 0) {
h5badArgument(env, "H5Epush: invalid major_id argument");
} /* end else if */
else if (minor_id < 0) {
h5badArgument(env, "H5Epush: invalid minor_id argument");
} /* end else if */
else {
PIN_JAVA_STRING_THREE(filename, fName, funcname, fncName, err_desc, errMsg);
if (fName != NULL && fncName != NULL && errMsg != NULL) {
ret_val = H5Epush2((hid_t)stk_id, fName, fncName, (unsigned)linenumber, (hid_t)class_id,
(hid_t)major_id, (hid_t)minor_id, errMsg);
UNUSED(cls);
UNPIN_JAVA_STRING_THREE(filename, fName, funcname, fncName, err_desc, errMsg);
if (stk_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush: invalid error stack ID");
if (class_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush: invalid error class ID");
if (major_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush: invalid major error class ID");
if (minor_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Epush: invalid minor error class ID");
if (ret_val < 0)
h5libraryError(env);
}
} /* end else */
PIN_JAVA_STRING(ENVONLY, filename, fName, NULL, "H5Epush2: filename not pinned");
PIN_JAVA_STRING(ENVONLY, funcname, fncName, NULL, "H5Epush2: function name not pinned");
PIN_JAVA_STRING(ENVONLY, err_desc, errMsg, NULL, "H5Epush2: error message not pinned");
if ((ret_val = H5Epush2((hid_t)stk_id, fName, fncName, (unsigned)linenumber, (hid_t)class_id,
(hid_t)major_id, (hid_t)minor_id, errMsg)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (errMsg)
UNPIN_JAVA_STRING(ENVONLY, err_desc, errMsg);
if (fncName)
UNPIN_JAVA_STRING(ENVONLY, funcname, fncName);
if (fName)
UNPIN_JAVA_STRING(ENVONLY, filename, fName);
} /* end Java_hdf_hdf5lib_H5_H5Epush2 */
/*
@ -384,11 +410,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Eclear2
(JNIEnv *env, jclass cls, jlong stk_id)
{
if (stk_id < 0) {
h5badArgument(env, "H5Eclear2: invalid argument");
} /* end if */
else if (H5Eclear2((hid_t)stk_id) < 0)
h5libraryError(env);
UNUSED(cls);
if (stk_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eclear2: invalid error stack ID");
if (H5Eclear2((hid_t)stk_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Eclear2 */
/*
@ -400,57 +431,45 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Eget_1msg
(JNIEnv *env, jclass cls, jlong msg_id, jintArray error_msg_type_list)
{
char *namePtr;
jstring str = NULL;
jboolean isCopy;
ssize_t buf_size;
jint *theArray;
H5E_type_t error_msg_type;
H5E_type_t error_msg_type;
jstring str = NULL;
ssize_t buf_size;
jint *theArray = NULL;
char *namePtr = NULL;
if (msg_id < 0) {
h5badArgument(env, "H5Eget_msg: invalid argument");
} /* end if */
else if (error_msg_type_list == NULL) {
h5nullArgument(env, "H5Eget_msg: error_msg_type_list is NULL");
} /* end if */
else {
/* get the length of the name */
buf_size = H5Eget_msg((hid_t)msg_id, NULL, NULL, 0);
UNUSED(cls);
if ((buf_size < 0) || (buf_size == 0)) {
h5JNIFatalError(env, "H5Eget_msg: Invalid message");
} /* end if */
else {
buf_size++; /* add extra space for the null terminator */
namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
if (namePtr == NULL) {
h5outOfMemory(env, "H5Eget_msg: malloc failed");
} /* end if */
else {
theArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR error_msg_type_list, &isCopy);
if (theArray == NULL) {
HDfree(namePtr);
h5JNIFatalError(env, "H5Eget_msg: error_msg_type_list not pinned");
} /* end if */
else {
buf_size = H5Eget_msg((hid_t)msg_id, &error_msg_type, (char *)namePtr, (size_t)buf_size);
if (msg_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: invalid error message ID");
if (NULL == error_msg_type_list)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: error_msg_type_list is NULL");
if (buf_size < 0) {
HDfree(namePtr);
ENVPTR->ReleaseIntArrayElements(ENVPAR error_msg_type_list, theArray, JNI_ABORT);
h5libraryError(env);
} /* end if */
else {
theArray[0] = error_msg_type;
ENVPTR->ReleaseIntArrayElements(ENVPAR error_msg_type_list, theArray, 0);
/* Get the length of the name */
if ((buf_size = H5Eget_msg((hid_t)msg_id, NULL, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
str = ENVPTR->NewStringUTF(ENVPAR namePtr);
HDfree(namePtr);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
} /* end else */
if (!buf_size)
H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: invalid message");
if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: malloc failed");
PIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, NULL, "H5Eget_msg: error_msg_type_list not pinned");
if ((H5Eget_msg((hid_t)msg_id, &error_msg_type, (char *)namePtr, (size_t)buf_size + 1)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
namePtr[buf_size] = '\0';
theArray[0] = error_msg_type;
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, 0);
if (namePtr)
HDfree(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1msg */
@ -466,14 +485,15 @@ Java_hdf_hdf5lib_H5_H5Eget_1num
{
ssize_t ret_val = -1;
if (stk_id < 0) {
h5badArgument(env, "H5Eget_num: invalid argument");
} /* end if */
else {
ret_val = H5Eget_num((hid_t)stk_id);
if (ret_val < 0)
h5libraryError(env);
} /* end else */
UNUSED(cls);
if (stk_id < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_num: invalid error stack ID");
if ((ret_val = H5Eget_num((hid_t)stk_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Eget_1num */
@ -481,52 +501,67 @@ static herr_t
H5E_walk_cb
(int nindx, const H5E_error2_t *info, void *cb_data)
{
JNIEnv *cbenv;
jint status = -1;
jclass cls;
jmethodID mid;
jstring str1, str2, str3;
jmethodID constructor;
jvalue args[7];
jobject cb_info_t = NULL;
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
void *op_data = (void *)wrapper->op_data;
jobject visit_callback = wrapper->visit_callback;
jmethodID constructor;
jmethodID mid;
jobject visit_callback = wrapper->visit_callback;
jstring str1, str2, str3;
jobject cb_info_t = NULL;
jvalue args[7];
JNIEnv *cbenv = NULL;
jclass cls;
void *op_data = (void *)wrapper->op_data;
jint status = FAIL;
if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(CBENVONLY, "H5E_walk_cb: failed to attach current thread to JVM");
}
if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(ILhdf/hdf5lib/structs/H5E_error2_t;Lhdf/hdf5lib/callbacks/H5E_walk_t;)I")))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
args[0].j = info->cls_id;
args[1].j = info->maj_num;
args[2].j = info->min_num;
args[3].i = (jint)info->line;
if (NULL == (str1 = CBENVPTR->NewStringUTF(CBENVONLY, info->func_name)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
args[4].l = str1;
if (NULL == (str2 = CBENVPTR->NewStringUTF(CBENVONLY, info->file_name)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
args[5].l = str2;
if (NULL == (str3 = CBENVPTR->NewStringUTF(CBENVONLY, info->desc)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
args[6].l = str3;
/* Get a reference to your class if you don't have it already */
if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5E_error2_t")))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
/* get a reference to the constructor; the name is <init> */
if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V")))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, nindx, cb_info_t, op_data);
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
done:
if (CBENVONLY)
JVMPTR->DetachCurrentThread(JVMPAR);
if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) {
cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
if (cls != 0) {
mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(ILhdf/hdf5lib/structs/H5E_error2_t;Lhdf/hdf5lib/callbacks/H5E_walk_t;)I");
if (mid != 0) {
args[0].j = info->cls_id;
args[1].j = info->maj_num;
args[2].j = info->min_num;
args[3].i = (jint)info->line;
str1 = CBENVPTR->NewStringUTF(CBENVPAR info->func_name);
args[4].l = str1;
str2 = CBENVPTR->NewStringUTF(CBENVPAR info->file_name);
args[5].l = str2;
str3 = CBENVPTR->NewStringUTF(CBENVPAR info->desc);
args[6].l = str3;
// get a reference to your class if you don't have it already
cls = CBENVPTR->FindClass(CBENVPAR "hdf/hdf5lib/structs/H5E_error2_t");
if (cls != 0) {
// get a reference to the constructor; the name is <init>
constructor = CBENVPTR->GetMethodID(CBENVPAR cls, "<init>", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V");
if (constructor != 0) {
cb_info_t = CBENVPTR->NewObjectA(CBENVPAR cls, constructor, args);
if (cb_info_t == NULL) {
printf("FATAL ERROR: hdf/hdf5lib/structs/H5E_error2_t: Creation failed\n");
}
else {
status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, nindx, cb_info_t, op_data);
}
} /* end if (constructor != 0) */
} /* end if(cls != 0) */
} /* end if (mid != 0) */
} /* end if (cls != 0) */
} /* end if */
JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
} /* end H5E_walk_cb */
@ -539,15 +574,23 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Ewalk2
(JNIEnv *env, jclass cls, jlong stk_id, jlong direction, jobject callback_op, jobject op_data)
{
cb_wrapper wrapper = {callback_op, op_data};
cb_wrapper wrapper = { callback_op, op_data };
ENVPTR->GetJavaVM(ENVPAR &jvm);
UNUSED(cls);
if ((op_data == NULL) || (callback_op == NULL)) {
h5nullArgument(env, "H5Ewalk2: op_data or callback_op is NULL");
} /* end if */
else if (H5Ewalk2(stk_id, (H5E_direction_t)direction, (H5E_walk2_t)H5E_walk_cb, (void*)&wrapper) < 0)
h5libraryError(env);
ENVPTR->GetJavaVM(ENVONLY, &jvm);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == op_data)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ewalk2: op_data is NULL");
if (NULL == callback_op)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ewalk2: callback_op is NULL");
if (H5Ewalk2(stk_id, (H5E_direction_t)direction, (H5E_walk2_t)H5E_walk_cb, (void *)&wrapper) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end iJava_hdf_hdf5lib_H5_H5Ewalk2f */
#ifdef __cplusplus

