mirror of
https://github.com/HDFGroup/hdf5.git
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[svn-r29062] HDFFV-9564: Implement VDS Fortran wrappers.
Tested: h5committest.new
This commit is contained in:
Scot Breitenfeld
parent
48bebcc39e
commit
c418bc964d
1
MANIFEST
1
MANIFEST
@ -216,6 +216,7 @@
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./fortran/src/H5f90global.F90
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./fortran/src/H5f90i.h
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./fortran/src/H5f90kit.c
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./fortran/src/H5fortkit.F90
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./fortran/src/H5f90proto.h
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./fortran/src/H5match_types.c
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./fortran/src/HDF5.F90
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@ -161,6 +161,7 @@ set (f90_F_BASE_SRCS
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# normal distribution
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${HDF5_F90_SRC_SOURCE_DIR}/H5f90global.F90
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${HDF5_F90_SRC_SOURCE_DIR}/H5fortkit.F90
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${HDF5_F90_SRC_SOURCE_DIR}/H5_ff.F90
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${HDF5_F90_SRC_SOURCE_DIR}/H5Aff.F90
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${HDF5_F90_SRC_SOURCE_DIR}/H5Dff.F90
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@ -4,7 +4,7 @@
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! MODULE H5D
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!
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! FILE
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! fortran/src/H5Dff.f90
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! fortran/src/H5Dff.F90
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!
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! PURPOSE
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! This file contains Fortran interfaces for H5D functions.
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@ -4,7 +4,7 @@
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! MODULE H5E
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!
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! FILE
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! fortran/src/H5Eff.f90
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! fortran/src/H5Eff.F90
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!
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! PURPOSE
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! This Module contains Fortran interfaces for H5E functions.
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@ -4,7 +4,7 @@
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! MODULE H5F
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!
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! FILE
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! H5Fff.f90
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! H5Fff.F90
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!
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! PURPOSE
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! This file contains Fortran interfaces for H5F functions.
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@ -4,7 +4,7 @@
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! MODULE H5G
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!
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! FILE
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! fortran/src/H5Gff.f90
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! fortran/src/H5Gff.F90
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!
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! PURPOSE
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! This file contains Fortran interfaces for H5G functions.
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@ -4,7 +4,7 @@
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! MODULE H5O
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!
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! FILE
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! fortran/src/H5Off.f90
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! fortran/src/H5Off.F90
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!
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! PURPOSE
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! This file contains Fortran interfaces for H5O functions.
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@ -42,7 +42,8 @@ MODULE H5P
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USE, INTRINSIC :: ISO_C_BINDING
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USE H5GLOBAL
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USE H5fortkit
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INTERFACE h5pset_fapl_multi_f
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MODULE PROCEDURE h5pset_fapl_multi_l
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MODULE PROCEDURE h5pset_fapl_multi_s
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@ -7321,6 +7322,520 @@ SUBROUTINE h5pset_attr_phase_change_f(ocpl_id, max_compact, min_dense, hdferr)
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END SUBROUTINE h5pget_mpio_actual_io_mode_f
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#endif
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!
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! V I R T U A L D A T S E T S
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!
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!****s*
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! NAME
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! h5pset_virtual_view_f
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!
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! PURPOSE
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! Sets the view of the virtual dataset (VDS) to include or exclude missing mapped elements.
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!
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! INPUTS
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! dapl_id - Identifier of the virtual dataset access property list.
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! view - Flag specifying the extent of the data to be included in the view.
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! Valid values are:
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! H5D_VDS_FIRST_MISSING_F
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! H5D_VDS_LAST_AVAILABLE_F
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!
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! OUTPUTS
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!
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! hdferr - Returns 0 if successful and -1 if fails.
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!
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! AUTHOR
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! M. Scot Breitenfeld
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! Nov 2, 2015
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!
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!
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! SOURCE
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SUBROUTINE h5pset_virtual_view_f(dapl_id, view, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: dapl_id
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INTEGER , INTENT(IN) :: view
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INTEGER , INTENT(OUT) :: hdferr
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!*****
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INTERFACE
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INTEGER FUNCTION h5pset_virtual_view(dapl_id, view) BIND(C,NAME='H5Pset_virtual_view')
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IMPORT :: HID_T, ENUM_T
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN), VALUE :: dapl_id
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INTEGER(ENUM_T), INTENT(IN), VALUE :: view
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END FUNCTION h5pset_virtual_view
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END INTERFACE
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hdferr = INT( h5pset_virtual_view(dapl_id, INT(view,ENUM_T)) )
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END SUBROUTINE h5pset_virtual_view_f
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!****s*
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! NAME
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! h5pget_virtual_view_f
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!
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! PURPOSE
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! Retrieves the view of a virtual dataset accessed with dapl_id.
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!
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! INPUTS
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! dapl_id - Dataset access property list identifier for the virtual dataset
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!
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! OUTPUTS
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! view - The flag specifying the view of the virtual dataset.
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! Valid values are:
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! H5D_VDS_FIRST_MISSING_F
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! H5D_VDS_LAST_AVAILABLE_F
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! hdferr - Returns 0 if successful and -1 if fails.
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!
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! AUTHOR
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! M. Scot Breitenfeld
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! Nov 2, 2015
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!
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! SOURCE
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SUBROUTINE h5pget_virtual_view_f(dapl_id, view, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: dapl_id
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INTEGER , INTENT(INOUT) :: view
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INTEGER , INTENT(OUT) :: hdferr
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!*****
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INTEGER(ENUM_T) :: view_enum
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INTERFACE
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INTEGER FUNCTION h5pget_virtual_view(dapl_id, view) BIND(C,NAME='H5Pget_virtual_view')
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IMPORT :: HID_T, ENUM_T
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN), VALUE :: dapl_id
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INTEGER(ENUM_T), INTENT(OUT) :: view
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END FUNCTION h5pget_virtual_view
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END INTERFACE
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hdferr = INT( h5pget_virtual_view(dapl_id, view_enum) )
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view = INT(view_enum)
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END SUBROUTINE h5pget_virtual_view_f
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!****s*
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! NAME
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! h5pset_virtual_printf_gap_f
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!
