[svn-r3308]

Purpose:
    Removing Ragged.html and RM_H5RA.html from the HDF5 doc set.
    These are the UG and RM pages, respectively, for Ragged Arrays,
    which were removed from the library last week.
Solution:
    Removed the files Ragged.html and RM_H5RA.html.
Platforms tested:
    IE 5
This commit is contained in:
Frank Baker 2001-01-19 14:18:54 -05:00
parent 7c935bbd09
commit c7dbb9aca3
2 changed files with 0 additions and 618 deletions

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@ -1,370 +0,0 @@
<html>
<head><title>
HDF5/H5RA Experimental API Specification
</title></head>
<body bgcolor="#FFFFFF">
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<center>
<h1>H5RA: Ragged Array Interface</h1>
</center>
<h2>Ragged Array API Functions</h2>
<table border=1>
<tr><th align=left>
<font color=red>
The H5RA Interface is strictly experimental at this time;
the interface may change dramatically or support for ragged arrays
may be unavailable in future in releases. As a result, future releases
may be unable to retrieve data stored with this interface.
<p><center>Use these functions at your own risk!<br>
Do not create any archives using this interface!</center>
</font>
</th></tr>
</table>
<p>
These functions enable the user to store and retrieve data in ragged arrays.
<table border=0>
<tr><td valign=top>
<ul>
<li><a href="#Ragged-Create">H5RAcreate</a>
</ul>
</td><td>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</td><td valign=top>
<ul>
<li><a href="#Ragged-Open">H5RAopen</a>
<li><a href="#Ragged-Close">H5RAclose</a>
</ul>
</td><td>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</td><td valign=top>
<ul>
<li><a href="#Ragged-Write">H5RAwrite</a>
<li><a href="#Ragged-Read">H5RAread</a>
</ul>
</td></tr>
</table>
<p>
This version of the Ragged Array interface implements a
two-dimensional array where each row of the array is a different length.
It is intended for applications where the distribution of row lengths
is such that most rows are near an average length with only a few rows
that are significantly shorter or longer. The raw data is split among
two datasets, <code>raw</code> and <code>over</code>: the <code>raw</code>
dataset is a two-dimensional chunked dataset whose width is large enough
to hold most of the rows while the <code>over</code> dataset is a heap
that stores the ends of rows that overflow the first dataset.
A third dataset, called <code>meta</code>, contains one record for each
row and describes what elements, if any, overflow the <code>raw</code>
dataset and where they are stored in the <code>over</code> dataset.
All three datasets are contained in a single group whose name is the
name of the ragged array.
<p>
<hr>
<dl>
<dt><strong>Name:</strong> <a name="Ragged-Create">H5RAcreate</a>
<dt><strong>Signature:</strong>
<dd><em>hid_t</em> <code>H5RAcreate</code>(<em>hid_t</em> <code>loc_id</code>,
<em>const char *</em><code>name</code>,
<em>hid_t</em> <code>type_id</code>,
<em>hid_t</em> <code>plist_id</code>
)
<dt><strong>Purpose:</strong>
<dd>Creates a ragged array.
<dt><strong>Description:</strong>
<dd><code>H5RAcreate</code> creates a new ragged array with the
name specified in <code>name</code>. A ragged array is
implemented as a group containing three datasets.
The dataset <code>raw</code> is a fixed width dataset
which will hold the majority of the data.
The dataset <code>over</code> is a one dimensional heap
which will hold the end of rows which are too long to fit
in <code>raw</code>
Finally, the <code>meta</code> dataset contains information
about the <code>over</code> array. All elements of the
ragged array are stored with the same data type.
<p>
The property list <code>plist_id</code> should contain
information about chunking. The chunk width will determine
the width of the <code>raw</code> dataset while the chunk
length should be such that the total chunk size is
reasonably large since I/O will be performed in units
of chunks). If the <code>plist_id</code> does not have
a chunk size defined (e.g., <code>H5P_DEFAULT</code>)
then this function will fail.
<dt><strong>Parameters:</strong>
<dl>
<dt><em>hid_t</em> <code>loc_id</code>
<dd>Location identifier of the dataset.
<dt><em>const char *</em><code>name</code>
<dd>The assigned name of the data set to be stored in the
ragged array.
<dt><em>hid_t</em> <code>type_id</code>
<dd>Data type identifier for the ragged array data.
<dt><em>hid_t</em> <code>plist_id</code>
<dd>Property list of the dataset.
</dl>
<dt><strong>Returns:</strong>
<dd>Returns a ragged array identifier if successful;
otherwise returns a negative value.