579
java/src/jni/h5fImp.c
View File

@ -28,7 +28,10 @@ extern "C" {
#include "h5fImp.h"
#include "h5util.h"
extern JavaVM *jvm;
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@ -39,18 +42,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fopen
(JNIEnv *env, jclass clss, jstring name, jint flags, jlong access_id)
{
hid_t status = -1;
const char *fileName;
const char *fileName = NULL;
hid_t status = H5I_INVALID_HID;
PIN_JAVA_STRING(name, fileName);
if (fileName != NULL) {
status = H5Fopen(fileName, (unsigned)flags, (hid_t)access_id );
UNUSED(clss);
UNPIN_JAVA_STRING(name, fileName);
PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fopen: file name not pinned");
if (status < 0)
h5libraryError(env);
}
if ((status = H5Fopen(fileName, (unsigned)flags, (hid_t)access_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (fileName)
UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fopen */
@ -64,18 +68,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fcreate
(JNIEnv *env, jclass clss, jstring name, jint flags, jlong create_id, jlong access_id)
{
hid_t status = -1;
const char *fileName;
const char *fileName = NULL;
hid_t status = H5I_INVALID_HID;
PIN_JAVA_STRING(name, fileName);
if (fileName != NULL) {
status = H5Fcreate(fileName, (unsigned)flags, create_id, access_id);
UNUSED(clss);
UNPIN_JAVA_STRING(name, fileName);
PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fcreate: file name not pinned");
if (status < 0)
h5libraryError(env);
}
if ((status = H5Fcreate(fileName, (unsigned)flags, create_id, access_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (fileName)
UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fcreate */
@ -89,12 +94,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fflush
(JNIEnv *env, jclass clss, jlong object_id, jint scope)
{
herr_t retVal = -1;
herr_t retVal = FAIL;
retVal = H5Fflush((hid_t)object_id, (H5F_scope_t)scope );
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Fflush((hid_t)object_id, (H5F_scope_t)scope)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Fflush */
@ -107,34 +114,29 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1name
(JNIEnv *env, jclass cls, jlong file_id)
{
char *namePtr;
jstring str = NULL;
ssize_t buf_size;
jstring str = NULL;
ssize_t buf_size;
char *namePtr = NULL;
/* get the length of the name */
buf_size = H5Fget_name((hid_t)file_id, NULL, 0);
UNUSED(cls);
if (buf_size <= 0) {
h5badArgument(env, "H5Fget_name: buf_size <= 0");
} /* end if */
else {
buf_size++; /* add extra space for the null terminator */
namePtr = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
if (namePtr == NULL) {
h5outOfMemory(env, "H5Fget_name: malloc failed");
} /* end if */
else {
buf_size = H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size);
if (buf_size < 0) {
HDfree(namePtr);
h5libraryError(env);
} /* end if */
else {
str = ENVPTR->NewStringUTF(ENVPAR namePtr);
HDfree(namePtr);
}/* end else */
}/* end else */
}/* end else */
/* Get the length of the name */
if ((buf_size = H5Fget_name((hid_t)file_id, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_name: malloc failed");
if ((H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size + 1)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
namePtr[buf_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (namePtr)
HDfree(namePtr);
return str;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1name */
@ -148,24 +150,26 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fis_1hdf5
(JNIEnv *env, jclass clss, jstring name)
{
const char *fileName = NULL;
htri_t bval = JNI_FALSE;
UNUSED(clss);
#ifdef H5_NO_DEPRECATED_SYMBOLS
h5unimplemented(env, "H5Fis_hdf5: not implemented");
#else
const char *fileName;
PIN_JAVA_STRING(name, fileName);
if (fileName != NULL) {
bval = H5Fis_hdf5(fileName);
UNPIN_JAVA_STRING(name, fileName);
if (bval > 0)
bval = JNI_TRUE;
else if (bval < 0)
h5libraryError(env);
}
H5_UNIMPLEMENTED(ENVONLY, "H5Fis_hdf5: not implemented");
#endif
PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fis_hdf5: file name not pinned");
if ((bval = H5Fis_hdf5(fileName)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
done:
if (fileName)
UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Fis_1hdf5 */
@ -178,20 +182,21 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fis_1accessible
(JNIEnv *env, jclass clss, jstring name, jlong file_id)
{
const char *fileName = NULL;
htri_t bval = JNI_FALSE;
const char *fileName;
PIN_JAVA_STRING(name, fileName);
if (fileName != NULL) {
bval = H5Fis_accessible(fileName, (hid_t)file_id);
UNUSED(clss);
UNPIN_JAVA_STRING(name, fileName);
PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fis_accessible: file name not pinned");
if (bval > 0)
bval = JNI_TRUE;
else if (bval < 0)
h5libraryError(env);
}
if ((bval = H5Fis_accessible(fileName, (hid_t)file_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
done:
if (fileName)
UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Fis_1accessible */
@ -205,12 +210,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist
(JNIEnv *env, jclass clss, jlong file_id)
{
hid_t retVal = -1;
hid_t retVal = H5I_INVALID_HID;
retVal = H5Fget_create_plist((hid_t)file_id);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Fget_create_plist((hid_t)file_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist */
@ -223,12 +230,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist
(JNIEnv *env, jclass clss, jlong file_id)
{
hid_t retVal = -1;
hid_t retVal = H5I_INVALID_HID;
retVal = H5Fget_access_plist((hid_t)file_id);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Fget_access_plist((hid_t)file_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist */
@ -243,9 +252,12 @@ Java_hdf_hdf5lib_H5_H5Fget_1intent
{
unsigned intent = 0;
if (H5Fget_intent((hid_t)file_id, &intent) < 0)
h5libraryError(env);
UNUSED(cls);
if (H5Fget_intent((hid_t)file_id, &intent) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)intent;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1intent */
@ -258,14 +270,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Fclose
(JNIEnv *env, jclass clss, jlong file_id)
{
herr_t status = -1;
herr_t status = FAIL;
if (file_id > 0)
status = H5Fclose((hid_t)file_id );
UNUSED(clss);
if (status < 0)
h5libraryError(env);
if ((status = H5Fclose((hid_t)file_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)status;
} /* end Java_hdf_hdf5lib_H5__1H5Fclose */
@ -278,18 +290,19 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fmount
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong child_id, jlong plist_id)
{
herr_t status = -1;
const char *fileName;
const char *fileName = NULL;
herr_t status = FAIL;
PIN_JAVA_STRING(name, fileName);
if (fileName != NULL) {
status = H5Fmount((hid_t)loc_id, fileName, (hid_t)child_id, (hid_t)plist_id);
UNUSED(clss);
UNPIN_JAVA_STRING(name, fileName);
PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Fmount: file name not pinned");
if (status < 0)
h5libraryError(env);
}
if ((status = H5Fmount((hid_t)loc_id, fileName, (hid_t)child_id, (hid_t)plist_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (fileName)
UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Fmount */
@ -303,18 +316,19 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Funmount
(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
herr_t status = -1;
const char *fileName;
const char *fileName = NULL;
herr_t status = FAIL;
PIN_JAVA_STRING(name, fileName);
if (fileName != NULL) {
status = H5Funmount((hid_t)loc_id, fileName);
UNUSED(clss);
UNPIN_JAVA_STRING(name, fileName);
PIN_JAVA_STRING(ENVONLY, name, fileName, NULL, "H5Funmount: file name not pinned");
if (status < 0)
h5libraryError(env);
}
if ((status = H5Funmount((hid_t)loc_id, fileName)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (fileName)
UNPIN_JAVA_STRING(ENVONLY, name, fileName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Funmount */
@ -328,11 +342,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1freespace
(JNIEnv *env, jclass cls, jlong file_id)
{
hssize_t ret_val = H5Fget_freespace((hid_t)file_id);
hssize_t ret_val = -1;
if (ret_val < 0)
h5libraryError(env);
UNUSED(cls);
if ((ret_val = H5Fget_freespace((hid_t)file_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1freespace */
@ -345,12 +362,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Freopen
(JNIEnv *env, jclass clss, jlong file_id)
{
hid_t retVal = -1;
hid_t retVal = H5I_INVALID_HID;
retVal = H5Freopen((hid_t)file_id);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Freopen((hid_t)file_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Freopen */
@ -364,47 +383,40 @@ Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids
(JNIEnv *env, jclass cls, jlong file_id, jint types, jlong maxObjs,
jlongArray obj_id_list)
{
ssize_t ret_val = -1;
jlong *obj_id_listP;
jboolean isCopy;
hid_t *id_list;
size_t rank;
size_t i;
jboolean isCopy;
ssize_t ret_val = -1;
size_t i;
jsize rank;
jlong *obj_id_listP = NULL;
hid_t *id_list = NULL;
if (obj_id_list == NULL) {
h5nullArgument(env, "H5Fget_obj_ids: obj_id_list is NULL");
} /* end if */
else {
obj_id_listP = ENVPTR->GetLongArrayElements(ENVPAR obj_id_list, &isCopy);
if (obj_id_listP == NULL) {
h5JNIFatalError(env, "H5Fget_obj_ids: obj_id_list not pinned");
} /* end if */
else {
rank = (size_t)ENVPTR->GetArrayLength(ENVPAR obj_id_list);
UNUSED(cls);
id_list = (hid_t *)HDmalloc(rank * sizeof(hid_t));
if (id_list == NULL) {
ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, JNI_ABORT);
h5JNIFatalError(env, "H5Fget_obj_ids: obj_id_list not converted to hid_t");
} /* end if */
else {
ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list);
if (NULL == obj_id_list)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list is NULL");
if (ret_val < 0) {
ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, JNI_ABORT);
HDfree(id_list);
h5libraryError(env);
} /* end if */
else {
for (i = 0; i < rank; i++) {
obj_id_listP[i] = (jlong)id_list[i];
} /* end for */
HDfree(id_list);
ENVPTR->ReleaseLongArrayElements(ENVPAR obj_id_list, obj_id_listP, 0);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
PIN_LONG_ARRAY(ENVONLY, obj_id_list, obj_id_listP, &isCopy, "H5Fget_obj_ids: obj_id_list not pinned");
if ((rank = ENVPTR->GetArrayLength(ENVONLY, obj_id_list)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list length < 0");
}
if (NULL == (id_list = (hid_t *) HDmalloc((size_t)rank * sizeof(hid_t))))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed");
if ((ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
for (i = 0; i < (size_t)rank; i++) {
obj_id_listP[i] = (jlong)id_list[i];
} /* end for */
done:
if (id_list)
HDfree(id_list);
if (obj_id_listP)
UNPIN_LONG_ARRAY(ENVONLY, obj_id_list, obj_id_listP, (ret_val < 0) ? JNI_ABORT : 0);
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids */
@ -418,11 +430,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1obj_1count
(JNIEnv *env, jclass cls, jlong file_id, jint types)
{
ssize_t ret_val = H5Fget_obj_count((hid_t)file_id, (unsigned int)types);
ssize_t ret_val = -1;
if (ret_val < 0)
h5libraryError(env);
UNUSED(cls);
if ((ret_val = H5Fget_obj_count((hid_t)file_id, (unsigned int)types)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1obj_1count_1long */
@ -437,9 +452,12 @@ Java_hdf_hdf5lib_H5_H5Fget_1filesize
{
hsize_t size = 0;
if (H5Fget_filesize ((hid_t)file_id, &size) < 0)
h5libraryError(env);
UNUSED(clss);
if (H5Fget_filesize((hid_t)file_id, &size) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong) size;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1filesize */
@ -454,9 +472,12 @@ Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate
{
double rate = 0.0;
if (H5Fget_mdc_hit_rate((hid_t)file_id, &rate) < 0)
h5libraryError(env);
UNUSED(cls);
if (H5Fget_mdc_hit_rate((hid_t)file_id, &rate) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jdouble)rate;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate */
@ -469,33 +490,37 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size
(JNIEnv *env, jclass cls, jlong file_id, jlongArray metadata_cache)
{
jint size = 0;
jlong *metadata_cache_ptr;
size_t max_size = 0, min_clean_size = 0, cur_size = 0;
int cur_num_entries = -1;
jboolean isCopy;
jboolean isCopy;
size_t max_size = 0, min_clean_size = 0, cur_size = 0;
jlong *metadata_cache_ptr = NULL;
jsize size = 0;
int cur_num_entries = -1;
if (metadata_cache == NULL) {
h5nullArgument(env, "H5Fget_mdc_size: metadata_cache is NULL");
} /* end if */
else {
size = (int)ENVPTR->GetArrayLength(ENVPAR metadata_cache);
if (size < 3) {
h5badArgument(env, "H5Fget_mdc_size: length of metadata_cache < 3.");
} /* end if */
else {
if (H5Fget_mdc_size((hid_t)file_id, &max_size, &min_clean_size, &cur_size, &cur_num_entries) < 0) {
h5libraryError(env);
} /* end if */
else {
metadata_cache_ptr = ENVPTR->GetLongArrayElements(ENVPAR metadata_cache, &isCopy);
metadata_cache_ptr[0] = (jlong)max_size;
metadata_cache_ptr[1] = (jlong)min_clean_size;
metadata_cache_ptr[2] = (jlong)cur_size;
ENVPTR->ReleaseLongArrayElements(ENVPAR metadata_cache, metadata_cache_ptr, 0);
} /* end else */
} /* end else */
} /* end else */
UNUSED(cls);
if (NULL == metadata_cache)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: metadata cache array is NULL");
if ((size = ENVPTR->GetArrayLength(ENVONLY, metadata_cache)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: metadata_cache length < 0");
}
if (size < 3)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_size: length of metadata_cache array < 3");
if (H5Fget_mdc_size((hid_t)file_id, &max_size, &min_clean_size, &cur_size, &cur_num_entries) < 0)
H5_LIBRARY_ERROR(ENVONLY);
PIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, &isCopy, "H5Fget_mdc_size: metadata_cache array not pinned");
metadata_cache_ptr[0] = (jlong)max_size;
metadata_cache_ptr[1] = (jlong)min_clean_size;
metadata_cache_ptr[2] = (jlong)cur_size;
done:
if (metadata_cache_ptr)
UNPIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, 0);
return (jint)cur_num_entries;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size */
@ -509,31 +534,36 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1info
(JNIEnv *env, jclass clss, jlong obj_id)
{
H5F_info2_t finfo;
jvalue args[9];
H5F_info2_t finfo;
jobject ihinfobuf;
jvalue args[9];
jobject ret_obj = NULL;
if (H5Fget_info2((hid_t)obj_id, &finfo) < 0) {
h5libraryError(env);
} /* end if */
else {
args[0].j = (jlong)finfo.sohm.msgs_info.index_size;
args[1].j = (jlong)finfo.sohm.msgs_info.heap_size;
CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args);
ihinfobuf = ret_obj;
UNUSED(clss);
args[0].i = (jint)finfo.super.version;
args[1].j = (jlong)finfo.super.super_size;
args[2].j = (jlong)finfo.super.super_ext_size;
args[3].i = (jint)finfo.free.version;
args[4].j = (jlong)finfo.free.meta_size;
args[5].j = (jlong)finfo.free.tot_space;
args[6].j = (jint)finfo.sohm.version;
args[7].j = (jlong)finfo.sohm.hdr_size;
args[8].l = ihinfobuf;
CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5F_info2_t", "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args);
} /* end else */
if (H5Fget_info2((hid_t)obj_id, &finfo) < 0)
H5_LIBRARY_ERROR(ENVONLY);
args[0].j = (jlong)finfo.sohm.msgs_info.index_size;
args[1].j = (jlong)finfo.sohm.msgs_info.heap_size;
CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj);
ihinfobuf = ret_obj;
args[0].i = (jint)finfo.super.version;
args[1].j = (jlong)finfo.super.super_size;
args[2].j = (jlong)finfo.super.super_ext_size;
args[3].i = (jint)finfo.free.version;
args[4].j = (jlong)finfo.free.meta_size;
args[5].j = (jlong)finfo.free.tot_space;
args[6].j = (jint)finfo.sohm.version;
args[7].j = (jlong)finfo.sohm.hdr_size;
args[8].l = ihinfobuf;
CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5F_info2_t", "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj);
done:
return ret_obj;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1info */
@ -546,8 +576,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats
(JNIEnv *env, jclass cls, jlong file_id)
{
UNUSED(cls);
if (H5Freset_mdc_hit_rate_stats((hid_t)file_id) < 0)
h5libraryError(env);
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats */
/*
@ -559,8 +594,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache
(JNIEnv *env, jclass cls, jlong file_id)
{
UNUSED(cls);
if (H5Fclear_elink_file_cache((hid_t)file_id) < 0)
h5libraryError(env);
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache */
/*
@ -572,8 +612,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write
(JNIEnv *env, jclass cls, jlong file_id)
{
UNUSED(cls);
if (H5Fstart_swmr_write((hid_t)file_id) < 0)
h5libraryError(env);
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write */
/*
@ -585,8 +630,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging
(JNIEnv *env, jclass cls, jlong file_id)
{
UNUSED(cls);
if (H5Fstart_mdc_logging((hid_t)file_id) < 0)
h5libraryError(env);
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging */
/*
@ -598,8 +648,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging
(JNIEnv *env, jclass cls, jlong file_id)
{
UNUSED(cls);
if (H5Fstop_mdc_logging((hid_t)file_id) < 0)
h5libraryError(env);
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging */
/*
@ -611,32 +666,38 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status
(JNIEnv *env, jclass cls, jlong file_id, jbooleanArray mdc_logging_status)
{
jboolean *mdc_logging_status_ptr = NULL;
jboolean isCopy;
hbool_t is_enabled;
hbool_t is_currently_logging;
jboolean *mdc_logging_status_ptr;
jint size;
jboolean isCopy;
jsize size;
if (mdc_logging_status == NULL) {
h5nullArgument(env, "H5Fget_mdc_logging_status: mdc_logging_status is NULL");
} /* end if */
else {
size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_logging_status);
if (size < 2) {
h5badArgument(env, "H5Fget_mdc_logging_status: length of mdc_logging_status < 2.");
} /* end if */
else {
if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0) {
h5libraryError(env);
} /* end if */
else {
mdc_logging_status_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_logging_status, &isCopy);
mdc_logging_status_ptr[0] = (jboolean)is_enabled;
mdc_logging_status_ptr[1] = (jboolean)is_currently_logging;
ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_logging_status, mdc_logging_status_ptr, 0);
} /* end else */
} /* end else */
} /* end else */
UNUSED(cls);
if (NULL == mdc_logging_status)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: mdc_logging_status is NULL");
if ((size = ENVPTR->GetArrayLength(ENVONLY, mdc_logging_status)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: mdc_logging_status length < 0");
}
if (size < 2)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_mdc_logging_status: length of mdc_logging_status < 2");
if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0)
H5_LIBRARY_ERROR(ENVONLY);
PIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, &isCopy, "H5Fget_mdc_logging_status: mdc_logging_status array not pinned");
mdc_logging_status_ptr[0] = (jboolean)is_enabled;
mdc_logging_status_ptr[1] = (jboolean)is_currently_logging;
done:
if (mdc_logging_status_ptr)
UNPIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, 0);
return;
} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status */
/*
@ -648,17 +709,18 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint
(JNIEnv *env, jclass clss, jlong file_id, jboolean minimize)
{
herr_t retVal = -1;
hbool_t minimize_val;
hbool_t minimize_val;
herr_t retVal = FAIL;
if (minimize == JNI_TRUE)
minimize_val = TRUE;
else
minimize_val = FALSE;
UNUSED(clss);
retVal = H5Fset_dset_no_attrs_hint((hid_t)file_id, (hbool_t)minimize_val);
if (retVal < 0)
h5libraryError(env);
minimize_val = (minimize == JNI_TRUE) ? TRUE : FALSE;
if ((retVal = H5Fset_dset_no_attrs_hint((hid_t)file_id, (hbool_t)minimize_val)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
}
/*
@ -670,17 +732,18 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint
(JNIEnv *env, jclass clss, jlong file_id)
{
hbool_t minimize = FALSE;
jboolean bval = JNI_FALSE;
jboolean bval = JNI_FALSE;
hbool_t minimize = FALSE;
if (H5Fget_dset_no_attrs_hint((hid_t)file_id, (hbool_t *)&minimize) < 0) {
h5libraryError(env);
}
else {
if (minimize == TRUE)
bval = JNI_TRUE;
} /* end else */
UNUSED(clss);
if (H5Fget_dset_no_attrs_hint((hid_t)file_id, (hbool_t *)&minimize) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (minimize == TRUE)
bval = JNI_TRUE;
done:
return bval;
}
@ -693,11 +756,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds
(JNIEnv *env, jclass clss, jlong file_id, jint low, jint high)
{
herr_t retVal = -1;
herr_t retVal = FAIL;
retVal = H5Fset_libver_bounds((hid_t)file_id, (H5F_libver_t)low, (H5F_libver_t)high);
if(retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Fset_libver_bounds((hid_t)file_id, (H5F_libver_t)low, (H5F_libver_t)high)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds */

2
java/src/jni/h5fImp.h
View File

@ -72,7 +72,7 @@ Java_hdf_hdf5lib_H5_H5Fis_1hdf5
* Signature: (Ljava/lang/String;J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Fis_1ccessible
Java_hdf_hdf5lib_H5_H5Fis_1accessible
(JNIEnv*, jclass, jstring, jlong);
/*