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! PURPOSE
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! Sets the maximum number of missing source files and/or datasets with the printf-style names
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! when getting the extent of an unlimited virtual dataset.
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!
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! INPUTS
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! dapl_id - Dataset access property list identifier for the virtual dataset.
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! gap_size - Maximum number of files and/or datasets allowed to be missing for determining
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! the extent of an unlimited virtual dataset with printf-style mappings.
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!
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! OUTPUTS
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! hdferr - Returns 0 if successful and -1 if fails.
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!
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! AUTHOR
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! M. Scot Breitenfeld
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! Nov 2, 2015
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!
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! HISTORY
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!
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! SOURCE
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SUBROUTINE h5pset_virtual_printf_gap_f(dapl_id, gap_size, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T) , INTENT(IN) :: dapl_id
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INTEGER(HSIZE_T), INTENT(IN) :: gap_size
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INTEGER , INTENT(OUT) :: hdferr
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!*****
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INTERFACE
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INTEGER FUNCTION h5pset_virtual_printf_gap(dapl_id, gap_size) BIND(C,NAME='H5Pset_virtual_printf_gap')
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IMPORT :: HID_T, HSIZE_T
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN), VALUE :: dapl_id
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INTEGER(HSIZE_T), INTENT(IN), VALUE :: gap_size
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END FUNCTION h5pset_virtual_printf_gap
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END INTERFACE
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hdferr = INT( h5pset_virtual_printf_gap(dapl_id, gap_size) )
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END SUBROUTINE h5pset_virtual_printf_gap_f
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!****s*
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! NAME
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! h5pget_virtual_printf_gap_f
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!
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! PURPOSE
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! Returns the maximum number of missing source files and/or datasets with the
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! printf-style names when getting the extent for an unlimited virtual dataset.
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!
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! INPUTS
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! dapl_id - Dataset access property list identifier for the virtual dataset
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!
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! OUTPUTS
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! gap_size - Maximum number of the files and/or datasets allowed to be missing for
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! determining the extent of an unlimited virtual dataset with printf-style mappings.
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! hdferr - Returns 0 if successful and -1 if fails
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!
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! AUTHOR
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! M. Scot Breitenfeld
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! Nov 2, 2015
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!
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! HISTORY
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!
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! SOURCE
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SUBROUTINE h5pget_virtual_printf_gap_f(dapl_id, gap_size, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T) , INTENT(IN) :: dapl_id
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INTEGER(HSIZE_T), INTENT(OUT) :: gap_size
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INTEGER , INTENT(OUT) :: hdferr
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!*****
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INTERFACE
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INTEGER FUNCTION h5pget_virtual_printf_gap(dapl_id, gap_size) BIND(C,NAME='H5Pget_virtual_printf_gap')
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IMPORT :: HID_T, HSIZE_T
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN), VALUE :: dapl_id
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INTEGER(HSIZE_T), INTENT(OUT) :: gap_size
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END FUNCTION h5pget_virtual_printf_gap
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END INTERFACE
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hdferr = INT( h5pget_virtual_printf_gap(dapl_id, gap_size) )
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END SUBROUTINE h5pget_virtual_printf_gap_f
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!****s*
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! NAME
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! h5pset_virtual_f
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!
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! PURPOSE
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! Sets the mapping between virtual and source datasets.
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!
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! INPUTS
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! dcpl_id - The identifier of the dataset creation property list that will be
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! used when creating the virtual dataset.
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! vspace_id - The dataspace identifier with the selection within the virtual
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! dataset applied, possibly an unlimited selection.
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! src_file_name - The name of the HDF5 file where the source dataset is located.
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! src_dset_name - The path to the HDF5 dataset in the file specified by src_file_name.
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! src_space_id - The source dataset’s dataspace identifier with a selection applied, possibly an unlimited selection
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!
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! OUTPUTS
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! hdferr - Returns 0 if successful and -1 if fails
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! AUTHOR
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! M. Scot Breitenfeld
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! Nov 2, 2015
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!
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! HISTORY
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!
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! SOURCE
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SUBROUTINE h5pset_virtual_f(dcpl_id, vspace_id, src_file_name, src_dset_name, src_space_id, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: dcpl_id
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INTEGER(HID_T), INTENT(IN) :: vspace_id
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CHARACTER(LEN=*), INTENT(IN) :: src_file_name
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CHARACTER(LEN=*), INTENT(IN) :: src_dset_name
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INTEGER(HID_T), INTENT(IN) :: src_space_id
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INTEGER, INTENT(OUT) :: hdferr
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!*****
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CHARACTER(LEN=LEN_TRIM(src_file_name)+1,KIND=C_CHAR) :: c_src_file_name
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CHARACTER(LEN=LEN_TRIM(src_dset_name)+1,KIND=C_CHAR) :: c_src_dset_name
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INTERFACE
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INTEGER FUNCTION h5pset_virtual(dcpl_id, vspace_id, c_src_file_name, c_src_dset_name, src_space_id) &
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BIND(C,NAME='H5Pset_virtual')
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IMPORT :: C_CHAR
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IMPORT :: HID_T
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN), VALUE :: dcpl_id
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INTEGER(HID_T), INTENT(IN), VALUE :: vspace_id
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CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: c_src_file_name
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CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: c_src_dset_name
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INTEGER(HID_T), INTENT(IN), VALUE :: src_space_id
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END FUNCTION h5pset_virtual
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END INTERFACE
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c_src_file_name = TRIM(src_file_name)//C_NULL_CHAR
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c_src_dset_name = TRIM(src_dset_name)//C_NULL_CHAR
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hdferr = h5pset_virtual(dcpl_id, vspace_id, c_src_file_name, c_src_dset_name, src_space_id)
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END SUBROUTINE h5pset_virtual_f
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!****s*
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! NAME
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! h5pget_virtual_count_f
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!