</dl>
<hr>
<dl>
<dt><strong>Name:</strong> <a name="Ragged-Open">H5RAopen</a>
<dt><strong>Signature:</strong>
<dd><em>hid_t</em> <code>H5RAopen</code>(<em>hid_t</em> <code>loc_id</code>,
<em>const char *</em><code>name</code>
)
<dt><strong>Purpose:</strong>
<dd>Opens a ragged array.
<dt><strong>Description:</strong>
<dd><code>H5RAopen</code> opens an existing ragged array.
<p>
The name of the array, <code>name</code>, should be the same
that was used when the array was created, i.e., the name of
the group which implements the array.
<dt><strong>Parameters:</strong>
<dl>
<dt><em>hid_t</em> <code>loc_id</code>
<dd>The location identifier of the dataset.
<dt><em>const char *</em><code>name</code>
<dd>The name of the ragged array.
</dl>
<dt><strong>Returns:</strong>
<dd>Returns a ragged array identifier if successful;
otherwise returns a negative value.
</dl>
<hr>
<dl>
<dt><strong>Name:</strong> <a name="Ragged-Close">H5RAclose</a>
<dt><strong>Signature:</strong>
<dd><em>herr_t</em> <code>H5RAclose</code>(<em>hid_t</em> <code>array_id</code>)
<dt><strong>Purpose:</strong>
<dd>Closes a ragged array.
<dt><strong>Description:</strong>
<dd><code>H5RAclose</code> closes the ragged array specified
with the array identifier <code>array_id</code>.
<dt><strong>Parameters:</strong>
<dl>
<dt><em>hid_t</em> <code>array_id</code>
<dd>The array identifier for the ragged array to be closed.
</dl>
<dt><strong>Returns:</strong>
<dd>Returns a non-negative value if successful;
otherwise returns a negative value.
</dl>
<hr>
<dl>
<dt><strong>Name:</strong> <a name="Ragged-Write">H5RAwrite</a>
<dt><strong>Signature:</strong>
<dd><em>herr_t</em> <code>H5RAwrite</code>(<em>hid_t</em> <code>array_id</code>,
<em>hssize_t</em> <code>start_row</code>,
<em>hsize_t</em> <code>nrows</code>,
<em>hid_t</em> <code>type_id</code>,
<em>hsize_t</em> <code>size[/*nrows*/]</code>,
<em>void *</em><code>buf[/*nrows*/]</code>
)
<dt><strong>Purpose:</strong>
<dd>Writes to a ragged array.
<dt><strong>Description:</strong>
<dd><code>H5RAwrite</code> writes a contiguous set of rows to a
ragged array beginning at row number <code>start_row</code>
and continuing for <code>nrows</code> rows.
<p>
Each row of the ragged array contains <code>size[]</code>
elements of type <code>type_id</code> and each row is stored
in a buffer pointed to by <code>buf[]</code>.
<p>
Datatype conversion takes place at the time of a read or write
and is automatic. See the
<a href="Datatypes.html#Datatypes-DataConversion">Data Conversion</a>
section of <cite>The Data Type Interface (H5T)</cite> in the
<cite>HDF5 User's Guide</cite> for a discussion of
data conversion, including the range of conversions currently
supported by the HDF5 libraries.
<dt><strong>Parameters:</strong>
<dl>
<dt><em>hid_t</em> <code>array_id</code>
<dd>Array identifier for the ragged array to be written to.
<dt><em>hssize_t</em> <code>start_row</code>
<dd>Row at which the write will start.
<dt><em>hsize_t</em> <code>nrows</code>
<dd>Number of rows to be written
<dt><em>hid_t</em> <code>type_id</code>
<dd>Data type identifier for the data to be written.
<dt><em>hsize_t</em> <code>size[/*nrows*/]</code>
<dd>Lengths of the rows to be written.
<dt><em>void *</em><code>buf[/*nrows*/]</code>
<dd>Pointers to buffers containing the data to be written.
</dl>
<dt><strong>Returns:</strong>
<dd>Returns a non-negative value if successful;
otherwise returns a negative value.
</dl>
<hr>
<dl>
<dt><strong>Name:</strong> <a name="Ragged-Read">H5RAread</a>
<dt><strong>Signature:</strong>
<dd><em>herr_t</em> <code>H5RAread</code>(<em>hid_t</em> <code>array_id</code>,
<em>hssize_t</em> <code>start_row</code>,
<em>hsize_t</em> <code>nrows</code>,
<em>hid_t</em> <code>type_id</code>,
<em>hsize_t</em> <code>size[/*nrows*/]</code>,
<em>void *</em><code>buf[/*nrows*/]</code>
)
<dt><strong>Purpose:</strong>
<dd>
<dt><strong>Description:</strong>
<dd><code>H5RAread</code> reads the contents of one or more rows
of the ragged array pointed to by <code>array_id</code>.