216
java/src/jni/h5gImp.c
View File

@ -29,7 +29,10 @@ extern "C" {
#include "h5util.h"
#include "h5gImp.h"
extern JavaVM *jvm;
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@ -40,12 +43,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Gclose
(JNIEnv *env, jclass clss, jlong group_id)
{
herr_t retVal = -1;
herr_t retVal = FAIL;
retVal = H5Gclose((hid_t)group_id);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Gclose((hid_t)group_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Gclose */
@ -63,33 +68,46 @@ jobject
create_H5G_info_t
(JNIEnv *env, H5G_info_t group_info)
{
jclass cls;
jfieldID fid_storage_type, fid_nlinks, fid_max_corder, fid_mounted;
jboolean jmounted;
jclass cls;
jint storage_type;
jobject obj = NULL;
jfieldID fid_storage_type, fid_nlinks, fid_max_corder, fid_mounted;
cls = ENVPTR->FindClass(ENVPAR "hdf/hdf5lib/structs/H5G_info_t");
if (cls != NULL) {
obj = ENVPTR->AllocObject(ENVPAR cls);
if (obj != NULL) {
if ((fid_storage_type = ENVPTR->GetFieldID(ENVPAR cls, "storage_type", "I")) != NULL) {
if ((fid_nlinks = ENVPTR->GetFieldID(ENVPAR cls, "nlinks", "J")) != NULL) {
if ((fid_max_corder = ENVPTR->GetFieldID(ENVPAR cls, "max_corder", "J")) != NULL) {
if ((fid_mounted = ENVPTR->GetFieldID(ENVPAR cls, "mounted", "Z")) != NULL) {
jmounted = (group_info.mounted==0) ? JNI_FALSE : JNI_TRUE;
storage_type = (jint)group_info.storage_type;
if (NULL == (cls = ENVPTR->FindClass(ENVONLY, "hdf/hdf5lib/structs/H5G_info_t")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetIntField(ENVPAR obj, fid_storage_type, (jint)storage_type);
ENVPTR->SetLongField(ENVPAR obj, fid_nlinks, (jlong)group_info.nlinks);
ENVPTR->SetLongField(ENVPAR obj, fid_max_corder, (jlong)group_info.max_corder);
ENVPTR->SetBooleanField(ENVPAR obj, fid_mounted, jmounted);
}
}
}
}
}
}
if (NULL == (obj = ENVPTR->AllocObject(ENVONLY, cls)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (fid_storage_type = ENVPTR->GetFieldID(ENVONLY, cls, "storage_type", "I")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (fid_nlinks = ENVPTR->GetFieldID(ENVONLY, cls, "nlinks", "J")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (fid_max_corder = ENVPTR->GetFieldID(ENVONLY, cls, "max_corder", "J")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (fid_mounted = ENVPTR->GetFieldID(ENVONLY, cls, "mounted", "Z")))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
jmounted = (group_info.mounted == 0) ? JNI_FALSE : JNI_TRUE;
storage_type = (jint)group_info.storage_type;
ENVPTR->SetIntField(ENVONLY, obj, fid_storage_type, (jint)storage_type);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetLongField(ENVONLY, obj, fid_nlinks, (jlong)group_info.nlinks);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetLongField(ENVONLY, obj, fid_max_corder, (jlong)group_info.max_corder);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetBooleanField(ENVONLY, obj, fid_mounted, jmounted);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
return obj;
} /* end create_H5G_info_t */
@ -103,17 +121,19 @@ Java_hdf_hdf5lib_H5__1H5Gcreate2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name,
jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
{
hid_t group_id = -1;
const char *gName;
const char *grpName = NULL;
hid_t group_id = H5I_INVALID_HID;
PIN_JAVA_STRING(name, gName);
if (gName != NULL) {
group_id = H5Gcreate2((hid_t)loc_id, gName, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id );
UNUSED(clss);
UNPIN_JAVA_STRING(name, gName);
if (group_id < 0)
h5libraryError(env);
}
PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gcreate2: group name not pinned");
if ((group_id = H5Gcreate2((hid_t)loc_id, grpName, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gcreate2 */
@ -127,12 +147,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gcreate_1anon
(JNIEnv *env, jclass cls, jlong loc_id, jlong gcpl_id, jlong gapl_id)
{
hid_t group_id = -1;
hid_t group_id = H5I_INVALID_HID;
group_id = H5Gcreate_anon((hid_t)loc_id, (hid_t)gcpl_id, (hid_t)gapl_id);
if (group_id < 0)
h5libraryError(env);
UNUSED(cls);
if ((group_id = H5Gcreate_anon((hid_t)loc_id, (hid_t)gcpl_id, (hid_t)gapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gcreate_1anon */
@ -145,18 +167,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Gopen2
(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id)
{
hid_t group_id = -1;
const char *gName;
const char *grpName = NULL;
hid_t group_id = H5I_INVALID_HID;
PIN_JAVA_STRING(name, gName);
if (gName != NULL) {
group_id = H5Gopen2((hid_t)loc_id, gName, (hid_t)access_plist_id );
UNUSED(clss);
UNPIN_JAVA_STRING(name, gName);
PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gopen2: group name not pinned");
if (group_id < 0)
h5libraryError(env);
}
if ((group_id = H5Gopen2((hid_t)loc_id, grpName, (hid_t)access_plist_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return (jlong)group_id;
} /* end Java_hdf_hdf5lib_H5__1H5Gopen2 */
@ -171,11 +194,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1create_1plist
(JNIEnv *env, jclass cls, jlong loc_id)
{
hid_t plist_id = H5Gget_create_plist((hid_t)loc_id);
hid_t plist_id = H5I_INVALID_HID;
if (plist_id < 0)
h5libraryError(env);
UNUSED(cls);
if ((plist_id = H5Gget_create_plist((hid_t)loc_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)plist_id;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1create_1plist */
@ -188,14 +214,18 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info
(JNIEnv *env, jclass cls, jlong loc_id)
{
jobject obj = NULL;
H5G_info_t group_info;
jobject obj = NULL;
UNUSED(cls);
if (H5Gget_info((hid_t)loc_id, &group_info) < 0)
h5libraryError(env);
else
obj = create_H5G_info_t(env, group_info);
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (obj = create_H5G_info_t(env, group_info)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info: unable to create H5G_info_t object");
done:
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info */
@ -208,23 +238,27 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name
(JNIEnv *env, jclass cls, jlong loc_id, jstring name, jlong lapl_id)
{
jobject obj = NULL;
herr_t ret_val = -1;
const char *gName;
H5G_info_t group_info;
const char *grpName = NULL;
jobject obj = NULL;
herr_t ret_val = FAIL;
PIN_JAVA_STRING(name, gName);
if (gName != NULL) {
ret_val = H5Gget_info_by_name((hid_t)loc_id, gName, &group_info, (hid_t)lapl_id);
UNUSED(cls);
UNPIN_JAVA_STRING(name, gName);
PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_name: group name not pinned");
if (ret_val < 0)
h5libraryError(env);
else
obj = create_H5G_info_t(env, group_info);
if ((ret_val = H5Gget_info_by_name((hid_t)loc_id, grpName, &group_info, (hid_t)lapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (obj = create_H5G_info_t(env, group_info))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info_by_name: unable to create H5G_info_t object");
}
done:
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name */
@ -238,26 +272,30 @@ Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx
(JNIEnv *env, jclass cls, jlong loc_id, jstring name, jint index_type,
jint order, jlong n, jlong lapl_id)
{
jobject obj = NULL;
herr_t ret_val = -1;
const char *gName;
H5G_info_t group_info;
H5_index_t cindex_type = (H5_index_t)index_type;
H5_iter_order_t corder = (H5_iter_order_t)order;
H5_iter_order_t corder = (H5_iter_order_t)order;
H5_index_t cindex_type = (H5_index_t)index_type;
H5G_info_t group_info;
const char *grpName = NULL;
jobject obj = NULL;
herr_t ret_val = FAIL;
PIN_JAVA_STRING(name, gName);
if (gName != NULL) {
ret_val = H5Gget_info_by_idx((hid_t)loc_id, gName, cindex_type,
corder, (hsize_t)n, &group_info, (hid_t)lapl_id);
UNUSED(cls);
UNPIN_JAVA_STRING(name, gName);
PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_idx: group name not pinned");
if (ret_val < 0)
h5libraryError(env);
else
obj = create_H5G_info_t(env, group_info);
if ((ret_val = H5Gget_info_by_idx((hid_t)loc_id, grpName, cindex_type,
corder, (hsize_t)n, &group_info, (hid_t)lapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (obj = create_H5G_info_t(env, group_info))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_info_by_idx: unable to create H5G_info_t object");
}
done:
if (grpName)
UNPIN_JAVA_STRING(ENVONLY, name, grpName);
return obj;
} /* end Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx */
@ -270,8 +308,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Gflush
(JNIEnv *env, jclass clss, jlong loc_id)
{
UNUSED(clss);
if (H5Gflush((hid_t)loc_id) < 0)
h5libraryError(env);
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Gflush */
/*
@ -283,8 +326,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Grefresh
(JNIEnv *env, jclass clss, jlong loc_id)
{
UNUSED(clss);
if (H5Grefresh((hid_t)loc_id) < 0)
h5libraryError(env);
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Grefresh */

227
java/src/jni/h5iImp.c
View File

@ -27,7 +27,10 @@ extern "C" {
#include "h5jni.h"
#include "h5iImp.h"
extern JavaVM *jvm;
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@ -40,10 +43,12 @@ Java_hdf_hdf5lib_H5_H5Iget_1type
{
H5I_type_t retVal = H5I_BADID;
retVal = H5Iget_type((hid_t)obj_id);
if (retVal == H5I_BADID)
h5libraryError(env);
UNUSED(clss);
if (H5I_BADID == (retVal = H5Iget_type((hid_t)obj_id)))
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1type */
@ -56,32 +61,32 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1name_1long
(JNIEnv *env, jclass clss, jlong obj_id, jobjectArray name, jlong buf_size)
{
char *aName;
jstring str;
hssize_t size = -1;
long bs;
ssize_t size = -1;
jstring str;
char *aName = NULL;
UNUSED(clss);
if (buf_size < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Iget_name_long: buf_size < 0");
if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name_long: malloc failed");
if ((size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
aName[buf_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, str);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (aName)
HDfree(aName);
bs = (long)buf_size;
if (bs <= 0) {
h5badArgument(env, "H5Iget_name: buf_size <= 0");
} /* end if */
else {
aName = (char*)HDmalloc(sizeof(char) * (size_t)bs);
if (aName == NULL) {
h5outOfMemory(env, "H5Iget_name: malloc failed");
} /* end if */
else {
size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size);
if (size < 0) {
h5libraryError(env);
} /* end if */
else {
str = ENVPTR->NewStringUTF(ENVPAR aName);
ENVPTR->SetObjectArrayElement(ENVPAR name, 0, str);
}
HDfree(aName);
}
}
return (jlong)size;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1name */
@ -95,33 +100,30 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1name
(JNIEnv *env, jclass clss, jlong obj_id)
{
char *aName;
jstring str = NULL;
ssize_t buf_size;
ssize_t buf_size = -1;
char *aName = NULL;
/* get the length of the name */
buf_size = H5Iget_name((hid_t)obj_id, NULL, 0);
UNUSED(clss);
/* Get the length of the name */
if ((buf_size = H5Iget_name((hid_t)obj_id, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name: malloc failed");
if (H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1) < 0)
H5_LIBRARY_ERROR(ENVONLY);
aName[buf_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (aName)
HDfree(aName);
if (buf_size <= 0) {
h5badArgument(env, "H5Iget_name: buf_size <= 0");
} /* end if */
else {
buf_size++; /* add extra space for the null terminator */
aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
if (aName == NULL) {
h5outOfMemory(env, "H5Iget_name: malloc failed");
} /* end if */
else {
buf_size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size);
if (buf_size < 0) {
h5libraryError(env);
} /* end if */
else {
str = ENVPTR->NewStringUTF(ENVPAR aName);
}
HDfree(aName);
}
}
return str;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1name */
@ -134,12 +136,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
int retVal = -1;
int retVal = FAIL;
retVal = H5Iget_ref((hid_t)obj_id);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Iget_ref((hid_t)obj_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1ref */
@ -152,12 +156,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iinc_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
int retVal = -1;
int retVal = FAIL;
retVal = H5Iinc_ref((hid_t)obj_id);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Iinc_ref((hid_t)obj_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iinc_1ref */
@ -170,12 +176,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Idec_1ref
(JNIEnv *env, jclass clss, jlong obj_id)
{
int retVal = -1;
int retVal = FAIL;
retVal = H5Idec_ref((hid_t)obj_id);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Idec_ref((hid_t)obj_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Idec_1ref */
@ -189,12 +197,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1file_1id
(JNIEnv *env, jclass clss, jlong obj_id)
{
hid_t file_id = -1;
hid_t file_id = H5I_INVALID_HID;
file_id = H5Iget_file_id((hid_t)obj_id);
if (file_id < 0)
h5libraryError(env);
UNUSED(clss);
if ((file_id = H5Iget_file_id((hid_t)obj_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong) file_id;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1file_1id */
@ -207,12 +217,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iget_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
int retVal = -1;
int retVal = FAIL;
retVal = H5Iget_type_ref((H5I_type_t)type);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Iget_type_ref((H5I_type_t)type)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iget_1type_1ref */
@ -225,12 +237,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Idec_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
int retVal = -1;
int retVal = FAIL;
retVal = H5Idec_type_ref((H5I_type_t)type);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Idec_type_ref((H5I_type_t)type)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Idec_1type_1ref */
@ -243,12 +257,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref
(JNIEnv *env, jclass clss, jint type)
{
int retVal = -1;
int retVal = FAIL;
retVal = H5Iinc_type_ref((H5I_type_t)type);
if (retVal < 0)
h5libraryError(env);
UNUSED(clss);
if ((retVal = H5Iinc_type_ref((H5I_type_t)type)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref */
@ -261,11 +277,14 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Inmembers
(JNIEnv *env, jclass clss, jint type)
{
hsize_t num_members;
hsize_t num_members = 0;
UNUSED(clss);
if (H5Inmembers((H5I_type_t)type, &num_members) < 0)
h5libraryError(env);
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)num_members;
} /* end Java_hdf_hdf5lib_H5_H5Inmembers */
@ -280,12 +299,14 @@ Java_hdf_hdf5lib_H5_H5Iis_1valid
{
htri_t bval = JNI_FALSE;
bval = H5Iis_valid((hid_t)obj_id);
if (bval > 0)
bval = JNI_TRUE;
else if (bval < 0)
h5libraryError(env);
UNUSED(clss);
if ((bval = H5Iis_valid((hid_t)obj_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
done:
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5Iis_1valid */
/*
@ -299,12 +320,14 @@ Java_hdf_hdf5lib_H5_H5Itype_1exists
{
htri_t bval = JNI_FALSE;
bval = H5Itype_exists((H5I_type_t)type);
if (bval > 0)
bval = JNI_TRUE;
else if (bval < 0)
h5libraryError(env);
UNUSED(clss);
if ((bval = H5Itype_exists((H5I_type_t)type)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
done:
return (jboolean)bval;
} /* end else Java_hdf_hdf5lib_H5_H5Itype_1exists */
@ -317,8 +340,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Iclear_1type
(JNIEnv *env, jclass clss, jint type, jboolean force)
{
if (H5Iclear_type((H5I_type_t)type, (hbool_t)force) < 0)
h5libraryError(env);
UNUSED(clss);
if (H5Iclear_type((H5I_type_t)type, (hbool_t)force) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Iclear_1type */
/*
@ -330,8 +358,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Idestroy_1type
(JNIEnv *env, jclass clss, jint type)
{
if (H5Idestroy_type((H5I_type_t)type) < 0)
h5libraryError(env);
UNUSED(clss);
if (H5Idestroy_type((H5I_type_t)type) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Idestroy_1type */
#ifdef __cplusplus