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! PURPOSE
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! Gets the number of mappings for the virtual dataset.
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!
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! INPUTS
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! dcpl_id - The identifier of the virtual dataset creation property list.
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!
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! OUTPUTS
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! count - The number of mappings.
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! hdferr - Returns 0 if successful and -1 if fails
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! AUTHOR
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! M. Scot Breitenfeld
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! Nov 2, 2015
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!
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! HISTORY
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!
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! SOURCE
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SUBROUTINE h5pget_virtual_count_f(dcpl_id, count, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T), INTENT(IN) :: dcpl_id
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INTEGER(SIZE_T), INTENT(OUT) :: count
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INTEGER, INTENT(OUT) :: hdferr
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!*****
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INTERFACE
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INTEGER(HID_T) FUNCTION h5pget_virtual_count(dcpl_id, count) BIND(C,NAME='H5Pget_virtual_count')
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IMPORT :: HID_T, SIZE_T
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IMPLICIT NONE
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INTEGER(HID_T) , INTENT(IN), VALUE :: dcpl_id
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INTEGER(SIZE_T), INTENT(OUT) :: count
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END FUNCTION h5pget_virtual_count
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END INTERFACE
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hdferr = INT( h5pget_virtual_count(dcpl_id, count))
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END SUBROUTINE h5pget_virtual_count_f
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!****s*
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! NAME
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! h5pget_virtual_vspace_f
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!
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! PURPOSE
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! Gets a dataspace identifier for the selection within the virtual dataset used in the mapping.
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!
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! INPUTS
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! dcpl_id - The identifier of the virtual dataset creation property list.
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! index - Mapping index.
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! The value of index is 0 (zero) or greater and less than count (0 ≤ index < count),
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! where count is the number of mappings returned by h5pget_virtual_count.
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!
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! OUTPUTS
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! hdferr - Returns 0 if successful and -1 if fails.
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!
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! AUTHOR
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! M. Scot Breitenfeld
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! Nov 2, 2015
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!
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! HISTORY
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!
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! SOURCE
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SUBROUTINE h5pget_virtual_vspace_f(dcpl_id, index, ds_id, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T) , INTENT(IN) :: dcpl_id
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INTEGER(SIZE_T), INTENT(IN) :: index
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INTEGER(HID_T) , INTENT(OUT) :: ds_id
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INTEGER, INTENT(OUT) :: hdferr
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!*****
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INTERFACE
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INTEGER(HID_T) FUNCTION h5pget_virtual_vspace(dcpl_id, index) BIND(C,NAME='H5Pget_virtual_vspace')
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IMPORT :: HID_T, SIZE_T
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IMPLICIT NONE
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INTEGER(HID_T) , INTENT(IN), VALUE :: dcpl_id
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INTEGER(SIZE_T), INTENT(IN), VALUE :: index
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END FUNCTION h5pget_virtual_vspace
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END INTERFACE
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ds_id = h5pget_virtual_vspace(dcpl_id, index)
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hdferr = 0
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IF(ds_id.LT.0) hdferr = -1
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END SUBROUTINE h5pget_virtual_vspace_f
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!****s*
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! NAME
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! h5pget_virtual_srcspace_f
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!
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! PURPOSE
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! Gets a dataspace identifier for the selection within the source dataset used in the mapping.
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!
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! INPUTS
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! dcpl_id - The identifier of the virtual dataset creation property list.
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! index - Mapping index.
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! The value of index is 0 (zero) or greater and less than count (0 ≤ index < count),
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! where count is the number of mappings returned by h5pget_virtual_count.
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!
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!
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! OUTPUTS
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! ds_id - dataspace identifier
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! hdferr - Returns 0 if successful and -1 if fails.
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!
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! AUTHOR
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! M. Scot Breitenfeld
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! Nov 2, 2015
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!
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! HISTORY
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!
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! SOURCE
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SUBROUTINE h5pget_virtual_srcspace_f(dcpl_id, index, ds_id, hdferr)
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IMPLICIT NONE
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INTEGER(HID_T) , INTENT(IN) :: dcpl_id
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INTEGER(SIZE_T), INTENT(IN) :: index
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INTEGER(HID_T) , INTENT(OUT) :: ds_id
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INTEGER, INTENT(OUT) :: hdferr
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!*****
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INTERFACE
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INTEGER(HID_T) FUNCTION h5pget_virtual_srcspace(dcpl_id, index) BIND(C,NAME='H5Pget_virtual_srcspace')
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IMPORT :: HID_T, SIZE_T
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IMPLICIT NONE
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INTEGER(HID_T) , INTENT(IN), VALUE :: dcpl_id
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INTEGER(SIZE_T), INTENT(IN), VALUE :: index
|
||||
END FUNCTION h5pget_virtual_srcspace
|
||||
END INTERFACE
|
||||
|
||||
ds_id = h5pget_virtual_srcspace(dcpl_id, index)
|
||||
|
||||
hdferr = 0
|
||||
IF(ds_id.LT.0) hdferr = -1
|
||||
|
||||
END SUBROUTINE h5pget_virtual_srcspace_f
|
||||
|
||||
!****s*
|
||||
! NAME
|
||||
! h5pget_virtual_filename_f
|
||||
!
|
||||
! PURPOSE
|
||||
! Gets the filename of a source dataset used in the mapping.
|
||||
!
|
||||
! INPUTS
|
||||
! dcpl_id - The identifier of the virtual dataset creation property list.
|
||||
! index - Mapping index.
|
||||
! The value of index is 0 (zero) or greater and less than count (0 ≤ index < count),
|
||||
! where count is the number of mappings returned by h5pget_virtual_count.
|
||||
!
|
||||
! OUTPUTS
|
||||
! name - A buffer containing the name of the file containing the source dataset.
|
||||
! hdferr - Returns 0 if successful and -1 if fails.