<p>
The rows to be read begin at row <code>start_row</code> and
continue for <code>nrows</code> rows.
<p>
All raw data is converted to type <code>type_id</code>.
<p>
The caller must allocate the <code>size[]</code> and
<code>buf[]</code> arrays.
<p>
Memory for the data can be allocated by either the caller or
the library. In the former case, the caller should initialize
the <code>buf[]</code> array with pointers to valid memory and
the <code>size[]</code> array with the lengths of the buffers.
In the latter case, the caller should initialize
<code>buf[]</code> with null pointers (the input value of
<code>size[]</code> is irrelevant in this case) and the
library will allocate memory for each row by calling
<code>malloc()</code>.
<p>
Datatype conversion takes place at the time of a read or write
and is automatic. See the
<a href="Datatypes.html#Datatypes-DataConversion">Data Conversion</a>
section of <cite>The Data Type Interface (H5T)</cite> in the
<cite>HDF5 User's Guide</cite> for a discussion of
data conversion, including the range of conversions currently
supported by the HDF5 libraries.
<dt><strong>Parameters:</strong>
<dl>
<dt><em>hid_t</em> <code>array_id</code>
<dd>Array identifier for the ragged array to be read from.
<dt><em>hssize_t</em> <code>start_row</code>
<dd>Row at which the read will start.
<dt><em>hsize_t</em> <code>nrows</code>
<dd>Number of rows to be read
<dt><em>hid_t</em> <code>type_id</code>
<dd>Data type identifier for the data to be read.
<dt><em>hsize_t</em> <code>size[/*nrows*/]</code>
<dd>Lengths of the rows to be read.
<dt><em>void *</em><code>buf[/*nrows*/]</code>
<dd>Pointers to buffers into which the data is to be read.
</dl>
<dt><strong>Returns:</strong>
<dd>Returns a non-negative value if successful.
The values of the <code>size[]</code> array will be the
true length of each row. If a row is longer than the
caller-allocated length, then <code>size[]</code> will
contain the true length of the row although not all elements
of that row will be stored in the buffer.
<p>
Returns a negative value on failure. The <code>buf[]</code>
array will contain it's original pointers (null or otherwise),
although the caller-supplied buffers may have been modified.
The <code>size[]</code> array may also have been modified.
</dl>
<hr>
<center>
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<a href="H5.intro.html">Introduction to HDF5</a>&nbsp;<br>
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Last modified: 8 July 1999
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Describes HDF5 Release 1.4 Beta, December 2000
</body>
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<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN">
<html>
<head>
<title>Ragged Array Experimental Interface (H5RA)</title>
</head>
<body bgcolor="#FFFFFF">
<hr>
<center>
<table border=0 width=98%>
<tr><td valign=top align=left>
<a href="H5.intro.html">Introduction to HDF5</a>&nbsp;<br>
<a href="RM_H5Front.html">HDF5 Reference Manual</a>&nbsp;<br>
<a href="index.html">Other HDF5 documents and links</a>&nbsp;<br>
<!--
<a href="Glossary.html">Glossary</a><br>
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And in this document, the
<a href="H5.user.html"><strong>HDF5 User's Guide:</strong></a>&nbsp;&nbsp;&nbsp;&nbsp;
<br>
<a href="Files.html">Files</a>&nbsp;&nbsp;
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Ragged Arrays&nbsp;&nbsp;
</td></tr>
</table>
</center>
<hr>
<h1>The Ragged Array Interface (H5RA)</h1>
<table border=1>
<tr><th align=left>
<font color=red>
The H5RA Interface is strictly experimental at this time;
the interface may change dramatically or support for ragged arrays
may be unavailable in future in releases. As a result, future releases
may be unable to retrieve data stored with this interface.
<p><center>Use these functions at your own risk!<br>
Do not create any archives using this interface!</center>
</font>
</th></tr>
</table>
<h2>1. Introduction</h2>
<p><b>Ragged arrays should be considered alpha quality. They were
added to HDF5 to satisfy the needs of the ASCI/DMF vector
bundle project; the interface and storage methods are likely
to change in the future in ways that are not backward
compatible.</b>
<p>A two-dimensional ragged array has been added to the library
and built on top of other existing functionality. A ragged
array is a one-dimensional array of <em>rows</em> where the
length of any row is independent of the lengths of the other
rows. The number of rows and the length of each row can be
changed at any time (the current version does not support
truncating an array by removing rows). All elements of the
ragged array have the same datatype and, as with datasets, the
data is type-converted between memory buffers and files.