374
java/src/jni/h5jni.h
View File

@ -27,147 +27,299 @@
#ifdef __cplusplus
#define ENVPTR (env)
#define ENVPAR
#define ENVONLY
#define CBENVPTR (cbenv)
#define CBENVPAR
#define CBENVONLY
#define JVMPTR (jvm)
#define JVMPAR
#define JVMPAR2
#else /* __cplusplus */
#define ENVPTR (*env)
#define ENVPAR env,
#define ENVONLY env
#define CBENVPTR (*cbenv)
#define CBENVPAR cbenv,
#define CBENVONLY cbenv
#define JVMPTR (*jvm)
#define JVMPAR jvm
#define JVMPAR2 jvm,
#endif /* __cplusplus */
/*
* Used to silence compiler when a particular
* function parameter is not used.
*/
#define UNUSED(o) (void) o
/* Macros for class access */
/* Calling code must define ret_obj as jobject */
#define CALL_CONSTRUCTOR(classname,classsig,args) { \
jclass cls; \
jmethodID constructor; \
cls = ENVPTR->FindClass(ENVPAR (classname)); \
if (cls == 0) { \
h5JNIFatalError(env, "JNI error: GetObjectClass\n"); \
ret_obj = NULL; \
} \
constructor = ENVPTR->GetMethodID(ENVPAR cls, "<init>", (classsig)); \
if (constructor == 0) { \
h5JNIFatalError(env, "JNI error: GetMethodID failed\n"); \
ret_obj = NULL; \
} \
ret_obj = ENVPTR->NewObjectA(ENVPAR cls, constructor, (args)); \
#define CALL_CONSTRUCTOR(env, classname, classsig, args, ret_obj) \
{ \
jmethodID constructor; \
jclass cls; \
\
if (NULL == (cls = ENVPTR->FindClass(env, (classname)))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, "JNI error: GetObjectClass"); \
} \
if (NULL == (constructor = ENVPTR->GetMethodID(ENVONLY, cls, "<init>", (classsig)))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, "JNI error: GetMethodID failed"); \
} \
if (NULL == (ret_obj = ENVPTR->NewObjectA(ENVONLY, cls, constructor, (args)))) { \
CHECK_JNI_EXCEPTION(env, JNI_FALSE); \
} \
}
/*
* Macros for pinning/unpinning objects.
*/
#define PIN_BYTE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = ENVPTR->GetByteArrayElements(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define PIN_BYTE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = (jbyte *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define UNPIN_BYTE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
{ \
ENVPTR->ReleaseByteArrayElements(env, pinnedArray, (jbyte *) bufToRelease, freeMode); \
}
#define PIN_SHORT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = ENVPTR->GetShortArrayElements(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define PIN_SHORT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = (jshort *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define UNPIN_SHORT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
{ \
ENVPTR->ReleaseShortArrayElements(env, pinnedArray, (jshort *) bufToRelease, freeMode); \
}
#define PIN_INT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = ENVPTR->GetIntArrayElements(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define PIN_INT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = (jint *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define UNPIN_INT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
{ \
ENVPTR->ReleaseIntArrayElements(env, pinnedArray, (jint *) bufToRelease, freeMode); \
}
#define PIN_LONG_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = ENVPTR->GetLongArrayElements(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define PIN_LONG_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = (jlong *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define UNPIN_LONG_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
{ \
ENVPTR->ReleaseLongArrayElements(env, pinnedArray, (jlong *) bufToRelease, freeMode); \
}
#define PIN_FLOAT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = ENVPTR->GetFloatArrayElements(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define PIN_FLOAT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = (jfloat *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define UNPIN_FLOAT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
{ \
ENVPTR->ReleaseFloatArrayElements(env, pinnedArray, (jfloat *) bufToRelease, freeMode); \
}
#define PIN_DOUBLE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = ENVPTR->GetDoubleArrayElements(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define PIN_DOUBLE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = (jdouble *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define UNPIN_DOUBLE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
{ \
ENVPTR->ReleaseDoubleArrayElements(env, pinnedArray, (jdouble *) bufToRelease, freeMode); \
}
#define PIN_BOOL_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = ENVPTR->GetBooleanArrayElements(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define PIN_BOOL_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \
{ \
if (NULL == (outBuf = (jboolean *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define UNPIN_BOOL_ARRAY(env, pinnedArray, bufToRelease, freeMode) \
{ \
ENVPTR->ReleaseBooleanArrayElements(env, pinnedArray, (jboolean *) bufToRelease, freeMode); \
}
#define UNPIN_ARRAY_CRITICAL(env, pinnedArray, bufToRelease, freeMode) \
{ \
ENVPTR->ReleasePrimitiveArrayCritical(env, pinnedArray, bufToRelease, freeMode); \
}
/* Macros for string access */
#define PIN_JAVA_STRING(javastr,localstr) { \
jboolean isCopy; \
(localstr) = NULL; \
if ((javastr) == NULL) { \
h5nullArgument(env, "java string is NULL"); \
} \
else { \
(localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
if ((localstr) == NULL) { \
h5JNIFatalError(env, "local c string is not pinned"); \
} \
} \
#define PIN_JAVA_STRING(env, stringToPin, outString, isCopy, failErrMsg) \
{ \
if (NULL == (outString = ENVPTR->GetStringUTFChars(env, stringToPin, isCopy))) { \
CHECK_JNI_EXCEPTION(env, JNI_TRUE); \
H5_JNI_FATAL_ERROR(env, failErrMsg); \
} \
}
#define UNPIN_JAVA_STRING(javastr,localstr) { \
ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
#define UNPIN_JAVA_STRING(env, pinnedString, stringToRelease) \
{ \
ENVPTR->ReleaseStringUTFChars(env, pinnedString, stringToRelease); \
}
#define PIN_JAVA_STRING_TWO(javastr,localstr,java2str,local2str) { \
jboolean isCopy; \
(localstr) = NULL; \
(local2str) = NULL; \
if ((javastr) == NULL) { \
h5nullArgument(env, "java string is NULL"); \
} \
else if ((java2str) == NULL) { \
h5nullArgument(env, "second java string is NULL"); \
} \
else { \
(localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
if ((localstr) == NULL) { \
h5JNIFatalError(env, "local c string is not pinned"); \
} \
else { \
(local2str) = ENVPTR->GetStringUTFChars(ENVPAR (java2str), &isCopy); \
if ((local2str) == NULL) { \
ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
h5JNIFatalError(env, "second local c string is not pinned"); \
} \
} \
} \
}
#define UNPIN_JAVA_STRING_TWO(javastr,localstr,java2str,local2str) { \
ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
}
#define PIN_JAVA_STRING_THREE(javastr,localstr,java2str,local2str,java3str,local3str) { \
jboolean isCopy; \
(localstr) = NULL; \
(local2str) = NULL; \
(local3str) = NULL; \
if ((javastr) == NULL) { \
h5nullArgument(env, "java string is NULL"); \
} \
else if ((java2str) == NULL) { \
h5nullArgument(env, "second java string is NULL"); \
} \
else if ((java3str) == NULL) { \
h5nullArgument(env, "third java string is NULL"); \
} \
else { \
(localstr) = ENVPTR->GetStringUTFChars(ENVPAR (javastr), &isCopy); \
if ((localstr) == NULL) { \
h5JNIFatalError(env, "local c string is not pinned"); \
} \
else { \
(local2str) = ENVPTR->GetStringUTFChars(ENVPAR (java2str), &isCopy); \
if ((local2str) == NULL) { \
ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
h5JNIFatalError(env, "second local c string is not pinned"); \
} \
else { \
(local3str) = ENVPTR->GetStringUTFChars(ENVPAR (java3str), &isCopy); \
if ((local3str) == NULL) { \
ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
h5JNIFatalError(env, "third local c string is not pinned"); \
} \
} \
} \
} \
}
#define UNPIN_JAVA_STRING_THREE(javastr,localstr,java2str,local2str,java3str,local3str) { \
ENVPTR->ReleaseStringUTFChars(ENVPAR (javastr), (localstr)); \
ENVPTR->ReleaseStringUTFChars(ENVPAR (java2str), (local2str)); \
ENVPTR->ReleaseStringUTFChars(ENVPAR (java3str), (local3str)); \
/*
* Macro to check for a JNI exception after a JNI method is called.
* If an exception occurred, the value of 'clearException' will determine
* whether or not the exception will be cleared in order for the native
* method to do its own error handling.
*
* If the exception does not get cleared, this macro will skip to the
* cleanup+return section of the native method, since at that point
* cleaning up and returning is the only safe thing that can be done.
*/
#define CHECK_JNI_EXCEPTION(env, clearException) \
{ \
if (JNI_TRUE == (*env)->ExceptionCheck(env)) { \
if (JNI_TRUE == clearException) \
(*env)->ExceptionClear(env); \
else \
goto done; \
} \
}
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
extern jboolean h5JNIFatalError(JNIEnv *, const char *);
extern jboolean h5nullArgument(JNIEnv *, const char *);
extern jboolean h5badArgument (JNIEnv *, const char *);
extern jboolean h5outOfMemory (JNIEnv *, const char *);
extern jboolean h5libraryError(JNIEnv *env );
extern jboolean h5raiseException(JNIEnv *, const char *, const char *);
extern jboolean h5JNIFatalError(JNIEnv *env, const char *);
extern jboolean h5nullArgument(JNIEnv *env, const char *);
extern jboolean h5badArgument(JNIEnv *env, const char *);
extern jboolean h5outOfMemory(JNIEnv *env, const char *);
extern jboolean h5libraryError(JNIEnv *env);
extern jboolean h5raiseException(JNIEnv *env, const char *, const char *);
extern jboolean h5unimplemented( JNIEnv *env, const char *functName);
/*
* The following macros are to facilitate immediate cleanup+return
* from a native JNI method when an exception is to be thrown.
* Since, in general, the "cleanup" methods are the only safe JNI
* methods to call once an exception has occurred, we want to immediately
* cleanup and return instead of letting the native method continue.
*
* Note that a native method can clear the exception when one occurs and
* then do its own error handling, but we instead opt to immediately return.
*/
#define H5_JNI_FATAL_ERROR(env, message) \
{ \
h5JNIFatalError(env, message); \
goto done; \
}
#define H5_NULL_ARGUMENT_ERROR(env, message) \
{ \
h5nullArgument(env, message); \
goto done; \
}
#define H5_BAD_ARGUMENT_ERROR(env, message) \
{ \
h5badArgument(env, message); \
goto done; \
}
#define H5_OUT_OF_MEMORY_ERROR(env, message) \
{ \
h5outOfMemory(env, message); \
goto done; \
}
#define H5_LIBRARY_ERROR(env) \
{ \
h5libraryError(env); \
goto done; \
}
#define H5_RAISE_EXCEPTION(env, message, exception) \
{ \
h5raiseException(env, message, exception); \
goto done; \
}
#define H5_UNIMPLEMENTED(env, message) \
{ \
h5unimplemented(env, message); \
goto done; \
}
/* implemented at H5.c */
extern jint get_enum_value(JNIEnv *env, jobject enum_obj);
extern jobject get_enum_object(JNIEnv *env, const char* enum_class_name,

831
java/src/jni/h5lImp.c
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886
java/src/jni/h5oImp.c
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36
java/src/jni/h5pACPLImp.c Normal file
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pACPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

27
java/src/jni/h5pACPLImp.h Normal file
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PACPL
#define _Included_hdf_hdf5lib_H5_H5PACPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PACPL */

322
java/src/jni/h5pDAPLImp.c Normal file
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pDAPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
extern JavaVM *jvm;
typedef struct _cb_wrapper {
jobject visit_callback;
jobject op_data;
} cb_wrapper;
static herr_t H5D_append_cb(hid_t dataset_id, hsize_t *cur_dims, void *cb_data);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_chunk_cache
* Signature: (JJJD)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
(JNIEnv *env, jclass clss, jlong dapl, jlong rdcc_nslots,
jlong rdcc_nbytes, jdouble rdcc_w0)
{
UNUSED(clss);
if (H5Pset_chunk_cache((hid_t)dapl, (size_t)rdcc_nslots, (size_t)rdcc_nbytes, (double) rdcc_w0) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_chunk_cache
* Signature: (J[J[J[D)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
(JNIEnv *env, jclass clss, jlong dapl, jlongArray rdcc_nslots,
jlongArray rdcc_nbytes, jdoubleArray rdcc_w0)
{
jboolean isCopy;
jdouble *w0Array = NULL;
jlong *rdcc_nslotsArray = NULL;
jlong *nbytesArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (NULL != rdcc_w0)
PIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, &isCopy, "H5Pget_chunk_cache: rdcc_w0 array not pinned");
if (NULL != rdcc_nslots)
PIN_LONG_ARRAY(ENVONLY, rdcc_nslots, rdcc_nslotsArray, &isCopy, "H5Pget_chunk_cache: rdcc_nslots array not pinned");
if (NULL != rdcc_nbytes)
PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_chunk_cache: nbytesArray array not pinned");
{
/* direct cast (size_t *)variable fails on 32-bit environment */
long long rdcc_nslots_temp = *rdcc_nslotsArray;
long long nbytes_temp = *nbytesArray;
size_t rdcc_nslots_t = (size_t) rdcc_nslots_temp;
size_t nbytes_t = (size_t) nbytes_temp;
if ((status = H5Pget_chunk_cache((hid_t)dapl, &rdcc_nslots_t, &nbytes_t, (double *)w0Array)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
*rdcc_nslotsArray = (jlong)rdcc_nslots_t;
*nbytesArray = (jlong)nbytes_t;
} /* end direct cast special handling */
done:
if (nbytesArray)
UNPIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, (status < 0) ? JNI_ABORT : 0);
if (rdcc_nslotsArray)
UNPIN_LONG_ARRAY(ENVONLY, rdcc_nslots, rdcc_nslotsArray, (status < 0) ? JNI_ABORT : 0);
if (w0Array)
UNPIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, (status < 0) ? JNI_ABORT : 0);
} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_efile_prefix
* Signature: (JLjava/lang/String;)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
(JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix)
{
const char *extFilePrefix = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
PIN_JAVA_STRING(ENVONLY, prefix, extFilePrefix, NULL, "H5Pset_efile_prefix: external file prefix not pinned");
if ((retVal = H5Pset_efile_prefix((hid_t)dapl_id, extFilePrefix)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (extFilePrefix)
UNPIN_JAVA_STRING(ENVONLY, prefix, extFilePrefix);
} /* end Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_efile_prefix
* Signature: (J)Ljava/lang/String;
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
(JNIEnv *env, jclass clss, jlong dapl_id)
{
ssize_t prefix_size = -1;
char *pre = NULL;
jstring str = NULL;
UNUSED(clss);
if ((prefix_size = H5Pget_efile_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t)prefix_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: memory allocation failed");
if (H5Pget_efile_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0)
H5_LIBRARY_ERROR(ENVONLY);
pre[(size_t)prefix_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: out of memory - unable to construct string from UTF characters");
}
done:
if (pre)
HDfree(pre);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_append_flush
* Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
(JNIEnv *env, jclass clss, jlong plist_id, jint ndims, jlongArray boundary, jobject callback_op, jobject op_data)
{
cb_wrapper wrapper = { callback_op, op_data };
herr_t status = FAIL;
UNUSED(clss);
ENVPTR->GetJavaVM(ENVONLY, &jvm);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == op_data)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_append_flush: op_data is NULL");
if (NULL == callback_op)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_append_flush: callback_op is NULL");
if ((status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t *)boundary, (H5D_append_cb_t)H5D_append_cb, (void *)&wrapper)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1append_1flush */
/*
* TODO: H5Pget_append_flush
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_virtual_view
* Signature: (JI)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
(JNIEnv *env, jclass clss, jlong dapl_id, jint view)
{
UNUSED(clss);
if (H5Pset_virtual_view((hid_t)dapl_id, (H5D_vds_view_t)view) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_view
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
(JNIEnv *env, jclass clss, jlong dapl_id)
{
H5D_vds_view_t virtual_view = H5D_VDS_ERROR;
UNUSED(clss);
if (H5Pget_virtual_view((hid_t)dapl_id, &virtual_view) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)virtual_view;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_virtual_printf_gap
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
(JNIEnv *env, jclass clss, jlong dapl_id, jlong gap_size)
{
UNUSED(clss);
if (H5Pset_virtual_printf_gap((hid_t)dapl_id, (hsize_t)gap_size) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_printf_gap
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
(JNIEnv *env, jclass clss, jlong dapl_id)
{
hsize_t gap_size = 0;
UNUSED(clss);
if (H5Pget_virtual_printf_gap((hid_t)dapl_id, &gap_size) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)gap_size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap */
static herr_t
H5D_append_cb
(hid_t dataset_id, hsize_t *cur_dims, void *cb_data)
{
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
jlongArray cur_dimsArray;
jmethodID mid;
jobject visit_callback = wrapper->visit_callback;
jclass cls;
JNIEnv *cbenv = NULL;
void *op_data = (void *)wrapper->op_data;
jint status = -1;
if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(CBENVONLY, "H5D_append_cb: failed to attach current thread to JVM");
}
if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(J[JLhdf/hdf5lib/callbacks/H5D_append_t;)I")))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
if (NULL != cur_dims) {
if (NULL == (cur_dimsArray = CBENVPTR->NewLongArray(CBENVONLY, 2)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
CBENVPTR->SetLongArrayRegion(CBENVONLY, cur_dimsArray, 0, 2, (const jlong *)cur_dims);
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, dataset_id, cur_dims, op_data);
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
}
done:
if (CBENVONLY)
JVMPTR->DetachCurrentThread(JVMPAR);
return (herr_t)status;
} /* end H5D_append_cb */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

112
java/src/jni/h5pDAPLImp.h Normal file
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PDAPL
#define _Included_hdf_hdf5lib_H5_H5PDAPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_chunk_cache
* Signature: (JJJD)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache
(JNIEnv *, jclass, jlong, jlong, jlong, jdouble);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_chunk_cache
* Signature: (J[J[J[D)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache
(JNIEnv *, jclass, jlong, jlongArray, jlongArray, jdoubleArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_efile_prefix
* Signature: (JLjava/lang/String;)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix
(JNIEnv *, jclass, jlong, jstring);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_efile_prefix
* Signature: (J)Ljava/lang/String;
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_append_flush
* Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
(JNIEnv*, jclass, jlong, jint, jlongArray, jobject, jobject);
/*
* TODO: H5Pget_append_flush
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_virtual_view
* Signature: (JI)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_view
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_virtual_printf_gap
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_printf_gap
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap
(JNIEnv *, jclass, jlong);
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PDAPL */