|
||||
!
|
||||
! Optional parameters:
|
||||
! name_len - The size of name needed to hold the filename. (OUT)
|
||||
!
|
||||
! AUTHOR
|
||||
! M. Scot Breitenfeld
|
||||
! Nov 2, 2015
|
||||
!
|
||||
! HISTORY
|
||||
!
|
||||
! SOURCE
|
||||
SUBROUTINE h5pget_virtual_filename_f(dcpl_id, index, name, hdferr, name_len)
|
||||
|
||||
IMPLICIT NONE
|
||||
INTEGER(HID_T) , INTENT(IN) :: dcpl_id
|
||||
INTEGER(SIZE_T) , INTENT(IN) :: index
|
||||
CHARACTER(LEN=*), INTENT(OUT) :: name
|
||||
INTEGER, INTENT(OUT) :: hdferr
|
||||
INTEGER(SIZE_T), OPTIONAL :: name_len
|
||||
!*****
|
||||
|
||||
CHARACTER(LEN=1,KIND=C_CHAR), DIMENSION(1:LEN(name)+1), TARGET :: c_name
|
||||
TYPE(C_PTR) :: f_ptr
|
||||
|
||||
INTERFACE
|
||||
INTEGER(SIZE_T) FUNCTION h5pget_virtual_filename(dcpl_id, index, name, size) BIND(C, NAME='H5Pget_virtual_filename')
|
||||
IMPORT :: HID_T, SIZE_T, C_PTR, C_CHAR
|
||||
IMPLICIT NONE
|
||||
INTEGER(HID_T) , INTENT(IN), VALUE :: dcpl_id
|
||||
INTEGER(SIZE_T), INTENT(IN), VALUE :: index
|
||||
TYPE(C_PTR), VALUE :: name
|
||||
INTEGER(SIZE_T), INTENT(IN), VALUE :: size
|
||||
END FUNCTION h5pget_virtual_filename
|
||||
END INTERFACE
|
||||
|
||||
hdferr = 0
|
||||
IF(PRESENT(name_len))THEN
|
||||
name_len = INT(h5pget_virtual_filename(dcpl_id, index, C_NULL_PTR, 0_SIZE_T), SIZE_T)
|
||||
IF(name_len.LT.0) hdferr = -1
|
||||
ELSE
|
||||
f_ptr = C_LOC(c_name(1)(1:1))
|
||||
|
||||
IF(INT(h5pget_virtual_filename(dcpl_id, index, f_ptr, INT(LEN(name)+1,SIZE_T)), SIZE_T).LT.0)THEN
|
||||
hdferr = -1
|
||||
ELSE
|
||||
CALL HD5c2fstring(name,c_name,LEN(name))
|
||||
ENDIF
|
||||
|
||||
ENDIF
|
||||
|
||||
|
||||
END SUBROUTINE h5pget_virtual_filename_f
|
||||
|
||||
!****s*
|
||||
! NAME
|
||||
! h5pget_virtual_dsetname_f
|
||||
!
|
||||
! PURPOSE
|
||||
! Gets the name of a source dataset used in the mapping.
|
||||
!
|
||||
! INPUTS
|
||||
! dcpl_id - The identifier of the virtual dataset creation property list.
|
||||
! index - Mapping index.
|
||||
! The value of index is 0 (zero) or greater and less than count (0 ≤ index < count),
|
||||
! where count is the number of mappings returned by h5pget_virtual_count.
|
||||
!
|
||||
! OUTPUTS
|
||||
! name - A buffer containing the name of the source dataset.
|
||||
! hdferr - Returns 0 if successful and -1 if fails.
|
||||
!
|
||||
! Optional parameters:
|
||||
! name_len - The size of name needed to hold the source dataset name. (OUT)
|
||||
!
|
||||
! AUTHOR
|
||||
! M. Scot Breitenfeld
|
||||
! January 28, 2016
|
||||
!
|
||||
! HISTORY
|
||||
!
|
||||
! SOURCE
|
||||
SUBROUTINE h5pget_virtual_dsetname_f(dcpl_id, index, name, hdferr, name_len)
|
||||
|
||||
IMPLICIT NONE
|
||||
INTEGER(HID_T) , INTENT(IN) :: dcpl_id
|
||||
INTEGER(SIZE_T) , INTENT(IN) :: index
|
||||
CHARACTER(LEN=*), INTENT(OUT) :: name
|
||||
INTEGER, INTENT(OUT) :: hdferr
|
||||
INTEGER(SIZE_T), OPTIONAL :: name_len
|
||||
!*****
|
||||
|
||||
CHARACTER(LEN=1,KIND=C_CHAR), DIMENSION(1:LEN(name)+1), TARGET :: c_name
|
||||
TYPE(C_PTR) :: f_ptr
|
||||
|
||||
INTERFACE
|
||||
INTEGER(SIZE_T) FUNCTION h5pget_virtual_dsetname(dcpl_id, index, name, size) BIND(C, NAME='H5Pget_virtual_dsetname')
|
||||
IMPORT :: HID_T, SIZE_T, C_PTR, C_CHAR
|
||||
IMPLICIT NONE
|
||||
INTEGER(HID_T) , INTENT(IN), VALUE :: dcpl_id
|
||||
INTEGER(SIZE_T), INTENT(IN), VALUE :: index
|
||||
TYPE(C_PTR), VALUE :: name
|
||||
INTEGER(SIZE_T), INTENT(IN), VALUE :: size
|
||||
END FUNCTION h5pget_virtual_dsetname
|
||||
END INTERFACE
|
||||
|
||||
hdferr = 0
|
||||
IF(PRESENT(name_len))THEN
|
||||
name_len = INT(h5pget_virtual_dsetname(dcpl_id, index, C_NULL_PTR, 0_SIZE_T), SIZE_T)
|
||||
IF(name_len.LT.0) hdferr = -1
|
||||
ELSE
|
||||
f_ptr = C_LOC(c_name(1)(1:1))
|
||||
|
||||
IF(INT(h5pget_virtual_dsetname(dcpl_id, index, f_ptr, INT(LEN(name)+1,SIZE_T)), SIZE_T).LT.0)THEN
|
||||
hdferr = -1
|
||||
ELSE
|
||||
CALL HD5c2fstring(name,c_name,LEN(name))
|
||||
ENDIF
|
||||
|
||||
ENDIF
|
||||
|
||||
END SUBROUTINE h5pget_virtual_dsetname_f
|
||||
|
||||
END MODULE H5P
|
||||
|
||||
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
! MODULE H5R
|
||||
!