<p>The current implementation works best when most of the rows are
approximately the same length since a two dimensional dataset
can be created to hold a nominal number of elements from each
row with the additional elements stored in a separate dataset
which implements a heap.
<p>A ragged array is a composite object implemented as a group
with three datasets. The name of the group is the name of the
ragged array. The <em>raw</em> dataset is a two-dimensional
array that contains the first <em>N</em> elements of each row
where <em>N</em> is determined by the application when the array
is created. If most rows have fewer than <em>N</em> elements
then internal fragmentation may be quite bad.
<p>The <em>over</em> dataset is a one-dimensional array that
contains elements from each row that don't fit in the
<em>raw</em> dataset.
<p>The <em>meta</em> dataset maintains information about each row
such as the number of elements in the row, the location of the
overflow elements in the <em>over</em> dataset (if any), and the
amount of space reserved in <em>over</em> for the row. The
<em>meta</em> dataset has one entry per row and is where most of
the storage overhead is concentrated when rows are relatively
short.
<h2>2. Opening and Closing</h2>
<dl>
<dt><code>hid_t H5RAcreate (hid_t <em>location</em>, const char
*<em>name</em>, hid_t <em>type</em>, hid_t
<em>plist</em>)</code>
<dd>This function creates a new ragged array by creating the
group with the specified name and populating it with the
component datasets (which should not be accessed
independently). The dataset creation property list
<em>plist</em> defines the width of the <em>raw</em> dataset;
a nominal row is considered to be the width of a chunk. The
<em>type</em> argument defines the datatype which will be
stored in the file. A negative value is returned if the array
cannot be created.
<br><br>
<dt><code>hid_t H5RAopen (hid_t <em>location</em>, const char
*<em>name</em>)</code>
<dd>This function opens a ragged array by opening the specified
group and the component datasets (which should not be accessed
indepently). A negative value is returned if the array cannot
be opened.
<br><br>
<dt><code>herr_t H5RAclose (hid_t <em>array</em>)</code>
<dd>All ragged arrays should be closed by calling this
function. The group and component datasets will be closed
automatically by the library.
</dl>
<h2>3. Reading and Writing</h2>
<p>In order to be as efficient as possible the ragged array layer
operates on sets of contiguous rows and it is to the
application's advantage to perform I/O on as many rows at a time
as possible. These functions take a starting row number and the
number of rows on which to operate.
<dl>
<dt><code>herr_t H5RAwrite (hid_t <em>array_id</em>, hssize_t
<em>start_row</em>, hsize_t <em>nrows</em>, hid_t
<em>type</em>, hsize_t <em>size</em>[], void
*<em>buf</em>[])</code>
<dd>A set of ragged array rows beginning at <em>start_row</em>
and continuing for <em>nrows</em> is written to the file,
converting the memory datatype <em>type</em> to the file data
type which was defined when the array was created. The number
of elements to write from each row is specified in the
<em>size</em> array and the data for each row is pointed to
from the <em>buf</em> array. The <em>size</em> and
<em>buf</em> are indexed so their first element corresponds to
the first row on which to operate.
<br><br>
<dt><code>herr_t H5RAread (hid_t <em>array_id</em>, hssize_t
<em>start_row</em>, hsize_t <em>nrows</em>, hid_t
<em>type</em>, hsize_t <em>size</em>[], void
*<em>buf</em>[])</code>
<dd>A set of ragged array rows beginning at <em>start_row</em>
and continuing for <em>nrows</em> is read from the file,
converting from the file datatype which was defined when the
array was created to the memory datatype <em>type</em>. The
number of elements to read from each row is specified in the
<em>size</em> array and the buffers in which to place the
results are pointed to by the <em>buf</em> array. On return,
the <em>size</em> array will contain the actual size of the
row which may be different than the requested size. When the
request size is smaller than the actual size the row will be
truncated; otherwise the remainder of the output buffer will
be zero filled. If a pointer in the <em>buf</em> array is
null then the library will ignore the corresponding
<em>size</em> value and allocate a buffer large enough to hold
the entire row. This function returns negative for failures
with <em>buf</em> containing the original input values.
</dl>
<hr>
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<tr><td valign=top align=left>
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Ragged Arrays&nbsp;&nbsp;
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<hr>
<address>
<a href="mailto:hdfhelp@ncsa.uiuc.edu">HDF Help Desk</a>
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<!-- Created: Wed Aug 26 14:10:32 EDT 1998 -->
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Last modified: 13 December 1999
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Describes HDF5 Release 1.4 Beta, December 2000
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