1404
java/src/jni/h5pDCPLImp.c Normal file
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java/src/jni/h5pDCPLImp.h Normal file
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PDCPL
#define _Included_hdf_hdf5lib_H5_H5PDCPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_layout
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1layout
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_layout
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1layout
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_chunk
* Signature: (JI[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1chunk
(JNIEnv *, jclass, jlong, jint, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_chunk
* Signature: (JI[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1chunk
(JNIEnv *, jclass, jlong, jint, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_chunk_opts
* Signature: (JI)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_chunk_opts
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_dset_no_attrs_hint
* Signature: (JZ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint
(JNIEnv *, jclass, jlong, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_dset_no_attrs_hint
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_deflate
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1deflate
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fill_value
* Signature: (JJ[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fill_1value
(JNIEnv *, jclass, jlong, jlong, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_fill_value
* Signature: (JJ[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1fill_1value
(JNIEnv *, jclass, jlong, jlong, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pfill_value_defined
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined
(JNIEnv *, jclass, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fill_time
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fill_1time
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_fill_time
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1fill_1time
(JNIEnv *, jclass, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_alloc_time
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_alloc_time
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time
(JNIEnv *, jclass, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_filter
* Signature: (JIIJ[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1filter
(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pall_filters_avail
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_nfilters
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1nfilters
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_filter
* Signature: (JI[I[J[IJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1filter
(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_filter2
* Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1filter2
(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_filter_by_id
* Signature: (JI[I[J[IJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id
(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_filter_by_id2
* Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2
(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pmodify_filter
* Signature: (JIIJ[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pmodify_1filter
(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Premove_filter
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5P1remove_1filter
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fletcher32
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fletcher32
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_nbit
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1nbit
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_scaleoffset
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shuffle
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shuffle
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_szip
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1szip
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_external
* Signature: (JLjava/lang/String;JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1external
(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_external
* Signature: (JIJ[Ljava/lang/String;[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1external
(JNIEnv *, jclass, jlong, jint, jlong, jobjectArray, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_external_count
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1external_1count
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_virtual
* Signature: (JJLjava/lang/String;Ljava/lang/String;J)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1virtual
(JNIEnv *, jclass, jlong, jlong, jstring, jstring, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_count
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_dsetname
* Signature: (JJ)Ljava/lang/String;
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_filename
* Signature: (JJ)Ljava/lang/String;
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_srcspace
* Signature: (JJ)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_vspace
* Signature: (JJ)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_virtual_prefix
* Signature: (JLjava/lang/String;)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix
(JNIEnv *, jclass, jlong, jstring);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_virtual_prefix
* Signature: (J)Ljava/lang/String;
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix
(JNIEnv *, jclass, jlong);
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PDCPL */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pDXPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_buffer
* Signature: (JJ[B[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1buffer
(JNIEnv *env, jclass clss, jlong plist, jlong size, jbyteArray tconv, jbyteArray bkg)
{
#ifdef notdef
jboolean isCopy;
jbyte *tconvP = NULL;
jbyte *bkgP = NULL;
#endif
herr_t status = FAIL;
UNUSED(clss);
#ifndef notdef
UNUSED(plist);
UNUSED(size);
UNUSED(tconv);
UNUSED(bkg);
#endif
H5_UNIMPLEMENTED(ENVONLY, "H5Pset_buffer: not implemented");
/* NOTE: DON'T IMPLEMENT THIS!!! */
#ifdef notdef
if (NULL != tconv)
PIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, &isCopy, "H5Pset_buffer: tconv not pinned");
if (NULL != bkg)
PIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, &isCopy, "H5Pset_buffer: bkg not pinned");
if ((status = H5Pset_buffer((hid_t)plist, (size_t)size, tconvP, bkgP)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
#endif
done:
#ifdef notdef
if (bkgP)
UNPIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, (status < 0) ? JNI_ABORT : 0);
if (tconvP)
UNPIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, (status < 0) ? JNI_ABORT : 0);
#endif
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_buffer
* Signature: (J[B[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1buffer
(JNIEnv *env, jclass clss, jlong plist, jbyteArray tconv, jbyteArray bkg)
{
#ifdef notdef
jboolean isCopy;
jbyte *tconvP = NULL;
jbyte *bkgP = NULL;
#endif
herr_t status = FAIL;
UNUSED(clss);
#ifndef notdef
UNUSED(plist);
UNUSED(tconv);
UNUSED(bkg);
#endif
H5_UNIMPLEMENTED(ENVONLY, "H5Pget_buffer: not implemented");
/* NOTE: DON'T IMPLEMENT THIS!!! */
#ifdef notdef
if (NULL == tconv)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_buffer: tconv input array is NULL");
if (NULL == bkg)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_buffer: bkg array is NULL");
PIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, &isCopy, "H5Pget_buffer: tconv not pinned");
PIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, &isCopy, "H5Pget_buffer: bkg not pinned");
if ((status = H5Pget_buffer((hid_t)plist, tconvP, bkgP)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
#endif
done:
#ifdef notdef
if (bkgP)
UNPIN_BYTE_ARRAY(ENVONLY, bkg, bkgP, (status < 0) ? JNI_ABORT : 0);
if (tconvP)
UNPIN_BYTE_ARRAY(ENVONLY, tconv, tconvP, (status < 0) ? JNI_ABORT : 0);
#endif
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_buffer_size
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
(JNIEnv *env, jclass clss, jlong plist, jlong size)
{
UNUSED(clss);
if (H5Pset_buffer((hid_t)plist, (size_t)size, NULL, NULL) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_buffer_size
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
(JNIEnv *env, jclass clss, jlong plist)
{
size_t size = 0;
UNUSED(clss);
if (!(size = H5Pget_buffer((hid_t)plist, NULL, NULL)))
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_preserve
* Signature: (JZ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1preserve
(JNIEnv *env, jclass clss, jlong plist, jboolean status)
{
hbool_t st = JNI_FALSE;
herr_t retVal = FAIL;
UNUSED(clss);
if (JNI_TRUE == status)
st = TRUE;
else if (JNI_FALSE == status)
st = false;
else
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_preserve: status not TRUE or FALSE");
if ((retVal = H5Pset_preserve((hid_t)plist, st)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1preserve */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_preserve
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1preserve
(JNIEnv *env, jclass clss, jlong plist)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pget_preserve((hid_t)plist)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1preserve */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_edc_check
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
(JNIEnv *env, jclass clss, jlong plist, jint check)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_edc_check((hid_t)plist, (H5Z_EDC_t)check)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1edc_1check */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_edc_check
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
(JNIEnv *env, jclass clss, jlong plist)
{
H5Z_EDC_t retVal = -1;
UNUSED(clss);
if ((retVal = H5Pget_edc_check((hid_t)plist)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1edc_1check */
/*
* TODO: H5Pset_filter_callback
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_data_transform
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
(JNIEnv *env, jclass clss, jlong plist_id, jstring expression)
{
const char *express = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
PIN_JAVA_STRING(ENVONLY, expression, express, NULL, "H5Pset_data_transform: data transform expression not pinned");
if ((retVal = H5Pset_data_transform((hid_t)plist_id, express)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (express)
UNPIN_JAVA_STRING(ENVONLY, expression, express);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1data_1transform */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_data_transform
* Signature: (J[Ljava/lang/String;J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
(JNIEnv *env, jclass clss, jlong plist_id, jobjectArray expression, jlong size)
{
jstring str = NULL;
char *express = NULL;
ssize_t express_size = -1;
UNUSED(clss);
if (size <= 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_data_transform: size <= 0");
if ((express_size = H5Pget_data_transform((hid_t)plist_id, (char *)NULL, (size_t)size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (express = (char *) HDmalloc(sizeof(char) * (size_t)express_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: memory allocation failed");
if (H5Pget_data_transform((hid_t)plist_id, express, (size_t)express_size + 1) < 0)
H5_LIBRARY_ERROR(ENVONLY);
express[express_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, express))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: out of memory - unable to construct string from UTF characters");
}
ENVPTR->SetObjectArrayElement(ENVONLY, expression, 0, str);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (express)
HDfree(express);
return (jlong)express_size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1data_1transform */
/*
* TODO: H5Pset_type_conv_cb
*/
/*
* TODO: H5Pget_type_conv_cb
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_hyper_vector_size
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
(JNIEnv *env, jclass clss, jlong plist, jlong vector_size)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_hyper_vector_size((hid_t)plist, (size_t)vector_size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_hyper_vector_size
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
(JNIEnv *env, jclass clss, jlong plist, jlongArray vector_size)
{
jboolean isCopy;
size_t size;
jlong *theArray = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
if (NULL == vector_size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_hyper_vector_size: vector_size is NULL");
PIN_LONG_ARRAY(ENVONLY, vector_size, theArray, &isCopy, "H5Pget_hyper_vector_size: vector_size not pinned");
if ((retVal = H5Pget_hyper_vector_size((hid_t)plist, &size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
theArray[0] = (jlong)size;
done:
if (theArray)
UNPIN_LONG_ARRAY(ENVONLY, vector_size, theArray, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_btree_ratios
* Signature: (JDDD)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
(JNIEnv *env, jclass clss, jlong plist_id, jdouble left, jdouble middle, jdouble right)
{
herr_t status = FAIL;
UNUSED(clss);
if ((status = H5Pset_btree_ratios((hid_t)plist_id, (double)left,(double)middle, (double)right)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_btree_ratios
* Signature: (J[D[D[D)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
(JNIEnv *env, jclass clss, jlong plist_id, jdoubleArray left,
jdoubleArray middle, jdoubleArray right)
{
jboolean isCopy;
jdouble *leftP = NULL;
jdouble *middleP = NULL;
jdouble *rightP = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == left)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: left input array is NULL");
if (NULL == middle)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: middle input array is NULL");
if (NULL == right)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_btree_ratios: right input array is NULL");
PIN_DOUBLE_ARRAY(ENVONLY, left, leftP, &isCopy, "H5Pget_btree_ratios: left array not pinned");
PIN_DOUBLE_ARRAY(ENVONLY, middle, middleP, &isCopy, "H5Pget_btree_ratios: middle array not pinned");
PIN_DOUBLE_ARRAY(ENVONLY, right, rightP, &isCopy, "H5Pget_btree_ratios: right array not pinned");
if ((status = H5Pget_btree_ratios((hid_t)plist_id, (double *)leftP,
(double *)middleP, (double *)rightP)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (rightP)
UNPIN_DOUBLE_ARRAY(ENVONLY, right, rightP, (status < 0) ? JNI_ABORT : 0);
if (middleP)
UNPIN_DOUBLE_ARRAY(ENVONLY, middle, middleP, (status < 0) ? JNI_ABORT : 0);
if (leftP)
UNPIN_DOUBLE_ARRAY(ENVONLY, left, leftP, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios */
/*
* TODO: H5Pset_vlen_mem_manager
*/
/*
* TODO: H5Pget_vlen_mem_manager
*/
/*
* TODO: H5Pset_dxpl_mpio
*/
/*
* TODO: H5Pget_dxpl_mpio
*/
/*
* TODO: H5Pset_dxpl_mpio_chunk_opt
*/
/*
* TODO: H5Pset_dxpl_mpio_chunk_opt_num
*/
/*
* TODO: H5Pset_dxpl_mpio_chunk_opt_ratio
*/
/*
* TODO: H5Pset_dxpl_mpio_collective_opt
*/
/*
* TODO: H5Pget_mpio_actual_chunk_opt_mode
*/
/*
* TODO: H5Pget_mpio_actual_io_mode
*/
/*
* TODO: H5Pget_mpio_no_collective_cause
*/
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PDXPL
#define _Included_hdf_hdf5lib_H5_H5PDXPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_buffer
* Signature: (JJ[B[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1buffer
(JNIEnv *, jclass, jlong, jlong, jbyteArray, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_buffer
* Signature: (J[B[B)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1buffer
(JNIEnv *, jclass, jlong, jbyteArray, jbyteArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_buffer_size
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_buffer_size
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_preserve
* Signature: (JZ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1preserve
(JNIEnv *, jclass, jlong, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_preserve
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1preserve
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_edc_check
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1edc_1check
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_edc_check
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1edc_1check
(JNIEnv *, jclass, jlong);
/*
* TODO: H5Pset_filter_callback
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_data_transform
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1data_1transform
(JNIEnv *, jclass, jlong, jstring);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_data_transform
* Signature: (J[Ljava/lang/String;J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1data_1transform
(JNIEnv *, jclass, jlong, jobjectArray, jlong);
/*
* TODO: H5Pset_type_conv_cb
*/
/*
* TODO: H5Pget_type_conv_cb
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_hyper_vector_size
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_hyper_vector_size
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size
(JNIEnv *, jclass, jlong, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_btree_ratios
* Signature: (JDDD)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios
(JNIEnv *, jclass, jlong, jdouble, jdouble, jdouble);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_btree_ratios
* Signature: (J[D[D[D)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios
(JNIEnv *, jclass, jlong, jdoubleArray, jdoubleArray, jdoubleArray);
/*
* TODO: H5Pset_vlen_mem_manager
*/
/*
* TODO: H5Pget_vlen_mem_manager
*/
/*
* TODO: H5Pset_dxpl_mpio
*/
/*
* TODO: H5Pget_dxpl_mpio
*/
/*
* TODO: H5Pset_dxpl_mpio_chunk_opt
*/
/*
* TODO: H5Pset_dxpl_mpio_chunk_opt_num
*/
/*
* TODO: H5Pset_dxpl_mpio_chunk_opt_ratio
*/
/*
* TODO: H5Pset_dxpl_mpio_collective_opt
*/
/*
* TODO: H5Pget_mpio_actual_chunk_opt_mode
*/
/*
* TODO: H5Pget_mpio_actual_io_mode
*/
/*
* TODO: H5Pget_mpio_no_collective_cause
*/
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PDXPL */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PFAPL
#define _Included_hdf_hdf5lib_H5_H5PFAPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* TODO: H5Pset_driver
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_driver
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1driver
(JNIEnv *, jclass, jlong);
/*
* TODO: H5Pget_driver_info
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fclose_degree
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_fclose_degree
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_core
* Signature: (JJZ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core
(JNIEnv *, jclass, jlong, jlong, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_fapl_core
* Signature: (J[J[Z)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core
(JNIEnv *, jclass, jlong, jlongArray, jbooleanArray);
/*
* TODO: H5Pset_core_write_tracking
*/
/*
* TODO: H5Pget_core_write_tracking
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_direct
* Signature: (JJJJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct
(JNIEnv *, jclass, jlong, jlong, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_fapl_direct
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct
(JNIEnv *, jclass, jlong, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_family
* Signature: (JJJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family
(JNIEnv *, jclass, jlong, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_fapl_family
* Signature: (J[J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family
(JNIEnv *, jclass, jlong, jlongArray, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_family_offset
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1family_1offset
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_family_offset
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1family_1offset
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_log
* Signature: (JLjava/lang/String;JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log
(JNIEnv *, jclass, jlong, jstring, jlong, jlong);
/*
* TODO: H5Pset_fapl_mpio
*/
/*
* TODO: H5Pget_fapl_mpio
*/
/*
* TODO: H5Pset_fapl_mpiposix
*/
/*
* TODO: H5Pget_fapl_mpiposix
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_multi
* Signature: (J[I[J[Ljava/lang/String;[JZ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi
(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_fapl_multi
* Signature: (J[I[J[Ljava/lang/String;[J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi
(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray);
/*
* TODO: H5Pset_multi_type
*/
/*
* TODO: H5Pget_multi_type
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_split
* Signature: (JLjava/lang/String;JLjava/lang/String;J)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split
(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_sec2
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_stdio
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_fapl_windows
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows
(JNIEnv *, jclass, jlong);
/*
* TODO: H5Pset_file_image
*/
/*
* TODO: H5Pget_file_image
*/
/*
* TODO: H5Pset_file_image_callbacks
*/
/*
* TODO: H5Pget_file_image_callbacks
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_meta_block_size
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_meta_block_size
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size
(JNIEnv *, jclass, jlong);
/*
* TODO: H5Pset_page_buffer_size
*/
/*
* TODO: H5Pget_page_buffer_size
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_sieve_buf_size
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_sieve_buf_size
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_alignment
* Signature: (JJJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1alignment
(JNIEnv *, jclass, jlong, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_alignment
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1alignment
(JNIEnv *, jclass, jlong, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_cache
* Signature: (JIJJD)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1cache
(JNIEnv *, jclass, jlong, jint, jlong, jlong, jdouble);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_cache
* Signature: (J[I[J[J[D)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1cache
(JNIEnv *, jclass, jlong, jintArray, jlongArray, jlongArray, jdoubleArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_elink_file_cache_size
* Signature: (JI)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_elink_file_cache_size
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_evict_on_close
* Signature: (JZ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close
(JNIEnv *, jclass, jlong, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_evict_on_close
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_metadata_read_attempts
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_metadata_read_attempts
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_mdc_config
* Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config
(JNIEnv *, jclass, jlong, jobject);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_mdc_config
* Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t;
*/
JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config
(JNIEnv *, jclass, jlong);
/*
* TODO: H5Pset_mdc_image_config
*/
/*
* TODO: H5Pget_mdc_image_config
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_mdc_log_options
* Signature: (JZLjava/lang/String;Z)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
(JNIEnv *, jclass, jlong, jboolean, jstring, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_mdc_log_options
* Signature: (J[Z)Ljava/lang/String;
*/
JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
(JNIEnv *, jclass, jlong, jbooleanArray);
/*
* TODO: H5Pset_all_coll_metadata_ops
*/
/*
* TODO: H5Pget_all_coll_metadata_ops
*/
/*
* TODO: H5Pset_coll_metadata_write
*/
/*
* TODO: H5Pget_coll_metadata_write
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_gc_references
* Signature: (JZ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1gc_1references
(JNIEnv *, jclass, jlong, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_gc_references
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1gc_1references
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_small_data_block_size
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_small_data_block_size
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_libver_bounds
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_libver_bounds
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds
(JNIEnv *, jclass, jlong, jintArray);
/*
* TODO: H5Pset_object_flush_cb
*/
/*
* TODO: H5Pget_object_flush_cb
*/
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PFAPL */