|
||||
! FILE
|
||||
! fortran/src/H5Rff.f90
|
||||
! fortran/src/H5Rff.F90
|
||||
!
|
||||
! PURPOSE
|
||||
! This file contains Fortran interfaces for H5R functions.
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
! MODULE H5S
|
||||
!
|
||||
! FILE
|
||||
! fortran/src/H5Sff.f90
|
||||
! fortran/src/H5Sff.F90
|
||||
!
|
||||
! PURPOSE
|
||||
! This file contains Fortran interfaces for H5S functions.
|
||||
@ -41,7 +41,7 @@
|
||||
!*****
|
||||
|
||||
MODULE H5S
|
||||
USE, INTRINSIC :: ISO_C_BINDING, ONLY : C_PTR, C_CHAR
|
||||
USE, INTRINSIC :: ISO_C_BINDING, ONLY : C_PTR, C_CHAR, C_INT
|
||||
USE H5GLOBAL
|
||||
|
||||
CONTAINS
|
||||
@ -1751,4 +1751,118 @@ CONTAINS
|
||||
|
||||
END SUBROUTINE h5sextent_equal_f
|
||||
|
||||
!
|
||||
!****s* H5S/h5sget_regular_hyperslab_f
|
||||
!
|
||||
! NAME
|
||||
! h5sget_regular_hyperslab_f
|
||||
!
|
||||
! PURPOSE
|
||||
! Retrieves a regular hyperslab selection.
|
||||
!
|
||||
! INPUTS
|
||||
! space_id - The identifier of the dataspace.
|
||||
! OUTPUTS
|
||||
! start - Offset of the start of the regular hyperslab.
|
||||
! stride - Stride of the regular hyperslab.
|
||||
! count - Number of blocks in the regular hyperslab.
|
||||
! block - Size of a block in the regular hyperslab.
|
||||
! hdferr - Returns 0 if successful and -1 if fails.
|
||||
!
|
||||
! AUTHOR
|
||||
! M. Scot Breitenfeld
|
||||
! January, 28 2016
|
||||
! SOURCE
|
||||
SUBROUTINE h5sget_regular_hyperslab_f(space_id, start, stride, count, block, hdferr)
|
||||
|
||||
IMPLICIT NONE
|
||||
INTEGER(HID_T), INTENT(IN) :: space_id
|
||||
INTEGER(HSIZE_T), INTENT(OUT), DIMENSION(*), TARGET :: start
|
||||
INTEGER(HSIZE_T), INTENT(OUT), DIMENSION(*), TARGET :: stride
|
||||
INTEGER(HSIZE_T), INTENT(OUT), DIMENSION(*), TARGET :: count
|
||||
INTEGER(HSIZE_T), INTENT(OUT), DIMENSION(*), TARGET :: block
|
||||
INTEGER, INTENT(OUT) :: hdferr
|
||||
!*****
|
||||
TYPE(C_PTR) :: start_c, stride_c, count_c, block_c
|
||||
INTEGER(C_INT) :: n
|
||||
|
||||
INTERFACE
|
||||
INTEGER FUNCTION h5sget_regular_hyperslab(space_id, start, stride, count, block) BIND(C,NAME='H5Sget_regular_hyperslab')
|
||||
IMPORT :: HID_T, C_PTR
|
||||
IMPLICIT NONE
|
||||
INTEGER(HID_T), INTENT(IN), VALUE :: space_id
|
||||
TYPE(C_PTR), VALUE :: start, stride, count, block
|
||||
END FUNCTION h5sget_regular_hyperslab
|
||||
END INTERFACE
|
||||
|
||||
hdferr = 0
|
||||
|
||||
start_c = C_LOC(start(1))
|
||||
stride_c = C_LOC(stride(1))
|
||||
count_c = C_LOC(count(1))
|
||||
block_c = C_LOC(block(1))
|
||||
|
||||
IF(INT(h5sget_regular_hyperslab(space_id, start_c, stride_c, count_c, block_c)).LT.0) hdferr = -1
|
||||
|
||||
! Reverse the C arrays description values of the hyperslab because
|
||||
! the hyperslab was for a C stored hyperslab
|
||||
|
||||
CALL H5Sget_simple_extent_ndims_f(space_id,n,hdferr)
|
||||
IF(hdferr.LT.0.OR.n.EQ.0)THEN
|
||||
hdferr=-1
|
||||
ELSE
|
||||
start(1:n) = start(n:1:-1)
|
||||
stride(1:n) = stride(n:1:-1)
|
||||
count(1:n) = count(n:1:-1)
|
||||
block(1:n) = block(n:1:-1)
|
||||
ENDIF
|
||||
|
||||
END SUBROUTINE h5sget_regular_hyperslab_f
|
||||
|
||||
!****s* H5S/h5sis_regular_hyperslab_f
|
||||
!
|
||||
! NAME
|
||||
! h5sis_regular_hyperslab_f
|
||||
!
|
||||
! PURPOSE
|
||||
! Retrieves a regular hyperslab selection.
|
||||
!
|
||||
! INPUTS
|
||||
! space_id - The identifier of the dataspace.
|
||||
! OUTPUTS
|
||||
! IsRegular - TRUE or FALSE for hyperslab selection if successful.
|
||||
! hdferr - Returns 0 if successful and -1 if fails.