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java/src/jni/h5pFCPLImp.c Normal file
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@ -0,0 +1,572 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pFCPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_userblock
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1userblock
(JNIEnv *env, jclass clss, jlong plist, jlong size)
{
long sz = (long) size;
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_userblock((hid_t)plist, (hsize_t)sz)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1userblock */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_userblock
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1userblock
(JNIEnv *env, jclass clss, jlong plist, jlongArray size)
{
jboolean isCopy;
hsize_t s;
jlong *theArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_userblock: size is NULL");
PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_userblock: size not pinned");
if ((status = H5Pget_userblock((hid_t)plist, &s)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
theArray[0] = (jlong)s;
done:
if (theArray)
UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1userblock */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_sizes
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1sizes
(JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_sizes((hid_t)plist, (size_t)sizeof_addr, (size_t)sizeof_size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1sizes */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_sizes
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1sizes
(JNIEnv *env, jclass clss, jlong plist, jlongArray size)
{
jboolean isCopy;
jlong *theArray = NULL;
jsize arrLen;
size_t ss;
size_t sa;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size is NULL");
if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size array length < 0");
}
if (arrLen < 2)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sizes: size input array < 2 elements");
PIN_LONG_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sizes: size not pinned");
if ((status = H5Pget_sizes((hid_t)plist, &sa, &ss)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
theArray[0] = (jlong)sa;
theArray[1] = (jlong)ss;
done:
if (theArray)
UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1sizes */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_sym_k
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
(JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_sym_k((hid_t)plist, (unsigned)ik, (unsigned)lk)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1sym_1k */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_sym_k
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
(JNIEnv *env, jclass clss, jlong plist, jintArray size)
{
jboolean isCopy;
jsize arrLen;
jint *theArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size is NULL");
if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size array length < 0");
}
if (arrLen < 2)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_sym_k: size < 2 elements");
PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_sym_k: size not pinned");
if ((status = H5Pget_sym_k((hid_t)plist, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_LONG_ARRAY(ENVONLY, size, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1sym_1k */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_istore_k
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
(JNIEnv *env, jclass clss, jlong plist, jint ik)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_istore_k((hid_t)plist, (unsigned)ik)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1istore_1k */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_istore_k
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
(JNIEnv *env, jclass clss, jlong plist, jintArray ik)
{
jboolean isCopy;
jint *theArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (NULL == ik)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_store_k: ik is NULL");
PIN_INT_ARRAY(ENVONLY, ik, theArray, &isCopy, "H5Pget_store_k: size not pinned");
if ((status = H5Pget_istore_k((hid_t)plist, (unsigned *)&(theArray[0]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, ik, theArray, (status < 0) ? JNI_ABORT : 0);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1istore_1k */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_file_space_page_size
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
(JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size)
{
UNUSED(clss);
if (H5Pset_file_space_page_size((hid_t)fcpl_id, (hsize_t)fsp_size) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_page_size
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
(JNIEnv *env, jclass clss, jlong fcpl_id)
{
hsize_t fsp_size = 0;
UNUSED(clss);
if (H5Pget_file_space_page_size((hid_t)fcpl_id, &fsp_size) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)fsp_size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_file_space_strategy
* Signature: (JIZJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
(JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, jboolean persist, jlong threshold)
{
UNUSED(clss);
if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist, (hsize_t)threshold) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_file_space_strategy */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy
* Signature: (J[Z[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
(JNIEnv *env, jclass clss, jlong fcpl_id, jbooleanArray persist, jlongArray threshold)
{
H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */
jboolean isCopy;
jboolean *persistArray = NULL;
jlong *thresholdArray = NULL;
herr_t status = FAIL;
UNUSED(clss);
if (persist)
PIN_BOOL_ARRAY(ENVONLY, persist, persistArray, &isCopy, "H5Pget_file_space: persist not pinned");
if (threshold)
PIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, &isCopy, "H5Pget_file_space: threshold not pinned");
if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t *)persistArray, (hsize_t *)thresholdArray)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (thresholdArray)
UNPIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, (status < 0) ? JNI_ABORT : 0);
if (persistArray)
UNPIN_BOOL_ARRAY(ENVONLY, persist, persistArray, (status < 0) ? JNI_ABORT : 0);
return (jint)thestrategy;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy_persist
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
(JNIEnv *env, jclass clss, jlong fcpl_id)
{
hbool_t persist = FALSE;
herr_t status = FAIL;
UNUSED(clss);
if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, &persist, NULL)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jboolean)persist;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy_threshold
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
(JNIEnv *env, jclass clss, jlong fcpl_id)
{
hsize_t threshold = 0;
herr_t status = FAIL;
UNUSED(clss);
if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, NULL, NULL, &threshold)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)threshold;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1threshold */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_nindexes
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
(JNIEnv *env, jclass clss, jlong plist_id, jint nindexes)
{
herr_t retVal = FAIL;
UNUSED(clss);
if (nindexes > H5O_SHMESG_MAX_NINDEXES)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES");
if ((retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_nindexes
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
(JNIEnv *env, jclass clss, jlong fcpl_id)
{
unsigned nindexes;
UNUSED(clss);
if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)nindexes;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_index
* Signature: (JIII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num,
jint mesg_type_flags, jint min_mesg_size)
{
unsigned nindexes; /* Number of SOHM indexes */
herr_t retVal = FAIL;
UNUSED(clss);
/* Check arguments */
if ((unsigned) mesg_type_flags > H5O_SHMESG_ALL_FLAG)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags");
/* Read the current number of indexes */
if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Range check */
if ((unsigned) index_num >= nindexes)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: index_num is too large; no such index");
if ((retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned) mesg_type_flags, (unsigned) min_mesg_size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_index
* Signature: (JI[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jintArray mesg_info)
{
jboolean isCopy;
unsigned nindexes; /* Number of SOHM indexes */
jint *theArray = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
if (NULL == mesg_info)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: mesg_info is NULL");
/* Read the current number of indexes */
if (H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Range check */
if ((unsigned) index_num >= nindexes)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: index_num is too large; no such index");
PIN_INT_ARRAY(ENVONLY, mesg_info, theArray, &isCopy, "H5Pget_shared_mesg_index: input not pinned");
if ((retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, mesg_info, theArray, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_phase_change
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
(JNIEnv *env, jclass clss, jlong fcpl_id, jint max_list, jint min_btree)
{
herr_t retVal = FAIL;
UNUSED(clss);
/* Check that values are sensible. The min_btree value must be no greater
* than the max list plus one.
*
* Range check to make certain they will fit into encoded form.
*/
if (max_list + 1 < min_btree)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value");
if (max_list > H5O_SHMESG_MAX_LIST_SIZE)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE");
if (min_btree > H5O_SHMESG_MAX_LIST_SIZE)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE");
if ((retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_phase_change
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
(JNIEnv *env, jclass clss, jlong fcpl_id, jintArray size)
{
jboolean isCopy;
jint *theArray = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
if (NULL == size)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_phase_change: size is NULL");
PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_shared_mesg_phase_change: input not pinned");
if ((retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, size, theArray, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PFCPL
#define _Included_hdf_hdf5lib_H5_H5PFCPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_userblock
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1userblock
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_userblock
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1userblock
(JNIEnv *, jclass, jlong, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_sizes
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1sizes
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_sizes
* Signature: (J[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1sizes
(JNIEnv *, jclass, jlong, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_sym_k
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1sym_1k
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_sym_k
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1sym_1k
(JNIEnv *, jclass, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_istore_k
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1istore_1k
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_istore_k
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1istore_1k
(JNIEnv *, jclass, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_file_space_page_size
* Signature: (JJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_page_size
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_file_space_strategy
* Signature: (JIZJ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy
(JNIEnv *, jclass, jlong, jint, jboolean, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy
* Signature: (J[Z[J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy
(JNIEnv *, jclass, jlong, jbooleanArray, jlongArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy_persist
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_file_space_strategy_threshold
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_nindexes
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_nindexes
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_index
* Signature: (JIII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index
(JNIEnv *, jclass, jlong, jint, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_index
* Signature: (JI[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index
(JNIEnv *, jclass, jlong, jint, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_shared_mesg_phase_change
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_shared_mesg_phase_change
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change
(JNIEnv *, jclass, jlong, jintArray);
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PFCPL */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pGAPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PGAPL
#define _Included_hdf_hdf5lib_H5_H5PGAPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PGAPL */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pGCPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_local_heap_size_hint
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
(JNIEnv *env, jclass clss, jlong gcpl_id, jlong size_hint)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_local_heap_size_hint((hid_t)gcpl_id, (size_t)size_hint)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_local_heap_size_hint
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
(JNIEnv *env, jclass clss, jlong gcpl_id)
{
size_t size_hint = 0;
UNUSED(clss);
if (H5Pget_local_heap_size_hint((hid_t)gcpl_id, &size_hint) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)size_hint;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_link_creation_order
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
(JNIEnv *env, jclass clss, jlong gcpl_id, jint crt_order_flags)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_link_creation_order((hid_t)gcpl_id, (unsigned)crt_order_flags)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_link_creation_order
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
(JNIEnv *env, jclass clss, jlong gcpl_id)
{
unsigned crt_order_flags;
UNUSED(clss);
if (H5Pget_link_creation_order((hid_t)gcpl_id, &crt_order_flags) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)crt_order_flags;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_est_link_info
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
(JNIEnv *env, jclass clss, jlong gcpl_id, jint est_num_entries, jint est_name_len)
{
herr_t retVal = FAIL;
UNUSED(clss);
/* Range check values */
if ((est_num_entries > 65535) || (est_name_len > 65535))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_est_link_info: est. name length or number of entries must be < 65536");
if ((retVal = H5Pset_est_link_info((hid_t)gcpl_id, (unsigned)est_num_entries, (unsigned)est_name_len)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_est_link_info
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
(JNIEnv *env, jclass clss, jlong gcpl_id, jintArray link_info)
{
jboolean isCopy;
jint *theArray = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
if (NULL == link_info)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_est_link_info: link_info is NULL");
PIN_INT_ARRAY(ENVONLY, link_info, theArray, &isCopy, "H5Pget_est_link_info: input not pinned");
if ((retVal = H5Pget_est_link_info((hid_t)gcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, link_info, theArray, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_link_phase_change
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
(JNIEnv *env, jclass clss, jlong gcpl_id, jint max_compact, jint min_dense)
{
herr_t retVal = FAIL;
UNUSED(clss);
if (max_compact < min_dense)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: max compact value must be >= min dense value");
if (max_compact > 65535)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: max compact value must be < 65536");
if (min_dense > 65535)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: min dense value must be < 65536");
if ((retVal = H5Pset_link_phase_change((hid_t)gcpl_id, (unsigned)max_compact, (unsigned)min_dense)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_link_phase_change
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
(JNIEnv *env, jclass clss, jlong gcpl_id, jintArray links)
{
jboolean isCopy;
jint *theArray = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
if (NULL == links)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_link_phase_change: links is NULL");
PIN_INT_ARRAY(ENVONLY, links, theArray, &isCopy, "H5Pget_link_phase_change: input not pinned");
if ((retVal = H5Pget_link_phase_change((hid_t)gcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, links, theArray, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PGCPL
#define _Included_hdf_hdf5lib_H5_H5PGCPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_local_heap_size_hint
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_local_heap_size_hint
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_link_creation_order
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_link_creation_order
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_est_link_info
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_est_link_info
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info
(JNIEnv *, jclass, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_link_phase_change
* Signature: (JII)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_link_phase_change
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change
(JNIEnv *, jclass, jlong, jintArray);
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PGCPL */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pLAPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_nlinks
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1nlinks
(JNIEnv *env, jclass clss, jlong lapl_id, jlong nlinks)
{
herr_t retVal = FAIL;
UNUSED(clss);
if (nlinks <= 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_nlinks: nlinks <= 0");
if ((retVal = H5Pset_nlinks((hid_t)lapl_id, (size_t)nlinks)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1nlinks */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_nlinks
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1nlinks
(JNIEnv *env, jclass clss, jlong lapl_id)
{
size_t nlinks = 0;
UNUSED(clss);
if (H5Pget_nlinks((hid_t)lapl_id, &nlinks) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong) nlinks;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1nlinks */
/*
* TODO: H5Pset_elink_cb
*/
/*
* TODO: H5Pget_elink_cb
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_elink_prefix
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
(JNIEnv *env, jclass clss, jlong lapl_id, jstring prefix)
{
const char *linkPrefix = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
PIN_JAVA_STRING(ENVONLY, prefix, linkPrefix, NULL, "H5Pset_elink_prefix: link prefix not pinned");
if ((retVal = H5Pset_elink_prefix((hid_t)lapl_id, linkPrefix)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (linkPrefix)
UNPIN_JAVA_STRING(ENVONLY, prefix, linkPrefix);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_elink_prefix
* Signature: (J[Ljava/lang/String;)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
(JNIEnv *env, jclass clss, jlong lapl_id, jobjectArray prefix)
{
ssize_t prefix_size = -1;
size_t size = 0;
char *pre = NULL;
jstring str = NULL;
UNUSED(clss);
if (NULL == prefix)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_elink_prefix: prefix is NULL");
if ((prefix_size = H5Pget_elink_prefix((hid_t)lapl_id, (char *)NULL, size)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: memory allocation failed");
if (H5Pget_elink_prefix((hid_t)lapl_id, (char *)pre, (size_t) prefix_size + 1) < 0)
H5_LIBRARY_ERROR(ENVONLY);
pre[prefix_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: out of memory - unable to construct string from UTF characters");
}
ENVPTR->SetObjectArrayElement(ENVONLY, prefix, 0, str);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (pre)
HDfree(pre);
return (jlong)prefix_size;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_elink_fapl
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
(JNIEnv *env, jclass clss, jlong lapl_id, jlong fapl_id)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_elink_fapl((hid_t)lapl_id, (hid_t)fapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl */
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Pget_elink_fapl
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
(JNIEnv *env, jclass clss, jlong lapl_id)
{
hid_t retVal = H5I_INVALID_HID;
UNUSED(clss);
if ((retVal = H5Pget_elink_fapl((hid_t)lapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_elink_acc_flags
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
(JNIEnv *env, jclass clss, jlong lapl_id, jint flags)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_elink_acc_flags((hid_t)lapl_id, (unsigned)flags)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint) retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_elink_acc_flags
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
(JNIEnv *env, jclass clss, jlong lapl_id)
{
unsigned flags;
UNUSED(clss);
if (H5Pget_elink_acc_flags((hid_t)lapl_id, &flags) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)flags;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PLAPL
#define _Included_hdf_hdf5lib_H5_H5PLAPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_nlinks
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1nlinks
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_nlinks
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1nlinks
(JNIEnv *, jclass, jlong);
/*
* TODO: H5Pset_elink_cb
*/
/*
* TODO: H5Pget_elink_cb
*/
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_elink_prefix
* Signature: (JLjava/lang/String;)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix
(JNIEnv *, jclass, jlong, jstring);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_elink_prefix
* Signature: (J[Ljava/lang/String;)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix
(JNIEnv *, jclass, jlong, jobjectArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_elink_fapl
* Signature: (JJ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl
(JNIEnv *, jclass, jlong, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Pget_elink_fapl
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_elink_acc_flags
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_elink_acc_flags
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags
(JNIEnv *, jclass, jlong);
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PLAPL */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pLCPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PLCPL
#define _Included_hdf_hdf5lib_H5_H5PLCPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PLCPL */