|
||||
!
|
||||
! AUTHOR
|
||||
! M. Scot Breitenfeld
|
||||
! January, 28 2016
|
||||
! SOURCE
|
||||
SUBROUTINE h5sis_regular_hyperslab_f(space_id, IsRegular, hdferr)
|
||||
IMPLICIT NONE
|
||||
INTEGER(HID_T), INTENT(IN) :: space_id
|
||||
LOGICAL :: IsRegular
|
||||
INTEGER, INTENT(OUT) :: hdferr
|
||||
!*****
|
||||
INTEGER(C_INT) :: status
|
||||
|
||||
INTERFACE
|
||||
INTEGER(C_INT) FUNCTION H5Sis_regular_hyperslab(space_id) BIND(C,NAME='H5Sis_regular_hyperslab')
|
||||
IMPORT :: HID_T, C_INT
|
||||
IMPLICIT NONE
|
||||
INTEGER(HID_T), INTENT(IN), VALUE :: space_id
|
||||
END FUNCTION H5Sis_regular_hyperslab
|
||||
END INTERFACE
|
||||
|
||||
status = H5Sis_regular_hyperslab(space_id)
|
||||
|
||||
hdferr = 0
|
||||
IsRegular = .FALSE.
|
||||
IF(status.GT.0)THEN
|
||||
IsRegular = .TRUE.
|
||||
ELSE IF(status.LT.0)THEN
|
||||
hdferr = -1
|
||||
ENDIF
|
||||
|
||||
END SUBROUTINE H5Sis_regular_hyperslab_f
|
||||
|
||||
END MODULE H5S
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
! Executable: H5_buildiface
|
||||
!
|
||||
! FILE
|
||||
! fortran/src/H5_buildiface.f90
|
||||
! fortran/src/H5_buildiface.F90
|
||||
!
|
||||
! PURPOSE
|
||||
! This stand alone program is used at build time to generate the module
|
||||
|
||||
@ -476,6 +476,10 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags,
|
||||
h5d_flags[22] = (int_f)H5D_MPIO_CHUNK_COLLECTIVE;
|
||||
h5d_flags[23] = (int_f)H5D_MPIO_CHUNK_MIXED;
|
||||
h5d_flags[24] = (int_f)H5D_MPIO_CONTIGUOUS_COLLECTIVE;
|
||||
h5d_flags[25] = (int_f)H5D_VDS_ERROR;
|
||||
h5d_flags[26] = (int_f)H5D_VDS_FIRST_MISSING;
|
||||
h5d_flags[27] = (int_f)H5D_VDS_LAST_AVAILABLE;
|
||||
h5d_flags[28] = (int_f)H5D_VIRTUAL;
|
||||
|
||||
/*
|
||||
* H5E flags
|
||||
|
||||
@ -22,7 +22,7 @@
|
||||
#include "H5f90i.h"
|
||||
#include "H5f90proto.h"
|
||||
|
||||
/* Constants used in H5Rff.f90 and H5Rf.c files */
|
||||
/* Constants used in H5Rff.F90 and H5Rf.c files */
|
||||
#define REF_REG_BUF_LEN_F 3
|
||||
|
||||
/* Constants used in H5Gf.c files */
|
||||
|
||||
@ -4,7 +4,7 @@
|
||||
! MODULE H5GLOBAL
|
||||
!
|
||||
! FILE
|
||||
! src/fortran/H5f90global.f90
|
||||
! src/fortran/H5f90global.F90
|
||||
!
|
||||
! PURPOSE
|
||||
! This module is used to pass C stubs for H5 Fortran APIs. The C stubs are
|
||||
@ -46,12 +46,19 @@ MODULE H5GLOBAL
|
||||
|
||||
IMPLICIT NONE
|
||||
|
||||
! Enumerate data type that is interoperable with C.
|
||||
ENUM, BIND(C)
|
||||
ENUMERATOR :: enum_dtype
|
||||
END ENUM
|
||||
INTEGER, PARAMETER :: ENUM_T = KIND(enum_dtype)
|
||||
|
||||
|
||||
! Definitions for reference datatypes.
|
||||
! If you change the value of these parameters, do not forget to change corresponding
|
||||
! values in the H5f90.h file.
|
||||
INTEGER, PARAMETER :: REF_REG_BUF_LEN = 3
|
||||
|
||||
! Parameters used in the function 'h5kind_to_type' located in H5_ff.f90.
|
||||
! Parameters used in the function 'h5kind_to_type' located in H5_ff.F90.
|
||||
! The flag is used to tell the function whether the kind input variable
|
||||
! is for a REAL or INTEGER data type.
|
||||
|
||||
@ -366,11 +373,11 @@ MODULE H5GLOBAL
|
||||
EQUIVALENCE(H5G_flags(10), H5G_STORAGE_TYPE_SYMBOL_TABLE_F)
|
||||
EQUIVALENCE(H5G_flags(11), H5G_STORAGE_TYPE_COMPACT_F)
|
||||
EQUIVALENCE(H5G_flags(12), H5G_STORAGE_TYPE_DENSE_F)
|
||||
|
||||
!
|
||||
! H5D flags declaration
|
||||
!
|
||||
|
||||
INTEGER, PARAMETER :: H5D_FLAGS_LEN = 25
|
||||
INTEGER, PARAMETER :: H5D_FLAGS_LEN = 29
|
||||
INTEGER :: H5D_flags(H5D_FLAGS_LEN)
|
||||
INTEGER, PARAMETER :: H5D_SIZE_FLAGS_LEN = 2
|
||||
INTEGER(SIZE_T) :: H5D_size_flags(H5D_SIZE_FLAGS_LEN)
|
||||
@ -418,6 +425,10 @@ MODULE H5GLOBAL
|
||||
INTEGER :: H5D_MPIO_CHUNK_COLLECTIVE_F
|
||||
INTEGER :: H5D_MPIO_CHUNK_MIXED_F
|
||||
INTEGER :: H5D_MPIO_CONTIG_COLLECTIVE_F
|
||||
INTEGER :: H5D_VDS_ERROR_F
|
||||
INTEGER :: H5D_VDS_FIRST_MISSING_F
|
||||
INTEGER :: H5D_VDS_LAST_AVAILABLE_F
|
||||
INTEGER :: H5D_VIRTUAL_F
|
||||
|
||||
EQUIVALENCE(H5D_flags(1), H5D_COMPACT_F)
|
||||
EQUIVALENCE(H5D_flags(2), H5D_CONTIGUOUS_F)
|
||||
@ -449,6 +460,10 @@ MODULE H5GLOBAL
|
||||
EQUIVALENCE(H5D_flags(23), H5D_MPIO_CHUNK_COLLECTIVE_F)
|
||||
EQUIVALENCE(H5D_flags(24), H5D_MPIO_CHUNK_MIXED_F)
|
||||
EQUIVALENCE(H5D_flags(25), H5D_MPIO_CONTIG_COLLECTIVE_F)
|
||||
EQUIVALENCE(H5D_flags(26), H5D_VDS_ERROR_F)
|
||||
EQUIVALENCE(H5D_flags(27), H5D_VDS_FIRST_MISSING_F)
|
||||
EQUIVALENCE(H5D_flags(28), H5D_VDS_LAST_AVAILABLE_F)
|
||||
EQUIVALENCE(H5D_flags(29), H5D_VIRTUAL_F)
|
||||
|
||||
EQUIVALENCE(H5D_size_flags(1), H5D_CHUNK_CACHE_NSLOTS_DFLT_F)
|
||||
EQUIVALENCE(H5D_size_flags(2), H5D_CHUNK_CACHE_NBYTES_DFLT_F)
|
||||
|
||||
58
fortran/src/H5fortkit.F90
Normal file
58
fortran/src/H5fortkit.F90
Normal file
@ -0,0 +1,58 @@
|
||||
!****h* H5fortkit/H5fortkit
|
||||
! PURPOSE
|
||||
! Routines to deal with C-FORTRAN issues.
|
||||
!
|
||||
! COPYRIGHT
|
||||
! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
|
||||
! Copyright by The HDF Group. *
|
||||
! Copyright by the Board of Trustees of the University of Illinois. *
|
||||
! All rights reserved. *
|
||||
! *
|
||||
! This file is part of HDF5. The full HDF5 copyright notice, including *
|
||||
! terms governing use, modification, and redistribution, is contained in *
|
||||
! the files COPYING and Copyright.html. COPYING can be found at the root *
|
||||
! of the source code distribution tree; Copyright.html can be found at the *
|
||||
! root level of an installed copy of the electronic HDF5 document set and *
|
||||
! is linked from the top-level documents page. It can also be found at *
|
||||
! http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
|
||||
! access to either file, you may request a copy from help@hdfgroup.org. *
|
||||
! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
|
||||
!
|
||||
MODULE H5fortkit
|
||||
|
||||
CONTAINS
|
||||
|
||||
!****if* H5fortkit/HD5c2fstring
|
||||
! NAME
|
||||
! HD5c2fstring
|
||||
! INPUTS
|
||||
! cstring - C string stored as a string array of size 'len' of string size LEN=1
|
||||
! len - length of Fortran string
|
||||
! OUTPUT
|
||||
! fstring - Fortran string array of LEN=1
|
||||
! PURPOSE
|
||||
! Copies a Fortran array of strings having a length of one to a fortran string and removes the C Null
|
||||
! terminator. The Null terminator is returned from C when calling the C APIs directly.
|
||||
!
|
||||
! The fortran standard does not allow C_LOC to be used on a character string of
|
||||
! length greater than one, which is why we use the array of characters instead.
|
||||
!
|
||||
! SOURCE
|
||||
SUBROUTINE HD5c2fstring(fstring,cstring,len)
|
||||
!*****
|
||||
IMPLICIT NONE
|
||||
|
||||
INTEGER :: i
|
||||
INTEGER :: len
|
||||
CHARACTER(LEN=len) :: fstring
|
||||
CHARACTER(LEN=1), DIMENSION(1:len) :: cstring
|
||||
|
||||
fstring = ''
|
||||
DO i = 1, len
|
||||
IF (cstring(i)(1:1)==CHAR(0)) EXIT
|
||||
fstring(i:i) = cstring(i)(1:1)
|
||||
END DO
|
||||
|
||||
END SUBROUTINE HD5c2fstring
|
||||
|
||||
END MODULE H5fortkit
|
||||
@ -4,7 +4,7 @@
|
||||
! MODULE HDF5
|
||||
!
|
||||
! FILE
|
||||
! src/fortran/src/HDF5.f90
|
||||
! src/fortran/src/HDF5.F90
|
||||
!
|
||||
! PURPOSE
|
||||
! This is the main module used for linking to the Fortran HDF library.
|
||||
|
||||
@ -46,9 +46,9 @@ endif
|
||||
libhdf5_fortran_la_SOURCES=H5f90global.F90 \
|
||||
H5fortran_types.F90 H5_ff.F90 H5Aff.F90 H5Dff.F90 H5Eff.F90 \
|
||||
H5Fff.F90 H5Gff.F90 H5Iff.F90 H5Lff.F90 H5Off.F90 H5Pff.F90 H5Rff.F90 H5Sff.F90 \