211
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pOCPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_create_intermediate_group
* Signature: (JZ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
(JNIEnv *env, jclass clss, jlong lcpl_id, jboolean crt_intermed_group)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_create_intermediate_group((hid_t)lcpl_id, (unsigned)crt_intermed_group)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_create_intermediate_group
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
(JNIEnv *env, jclass clss, jlong lcpl_id)
{
unsigned crt_intermed_group = 0;
UNUSED(clss);
if (H5Pget_create_intermediate_group((hid_t)lcpl_id, &crt_intermed_group) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jboolean)crt_intermed_group;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_obj_track_times
* Signature: (JZ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
(JNIEnv *env, jclass clss, jlong objplid, jboolean track_times)
{
hbool_t track = FALSE;
UNUSED(clss);
track = (JNI_TRUE == track_times) ? 1 : 0;
if (H5Pset_obj_track_times((hid_t)objplid, track) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_obj_track_times
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
(JNIEnv *env, jclass clss, jlong objplid)
{
hbool_t track_times = FALSE;
jboolean retVal = JNI_FALSE;
UNUSED(clss);
if (H5Pget_obj_track_times((hid_t)objplid, &track_times) < 0)
H5_LIBRARY_ERROR(ENVONLY);
retVal = (track_times == TRUE) ? JNI_TRUE : JNI_FALSE;
done:
return retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_attr_phase_change
* Signature: (JII)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
(JNIEnv *env, jclass clss, jlong ocpl_id, jint max_compact, jint min_dense)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_attr_phase_change((hid_t)ocpl_id, (unsigned)max_compact, (unsigned)min_dense)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_attr_phase_change
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
(JNIEnv *env, jclass clss, jlong ocpl_id, jintArray attributes)
{
jboolean isCopy;
jint *theArray = NULL;
herr_t retVal = FAIL;
UNUSED(clss);
if (NULL == attributes)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_attr_phase_change: attributes is NULL");
PIN_INT_ARRAY(ENVONLY, attributes, theArray, &isCopy, "H5Pget_attr_phase_change: input not pinned");
if ((retVal = H5Pget_attr_phase_change((hid_t)ocpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (theArray)
UNPIN_INT_ARRAY(ENVONLY, attributes, theArray, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_attr_creation_order
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
(JNIEnv *env, jclass clss, jlong ocpl_id, jint crt_order_flags)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_attr_creation_order((hid_t)ocpl_id, (unsigned)crt_order_flags)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_attr_creation_order
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
(JNIEnv *env, jclass clss, jlong ocpl_id)
{
unsigned crt_order_flags = 0;
UNUSED(clss);
if (H5Pget_attr_creation_order((hid_t)ocpl_id, &crt_order_flags) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)crt_order_flags;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5POCPL
#define _Included_hdf_hdf5lib_H5_H5POCPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_create_intermediate_group
* Signature: (JZ)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group
(JNIEnv *, jclass, jlong, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_create_intermediate_group
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_obj_track_times
* Signature: (JZ)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times
(JNIEnv *, jclass, jlong, jboolean);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_obj_track_times
* Signature: (J)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times
(JNIEnv *, jclass, jlong);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_attr_phase_change
* Signature: (JII)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change
(JNIEnv *, jclass, jlong, jint, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_attr_phase_change
* Signature: (J[I)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change
(JNIEnv *, jclass, jlong, jintArray);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_attr_creation_order
* Signature: (JI)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_attr_creation_order
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order
(JNIEnv *, jclass, jlong);
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5POCPL */

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pOCpyPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_copy_object
* Signature: (JI)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
(JNIEnv *env, jclass clss, jlong ocp_plist_id, jint copy_options)
{
herr_t retVal = FAIL;
UNUSED(clss);
if ((retVal = H5Pset_copy_object((hid_t)ocp_plist_id, (unsigned)copy_options)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1copy_1object */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_copy_object
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
(JNIEnv *env, jclass clss, jlong ocp_plist_id)
{
unsigned copy_options = 0;
UNUSED(clss);
if (H5Pget_copy_object((hid_t)ocp_plist_id, &copy_options) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)copy_options;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1copy_1object */
/*
* TODO: H5Padd_merge_committed_dtype_path
*/
/*
* TODO: H5Pfree_merge_committed_dtype_paths
*/
/*
* TODO: H5Pset_mcdt_search_cb
*/
/*
* TODO: H5Pget_mcdt_search_cb
*/
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

61
java/src/jni/h5pOCpyPLImp.h Normal file
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@ -0,0 +1,61 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5POCpyPL
#define _Included_hdf_hdf5lib_H5_H5POCpyPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_copy_object
* Signature: (JI)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1copy_1object
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_copy_object
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1copy_1object
(JNIEnv *, jclass, jlong);
/*
* TODO: H5Padd_merge_committed_dtype_path
*/
/*
* TODO: H5Pfree_merge_committed_dtype_paths
*/
/*
* TODO: H5Pset_mcdt_search_cb
*/
/*
* TODO: H5Pget_mcdt_search_cb
*/
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5POCpyPL */

74
java/src/jni/h5pStrCPLImp.c Normal file
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@ -0,0 +1,74 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* For details of the HDF libraries, see the HDF Documentation at:
* http://hdfgroup.org/HDF5/doc/
*
*/
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5pStrCPLImp.h"
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_char_encoding
* Signature: (JI)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
(JNIEnv *env, jclass clss, jlong acpl, jint encoding)
{
UNUSED(clss);
if (H5Pset_char_encoding((hid_t)acpl, (H5T_cset_t)encoding) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_char_encoding
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
(JNIEnv *env, jclass clss, jlong acpl)
{
H5T_cset_t encoding = H5T_CSET_ERROR;
UNUSED(clss);
if (H5Pget_char_encoding((hid_t)acpl, &encoding) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return encoding;
} /* end Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding */
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */

45
java/src/jni/h5pStrCPLImp.h Normal file
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@ -0,0 +1,45 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef _Included_hdf_hdf5lib_H5_H5PStrCPL
#define _Included_hdf_hdf5lib_H5_H5PStrCPL
#include <jni.h>
#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pset_char_encoding
* Signature: (JI)V
*/
JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding
(JNIEnv *, jclass, jlong, jint);
/*
* Class: hdf_hdf5lib_H5
* Method: H5Pget_char_encoding
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding
(JNIEnv *, jclass, jlong);
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
#endif /* _Included_hdf_hdf5lib_H5_H5PStrCPL */

175
java/src/jni/h5plImp.c
View File

@ -26,7 +26,10 @@ extern "C" {
#include "h5jni.h"
#include "h5plImp.h"
extern JavaVM *jvm;
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@ -37,9 +40,13 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLset_1loading_1state
(JNIEnv *env, jclass clss, jint plugin_flags)
{
if (H5PLset_loading_state((unsigned int)plugin_flags) < 0) {
h5libraryError(env);
}
UNUSED(clss);
if (H5PLset_loading_state((unsigned int)plugin_flags) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5PLset_1loading_1state */
/*
@ -52,9 +59,13 @@ Java_hdf_hdf5lib_H5_H5PLget_1loading_1state
(JNIEnv *env, jclass clss)
{
unsigned int plugin_type = 0;
if (H5PLget_loading_state(&plugin_type) < 0) {
h5libraryError(env);
}
UNUSED(clss);
if (H5PLget_loading_state(&plugin_type) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)plugin_type;
} /* end Java_hdf_hdf5lib_H5_H5PLget_1loading_1state */
@ -67,18 +78,19 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLappend
(JNIEnv *env, jclass clss, jobjectArray plugin_path)
{
const char *aName;
herr_t retVal = -1;
const char *newPath = NULL;
herr_t retVal = FAIL;
PIN_JAVA_STRING(plugin_path, aName);
if (aName != NULL) {
retVal = H5PLappend(aName);
UNUSED(clss);
UNPIN_JAVA_STRING(plugin_path, aName);
PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLappend: new path not pinned");
if (retVal < 0)
h5libraryError(env);
}
if ((retVal = H5PLappend(newPath)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (newPath)
UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLappend */
/*
* Class: hdf_hdf5lib_H5
@ -89,18 +101,19 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLprepend
(JNIEnv *env, jclass clss, jobjectArray plugin_path)
{
const char *aName;
herr_t retVal = -1;
const char *newPath = NULL;
herr_t retVal = FAIL;
PIN_JAVA_STRING(plugin_path, aName);
if (aName != NULL) {
retVal = H5PLprepend(aName);
UNUSED(clss);
UNPIN_JAVA_STRING(plugin_path, aName);
PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLprepend: new path not pinned");
if (retVal < 0)
h5libraryError(env);
}
if ((retVal = H5PLprepend(newPath)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (newPath)
UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLprepend */
/*
@ -112,18 +125,22 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLreplace
(JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index)
{
const char *aName;
herr_t retVal = -1;
const char *newPath = NULL;
herr_t retVal = FAIL;
PIN_JAVA_STRING(plugin_path, aName);
if (aName != NULL) {
retVal = H5PLreplace(aName, index);
UNUSED(clss);
UNPIN_JAVA_STRING(plugin_path, aName);
if (index < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLreplace: index < 0");
if (retVal < 0)
h5libraryError(env);
}
PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLreplace: new path not pinned");
if ((retVal = H5PLreplace(newPath, (unsigned) index)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (newPath)
UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLreplace */
/*
@ -135,18 +152,22 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLinsert
(JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index)
{
const char *aName;
herr_t retVal = -1;
const char *newPath = NULL;
herr_t retVal = FAIL;
PIN_JAVA_STRING(plugin_path, aName);
if (aName != NULL) {
retVal = H5PLinsert(aName, index);
UNUSED(clss);
UNPIN_JAVA_STRING(plugin_path, aName);
if (index < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLinsert: index < 0");
if (retVal < 0)
h5libraryError(env);
}
PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLinsert: new path not pinned");
if ((retVal = H5PLinsert(newPath, (unsigned) index)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (newPath)
UNPIN_JAVA_STRING(ENVONLY, plugin_path, newPath);
} /* end Java_hdf_hdf5lib_H5_H5PLinsert */
/*
@ -158,8 +179,16 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5PLremove
(JNIEnv *env, jclass clss, jint index)
{
if (H5PLremove(index) < 0)
h5libraryError(env);
UNUSED(clss);
if (index < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLremove: index < 0");
if (H5PLremove((unsigned) index) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5PLremove */
/*
@ -171,33 +200,33 @@ JNIEXPORT jstring JNICALL
Java_hdf_hdf5lib_H5_H5PLget
(JNIEnv *env, jclass clss, jint index)
{
char *aName;
jstring str = NULL;
ssize_t buf_size;
char *aName = NULL;
/* get the length of the name */
buf_size = H5PLget(index, NULL, 0);
UNUSED(clss);
if (index < 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLget: index < 0");
/* Get the length of the name */
if ((buf_size = H5PLget((unsigned) index, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5PLget: failed to allocate plugin name buffer");
if ((H5PLget((unsigned) index, aName, (size_t)buf_size + 1)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
aName[buf_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (aName)
HDfree(aName);
if (buf_size <= 0) {
h5badArgument(env, "H5PLget: buf_size <= 0");
} /* end if */
else {
buf_size++; /* add extra space for the null terminator */
aName = (char*)HDmalloc(sizeof(char) * (size_t)buf_size);
if (aName == NULL) {
h5outOfMemory(env, "H5PLget: malloc failed");
} /* end if */
else {
buf_size = H5PLget(index, aName, (size_t)buf_size);
if (buf_size < 0) {
h5libraryError(env);
} /* end if */
else {
str = ENVPTR->NewStringUTF(ENVPAR aName);
}
HDfree(aName);
}
}
return str;
} /* end Java_hdf_hdf5lib_H5_H5PLget */
@ -211,9 +240,13 @@ Java_hdf_hdf5lib_H5_H5PLsize
(JNIEnv *env, jclass clss)
{
unsigned int listsize = 0;
if (H5PLsize(&listsize) < 0) {
h5libraryError(env);
}
UNUSED(clss);
if (H5PLsize(&listsize) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)listsize;
} /* end Java_hdf_hdf5lib_H5_H5PLsize */

363
java/src/jni/h5rImp.c
View File

@ -26,8 +26,10 @@ extern "C" {
#include "h5jni.h"
#include "h5rImp.h"
extern JavaVM *jvm;
/*
* Pointer to the JNI's Virtual Machine; used for callback functions.
*/
/* extern JavaVM *jvm; */
/*
* Class: hdf_hdf5lib_H5
@ -38,47 +40,42 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rcreate
(JNIEnv *env, jclass clss, jbyteArray ref, jlong loc_id, jstring name, jint ref_type, jlong space_id)
{
const char *rName;
herr_t status = -1;
jbyte *refP;
jboolean isCopy2;
const char *refName = NULL;
jboolean isCopy;
jbyte *refBuf = NULL;
jsize refBufLen;
herr_t status = FAIL;
PIN_JAVA_STRING(name, rName);
if (rName != NULL) {
if (ref == NULL) {
h5nullArgument( env, "H5Rcreate: ref is NULL");
} /* end if */
else {
if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
h5badArgument( env, "H5Rcreate: ref input array != H5R_OBJ_REF_BUF_SIZE");
} /* end if */
else if ((ref_type == H5R_DATASET_REGION) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
h5badArgument( env, "H5Rcreate: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
} /* end else if */
else if ((ref_type != H5R_OBJECT) && (ref_type != H5R_DATASET_REGION)) {
h5badArgument( env, "H5Rcreate: ref_type unknown type ");
} /* end else if */
else {
refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy2);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rcreate: ref not pinned");
} /* end if */
else {
status = H5Rcreate(refP, (hid_t)loc_id, rName, (H5R_type_t)ref_type, (hid_t)space_id);
UNUSED(clss);
if (status < 0) {
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
h5libraryError(env);
} /* end if */
else {
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, 0);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
UNPIN_JAVA_STRING(name, rName);
if (NULL == ref)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference is NULL");
if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: ref array length < 0");
}
if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference input array length != H5R_OBJ_REF_BUF_SIZE")
else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: unknown reference type");
PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate: reference name not pinned");
PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rcreate: reference buffer not pinned");
if ((status = H5Rcreate(refBuf, (hid_t)loc_id, refName, (H5R_type_t)ref_type, (hid_t)space_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (status < 0) ? JNI_ABORT : 0);
if (refName)
UNPIN_JAVA_STRING(ENVONLY, name, refName);
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Rcreate */
@ -91,33 +88,36 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rdereference
(JNIEnv *env, jclass clss, jlong dataset, jlong access_list, jint ref_type, jbyteArray ref)
{
jboolean isCopy;
jbyte *refP;
hid_t retVal = -1;
jboolean isCopy;
jbyte *refBuf = NULL;
jsize refBufLen;
hid_t retVal = H5I_INVALID_HID;
if (ref == NULL) {
h5nullArgument( env, "H5Rdereference: ref is NULL");
} /* end if */
else if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
h5badArgument( env, "H5Rdereference: obj ref input array != H5R_OBJ_REF_BUF_SIZE");
} /* end else if */
else if ((ref_type == H5R_DATASET_REGION) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
h5badArgument( env, "H5Rdereference: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
} /* end else if */
else {
refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rderefernce: ref not pinned");
} /* end if */
else {
retVal = H5Rdereference2((hid_t)dataset, (hid_t)access_list, (H5R_type_t)ref_type, refP);
UNUSED(clss);
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
if (NULL == ref)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference buffer is NULL");
if (retVal < 0)
h5libraryError(env);
} /* end else */
} /* end else */
if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: ref array length < 0");
}
if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference input array length != H5R_OBJ_REF_BUF_SIZE")
else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: unknown reference type");
PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rderefernce: reference buffer not pinned");
if ((retVal = H5Rdereference2((hid_t)dataset, (hid_t)access_list, (H5R_type_t)ref_type, refBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rdereference */
@ -131,33 +131,34 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5__1H5Rget_1region
(JNIEnv *env, jclass clss, jlong dataset, jint ref_type, jbyteArray ref)
{
hid_t retVal = -1;
jboolean isCopy;
jbyte *refP;
jboolean isCopy;
jbyte *refBuf = NULL;
jsize refBufLen;
hid_t retVal = H5I_INVALID_HID;
if (ref_type != H5R_DATASET_REGION) {
h5badArgument( env, "H5Rget_region: bad ref_type ");
} /* end if */
else if (ref == NULL) {
h5nullArgument( env, "H5Rget_region: ref is NULL");
} /* end if */
else if ( ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
h5badArgument( env, "H5Rget_region: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
} /* end if */
else {
refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rget_region: ref not pinned");
} /* end if */
else {
retVal = H5Rget_region((hid_t)dataset, (H5R_type_t)ref_type, refP);
UNUSED(clss);
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
if (H5R_DATASET_REGION != ref_type)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: bad reference type");
if (NULL == ref)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: reference buffer is NULL");
if (retVal < 0)
h5libraryError(env);
} /* end else */
} /* end else */
if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: ref array length < 0");
}
if (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE");
PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_region: reference buffer not pinned");
if ((retVal = H5Rget_region((hid_t)dataset, (H5R_type_t)ref_type, refBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jlong)retVal;
} /* end Java_hdf_hdf5lib_H5__1H5Rget_1region */
@ -171,31 +172,27 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref)
{
int retVal =-1;
jboolean isCopy;
jbyte *refP;
H5O_type_t object_info;
H5O_type_t object_info;
jboolean isCopy;
jbyte *refBuf = NULL;
int retVal = -1;
UNUSED(clss);
if (ref == NULL) {
h5nullArgument( env, "H5Rget_object_type: ref is NULL");
} /* end if */
else {
refP = (jbyte*)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rget_object_type: ref not pinned");
} /* end if */
else {
retVal = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refP, &object_info);
if(retVal >= 0)
retVal = object_info;
if (NULL == ref)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference buffer is NULL");
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type: reference buffer not pinned");
if (retVal < 0)
h5libraryError(env);
} /* end else */
} /* end else */
if ((retVal = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, &object_info)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (retVal >= 0)
retVal = object_info;
done:
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type */
@ -209,46 +206,33 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jintArray ref_obj)
{
jboolean isCopy, isCopy2;
jbyte *refBuf = NULL;
jint *ref_objP = NULL;
jint status;
int retVal = -1;
jint status;
jboolean isCopy;
jbyte *refP;
jint *ref_objP;
int retVal = -1;
UNUSED(clss);
if (NULL == ref)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference buffer is NULL");
if (NULL == ref_obj)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type: reference object is NULL");
if (ref == NULL) {
h5nullArgument( env, "H5Rget_object_type: ref is NULL");
} /* end if */
else if (ref_obj == NULL) {
h5nullArgument( env, "H5Rget_object_type: ref_obj is NULL");
} /* end else if */
else {
refP = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rget_object_type: ref not pinned");
} /* end if */
else {
ref_objP = (jint *)ENVPTR->GetIntArrayElements(ENVPAR ref_obj, &isCopy);
if (ref_objP == NULL) {
ENVPTR->ReleaseByteArrayElements(ENVPAR ref,refP,0);
h5JNIFatalError(env, "H5Rget_object_type: ref_obj not pinned");
} /* end if */
else {
status = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refP, (H5O_type_t*)ref_objP);
retVal = ref_objP[0];
PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type: reference buffer not pinned");
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
if (status < 0) {
ENVPTR->ReleaseIntArrayElements(ENVPAR ref_obj,ref_objP, JNI_ABORT);
h5libraryError(env);
} /* end if */
else {
ENVPTR->ReleaseIntArrayElements(ENVPAR ref_obj, ref_objP, 0);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
PIN_INT_ARRAY(ENVONLY, ref_obj, ref_objP, &isCopy2, "H5Rget_obj_type: reference object array not pinned");
if ((status = H5Rget_obj_type2((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, (H5O_type_t *)ref_objP)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
retVal = ref_objP[0];
done:
if (ref_objP)
UNPIN_INT_ARRAY(ENVONLY, ref_obj, ref_objP, (status < 0) ? JNI_ABORT : 0);
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2 */
@ -262,57 +246,52 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5Rget_1name
(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jobjectArray name, jlong size)
{
jlong ret_val = -1;
jbyte *refP;
jboolean isCopy;
char *aName = NULL;
jstring str;
size_t bs;
jboolean isCopy;
jstring str;
jsize refBufLen;
jbyte *refBuf = NULL;
char *aName = NULL;
jlong ret_val = -1;
bs = (size_t)size;
if (bs <= 0) {
h5badArgument(env, "H5Rget_name: size <= 0");
} /* end if */
else if (ref == NULL) {
h5nullArgument(env, "H5Rget_name: ref is NULL");
} /* end else if */
else {
if ((ref_type == H5R_OBJECT) && ENVPTR->GetArrayLength(ENVPAR ref) != H5R_OBJ_REF_BUF_SIZE) {
h5badArgument(env, "H5Rget_name: obj ref input array != H5R_OBJ_REF_BUF_SIZE");
} /* end if */
else if ((ref_type == H5R_DATASET_REGION)
&& ENVPTR->GetArrayLength(ENVPAR ref) != H5R_DSET_REG_REF_BUF_SIZE) {
h5badArgument(env, "H5Rget_name: region ref input array != H5R_DSET_REG_REF_BUF_SIZE");
} /* end else if */
else {
refP = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR ref, &isCopy);
if (refP == NULL) {
h5JNIFatalError(env, "H5Rget_name: ref not pinned");
} /* end if */
else {
aName = (char*)HDmalloc(sizeof(char)*bs);
if (aName == NULL) {
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
h5outOfMemory(env, "H5Rget_name: malloc failed");
} /* end if */
else {
ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refP, aName, bs) ;
UNUSED(clss);
ENVPTR->ReleaseByteArrayElements(ENVPAR ref, refP, JNI_ABORT);
if (ret_val < 0) {
HDfree(aName);
h5libraryError(env);
} /* end if */
else {
str = ENVPTR->NewStringUTF(ENVPAR aName);
ENVPTR->SetObjectArrayElement(ENVPAR name, 0, str);
if (size <= 0)
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: size <= 0");
if (NULL == ref)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference buffer is NULL");
HDfree(aName);
} /* end else */
} /* end else */
} /* end else */
} /* end else */
} /* end else */
if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: ref array length < 0");
}
if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE")
else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE")
else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type))
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: unknown reference type");
PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_name: reference buffer not pinned");
if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer");
if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName, (size_t)size + 1)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
aName[(size_t)size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->SetObjectArrayElement(ENVONLY, name, (jsize) 0, str);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
done:
if (aName)
HDfree(aName);
if (refBuf)
UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, JNI_ABORT);
return ret_val;
} /* end Java_hdf_hdf5lib_H5_H5Rget_1name */

1615
java/src/jni/h5sImp.c
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File diff suppressed because it is too large Load Diff

1354
java/src/jni/h5tImp.c
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File diff suppressed because it is too large Load Diff

4688
java/src/jni/h5util.c
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File diff suppressed because it is too large Load Diff

33
java/src/jni/h5util.h
View File

@ -35,18 +35,29 @@ typedef struct h5str_t {
size_t max; /* the allocated size of the string */
} h5str_t;
extern void h5str_new (h5str_t *str, size_t len);
extern void h5str_free (h5str_t *str);
extern void h5str_resize (h5str_t *str, size_t new_len);
extern char* h5str_append (h5str_t *str, const char* cstr);
extern size_t h5str_vlsprintf(h5str_t *str, hid_t container, hid_t tid, hvl_t *buf, int expand_data);
extern size_t h5str_sprintf(h5str_t *str, hid_t container, hid_t tid, void *buf, int ptrlen, int expand_data);
extern size_t h5str_vlsconvert(char *str, hid_t container, hid_t tid, hvl_t *buf, int expand_data);
extern size_t h5str_convert(char **str, hid_t container, hid_t tid, hvl_t *buf, int ptroffset, int expand_data);
extern void h5str_new(h5str_t *str, size_t len);
extern void h5str_free(h5str_t *str);
extern void h5str_resize(h5str_t *str, size_t new_len);
extern char* h5str_append(h5str_t *str, const char* cstr);
extern size_t h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset);
extern size_t h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, int expand_data);
extern void h5str_array_free(char **strs, size_t len);
extern int h5str_dump_simple_dset(FILE *stream, hid_t dset, int binary_order);
extern int h5str_dump_region_blocks_data(h5str_t *str, hid_t region, hid_t region_obj);
extern int h5str_dump_region_points_data(h5str_t *str, hid_t region, hid_t region_obj);
extern int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order);
extern int h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
extern int h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
extern htri_t H5Tdetect_variable_str(hid_t tid);
/*
* Symbols used to format the output of h5str_sprintf and
* to interpret the input to h5str_convert.
*/
#define H5_COMPOUND_BEGIN_INDICATOR "{"
#define H5_COMPOUND_END_INDICATOR "}"
#define H5_ARRAY_BEGIN_INDICATOR "["
#define H5_ARRAY_END_INDICATOR "]"
#define H5_VLEN_BEGIN_INDICATOR "("
#define H5_VLEN_END_INDICATOR ")"
/*
* Class: hdf_hdf5lib_H5

144
java/src/jni/h5vlImp.c
View File

@ -21,9 +21,9 @@
extern "C" {
#endif /* __cplusplus */
#include "hdf5.h"
#include <jni.h>
#include <stdlib.h>
#include "hdf5.h"
#include "h5jni.h"
#include "h5vlImp.h"
@ -36,18 +36,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name
(JNIEnv *env, jclass clss, jobject connector_name, jlong vipl_id)
{
hid_t status = -1;
const char *vlName;
const char *volName = NULL;
hid_t status = H5I_INVALID_HID;
PIN_JAVA_STRING(connector_name, vlName);
if (vlName != NULL) {
status = H5VLregister_connector_by_name(vlName, (hid_t)vipl_id);
UNUSED(clss);
UNPIN_JAVA_STRING(connector_name, vlName);
PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLregister_connector_by_name: VOL connector name not pinned");
if (status < 0)
h5libraryError(env);
}
if ((status = H5VLregister_connector_by_name(volName, (hid_t)vipl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (volName)
UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name */
@ -61,11 +62,14 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value
(JNIEnv *env, jclass clss, jint connector_value, jlong vipl_id)
{
hid_t status = H5VLregister_connector_by_value((H5VL_class_value_t)connector_value, (hid_t)vipl_id);
hid_t status = H5I_INVALID_HID;
if (status < 0)
h5libraryError(env);
UNUSED(clss);
if ((status = H5VLregister_connector_by_value((H5VL_class_value_t)connector_value, (hid_t)vipl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value */
@ -78,20 +82,21 @@ JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered
(JNIEnv *env, jclass clss, jobject connector_name)
{
const char *volName = NULL;
htri_t bval = JNI_FALSE;
const char *vlName;
PIN_JAVA_STRING(connector_name, vlName);
if (vlName != NULL) {
bval = H5VLis_connector_registered(vlName);
UNUSED(clss);
UNPIN_JAVA_STRING(connector_name, vlName);
PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLis_connector_registered: VOL connector name not pinned");
if (bval > 0)
bval = JNI_TRUE;
else if (bval < 0)
h5libraryError(env);
}
if ((bval = H5VLis_connector_registered(volName)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
bval = (bval > 0) ? JNI_TRUE : JNI_FALSE;
done:
if (volName)
UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jboolean)bval;
} /* end Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered */
@ -105,18 +110,19 @@ JNIEXPORT jlong JNICALL
Java_hdf_hdf5lib_H5_H5VLget_1connector_1id
(JNIEnv *env, jclass clss, jobject connector_name)
{
hid_t status = -1;
const char *vlName;
const char *volName = NULL;
hid_t status = H5I_INVALID_HID;
PIN_JAVA_STRING(connector_name, vlName);
if (vlName != NULL) {
status = H5VLget_connector_id(vlName);
UNUSED(clss);
UNPIN_JAVA_STRING(connector_name, vlName);
PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLget_connector_id: VOL connector name not pinned");
if (status < 0)
h5libraryError(env);
}
if ((status = H5VLget_connector_id(volName)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (volName)
UNPIN_JAVA_STRING(ENVONLY, connector_name, volName);
return (jlong)status;
} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id */
@ -131,41 +137,31 @@ JNIEXPORT jobject JNICALL
Java_hdf_hdf5lib_H5_H5VLget_1connector_1name
(JNIEnv *env, jclass clss, jlong object_id)
{
char *vlName;
ssize_t buf_size;
ssize_t status;
ssize_t buf_size, status;
char *volName = NULL;
jstring str = NULL;
/* get the length of the comment */
buf_size = H5VLget_connector_name((hid_t)object_id, NULL, 0);
if (buf_size < 0) {
H5Eprint2(H5E_DEFAULT, NULL);
UNUSED(clss);
h5badArgument(env, "H5VLget_connector_name: buf_size < 0");
} /* end if */
else if (buf_size > 0) {
buf_size++; /* add extra space for the null terminator */
vlName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size);
if (vlName == NULL) {
/* exception -- out of memory */
h5outOfMemory(env, "H5VLget_connector_name: malloc failed");
} /* end if */
else {
status = H5VLget_connector_name((hid_t)object_id, vlName, (size_t)buf_size);
/* Get the length of the comment */
if ((buf_size = H5VLget_connector_name((hid_t)object_id, NULL, 0)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (status < 0) {
h5libraryError(env);
} /* end if */
else {
/* may throw OutOfMemoryError */
str = ENVPTR->NewStringUTF(ENVPAR vlName);
if (str == NULL) {
h5JNIFatalError(env, "H5VLget_connector_name: return string not allocated");
} /* end if */
} /* end else */
HDfree(vlName);
}
} /* end else if */
if (buf_size > 0) {
if (NULL == (volName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1)))
H5_JNI_FATAL_ERROR(ENVONLY, "H5VLget_connector_name: failed to allocated VOL connector name buffer");
if ((status = H5VLget_connector_name((hid_t)object_id, volName, (size_t)buf_size + 1)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
volName[buf_size] = '\0';
if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, volName)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
done:
if (volName)
HDfree(volName);
return (jstring)str;
} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1name */
@ -179,10 +175,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5VLclose
(JNIEnv *env, jclass clss, jlong connector_id)
{
herr_t retValue = H5VLclose((hid_t)connector_id);
herr_t retValue = FAIL;
if (retValue < 0)
h5libraryError(env);
UNUSED(clss);
if ((retValue = H5VLclose((hid_t)connector_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5VLclose */
/*
@ -194,10 +195,15 @@ JNIEXPORT void JNICALL
Java_hdf_hdf5lib_H5_H5VLunregister_1connector
(JNIEnv *env, jclass clss, jlong connector_id)
{
herr_t retValue = H5VLunregister_connector((hid_t)connector_id);
herr_t retValue = FAIL;
if (retValue < 0)
h5libraryError(env);
UNUSED(clss);
if ((retValue = H5VLunregister_connector((hid_t)connector_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return;
} /* end Java_hdf_hdf5lib_H5_H5VLunregister_1connector */

2
java/src/jni/h5vlImp.h
View File

@ -44,7 +44,7 @@ Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value
* Signature: (Ljava/lang/String;)Z
*/
JNIEXPORT jboolean JNICALL
Java_hdf_hdf5lib_H5_H5VLis_connector_registered
Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered
(JNIEnv *, jclass, jobject);
/*

29
java/src/jni/h5zImp.c
View File

@ -36,12 +36,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Zunregister
(JNIEnv *env, jclass clss, jint filter)
{
herr_t retValue = H5Zunregister((H5Z_filter_t)filter);
herr_t retVal = FAIL;
if (retValue < 0)
h5libraryError(env);
UNUSED(clss);
return (jint)retValue;
if ((retVal = H5Zunregister((H5Z_filter_t)filter)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Zunregister */
/*
@ -53,12 +56,15 @@ JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5_H5Zfilter_1avail
(JNIEnv *env, jclass clss, jint filter)
{
herr_t retValue = H5Zfilter_avail((H5Z_filter_t)filter);
herr_t retVal = FAIL;
if (retValue < 0)
h5libraryError(env);
UNUSED(clss);
return (jint)retValue;
if ((retVal = H5Zfilter_avail((H5Z_filter_t)filter)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)retVal;
} /* end Java_hdf_hdf5lib_H5_H5Zfilter_1avail */
/*
@ -73,9 +79,12 @@ Java_hdf_hdf5lib_H5_H5Zget_1filter_1info
{
unsigned int flags = 0;
if (H5Zget_filter_info ((H5Z_filter_t) filter, (unsigned *) &flags) < 0)
h5libraryError(env);
UNUSED(clss);
if (H5Zget_filter_info((H5Z_filter_t) filter, (unsigned *) &flags) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
return (jint)flags;
} /* end Java_hdf_hdf5lib_H5_H5Zget_1filter_1info */

1270
java/src/jni/nativeData.c
View File

File diff suppressed because it is too large Load Diff

17
java/test/TestH5.java
View File

@ -177,6 +177,23 @@ public class TestH5 {
for (int i = 0; i < 2; i++)
assertFalse(libversion[i] == 0);
}
/**
* Test method for {@link hdf.hdf5lib.H5#H5get_libversion(int[])}
* to ensure a null libversion parameter causes the function to
* fail.
*/
@Test
public void testH5get_libversion_null_param() {
try {
H5.H5get_libversion(null);
}
catch (Throwable err) {
return;
}
fail("H5.H5get_libversion: succeeded with a null libversion parameter!");
}
/**
* Test method for

3
java/test/testfiles/JUnit-TestH5.txt
View File

@ -1,4 +1,5 @@
JUnit version 4.11
.testH5get_libversion_null_param
.testJ2C
.testIsSerializable
.testH5garbage_collect
@ -11,5 +12,5 @@ JUnit version 4.11
Time: XXXX
OK (9 tests)
OK (10 tests)

4
src/H5Torder.c
View File

@ -100,11 +100,11 @@ H5Tget_order(hid_t type_id)
/* Check args */
if(NULL == (dt = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_DATATYPE, H5E_BADTYPE, H5T_ORDER_ERROR, "not a datatype")
HGOTO_ERROR(H5E_DATATYPE, H5E_BADTYPE, H5T_ORDER_ERROR, "not a datatype")
/* Get order */
if(H5T_ORDER_ERROR == (ret_value = H5T_get_order(dt)))
HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, H5T_ORDER_ERROR, "cant't get order for specified datatype")
HGOTO_ERROR(H5E_DATATYPE, H5E_UNSUPPORTED, H5T_ORDER_ERROR, "can't get order for specified datatype")
done:
FUNC_LEAVE_API(ret_value)