|
||||
H5Tff.F90 H5Zff.F90 H5_gen.f90 \
|
||||
H5Tff.F90 H5Zff.F90 H5_gen.F90 H5fortkit.F90 \
|
||||
H5f90kit.c H5_f.c H5Af.c H5Df.c H5Ef.c H5Ff.c H5Gf.c \
|
||||
H5If.c H5Lf.c H5Of.c H5Pf.c H5Rf.c H5Sf.c H5Tf.c H5Zf.c HDF5.f90
|
||||
H5If.c H5Lf.c H5Of.c H5Pf.c H5Rf.c H5Sf.c H5Tf.c H5Zf.c HDF5.F90
|
||||
|
||||
# HDF5 Fortran library depends on HDF5 Library.
|
||||
libhdf5_fortran_la_LIBADD=$(LIBHDF5)
|
||||
@ -153,7 +153,7 @@ H5Gff.lo: $(srcdir)/H5Gff.F90 H5f90global.lo
|
||||
H5Iff.lo: $(srcdir)/H5Iff.F90 H5f90global.lo
|
||||
H5Lff.lo: $(srcdir)/H5Lff.F90 H5f90global.lo
|
||||
H5Off.lo: $(srcdir)/H5Off.F90 H5f90global.lo
|
||||
H5Pff.lo: $(srcdir)/H5Pff.F90 H5f90global.lo
|
||||
H5Pff.lo: $(srcdir)/H5Pff.F90 H5f90global.lo H5fortkit.lo
|
||||
H5Rff.lo: $(srcdir)/H5Rff.F90 H5f90global.lo
|
||||
H5Sff.lo: $(srcdir)/H5Sff.F90 H5f90global.lo
|
||||
H5Tff.lo: $(srcdir)/H5Tff.F90 H5f90global.lo
|
||||
|
||||
@ -318,6 +318,16 @@ H5P_mp_H5PREGISTER_PTR
|
||||
H5P_mp_H5PINSERT_PTR
|
||||
H5P_mp_H5PGET_FILE_IMAGE_F
|
||||
H5P_mp_H5PSET_FILE_IMAGE_F
|
||||
H5P_mp_H5PSET_VIRTUAL_VIEW_F
|
||||
H5P_mp_H5PGET_VIRTUAL_VIEW_F
|
||||
H5P_mp_H5PSET_VIRTUAL_PRINTF_GAP_F
|
||||
H5P_mp_H5PGET_VIRTUAL_PRINTF_GAP_F
|
||||
H5P_mp_H5PSET_VIRTUAL_F
|
||||
H5P_mp_H5PGET_VIRTUAL_COUNT_F
|
||||
H5P_mp_H5PGET_VIRTUAL_VSPACE_F
|
||||
H5P_mp_H5PGET_VIRTUAL_SRCSPACE_F
|
||||
H5P_mp_H5PGET_VIRTUAL_FILENAME_F
|
||||
H5P_mp_H5PGET_VIRTUAL_DSETNAME_F
|
||||
; Parallel
|
||||
@H5_NOPAREXP@H5P_mp_H5PSET_FAPL_MPIO_F
|
||||
@H5_NOPAREXP@H5P_mp_H5PGET_FAPL_MPIO_F
|
||||
@ -367,6 +377,8 @@ H5S_mp_H5SGET_SELECT_TYPE_F
|
||||
H5S_mp_H5SDECODE_F
|
||||
H5S_mp_H5SENCODE_F
|
||||
H5S_mp_H5SEXTENT_EQUAL_F
|
||||
H5S_mp_H5SGET_REGULAR_HYPERSLAB_F
|
||||
H5S_mp_H5SIS_REGULAR_HYPERSLAB_F
|
||||
; H5T
|
||||
H5T_mp_H5TOPEN_F
|
||||
H5T_mp_H5TCOMMIT_F
|
||||
|
||||
@ -174,6 +174,14 @@ PROGRAM fortranlibtest_F03
|
||||
CALL test_get_file_image(ret_total_error)
|
||||
CALL write_test_status(ret_total_error, ' Testing get file image ', total_error)
|
||||
|
||||
! write(*,*)
|
||||
! write(*,*) '========================================='
|
||||
! write(*,*) 'Testing VDS '
|
||||
! write(*,*) '========================================='
|
||||
|
||||
ret_total_error = 0
|
||||
CALL test_vds(ret_total_error)
|
||||
CALL write_test_status(ret_total_error, ' Testing vds ', total_error)
|
||||
|
||||
WRITE(*,*)
|
||||
|
||||
|
||||
@ -617,4 +617,476 @@ SUBROUTINE external_test_offset(cleanup,total_error)
|
||||
CALL check("h5_cleanup_f", error, total_error)
|
||||
|
||||
END SUBROUTINE external_test_offset
|
||||
|
||||
!****h* root/fortran/test/tH5P_F03.f90
|
||||
!
|
||||
! NAME
|
||||
! test_vds
|
||||
!
|
||||
! FUNCTION
|
||||
! Tests VDS API wrappers
|
||||
!
|
||||
! RETURNS:
|
||||
! Success: 0
|
||||
! Failure: number of errors
|
||||
!
|
||||
! FORTRAN Programmer: M. Scot Breitenfeld
|
||||
! February 1, 2016
|
||||
!
|
||||
!-------------------------------------------------------------------------
|
||||
!
|
||||
SUBROUTINE test_vds(total_error)
|
||||
|
||||
USE ISO_C_BINDING
|
||||
IMPLICIT NONE
|
||||
|
||||
INTEGER, INTENT(INOUT) :: total_error
|
||||
|
||||
INTEGER, PARAMETER :: int_kind_8 = SELECTED_INT_KIND(9) !should map to INTEGER*4 on most modern processors
|
||||
INTEGER, PARAMETER :: int_kind_16 = SELECTED_INT_KIND(18) !should map to INTEGER*8 on most modern processors
|
||||
|
||||
CHARACTER(LEN=6), PARAMETER :: VFILENAME="vds.h5"
|
||||
CHARACTER(LEN=3), PARAMETER :: DATASET="VDS"
|
||||
INTEGER :: VDSDIM0
|
||||
INTEGER, PARAMETER :: VDSDIM1 = 10
|
||||
INTEGER, PARAMETER :: VDSDIM2 = 15
|
||||
|
||||
INTEGER :: DIM0
|
||||
INTEGER, PARAMETER :: DIM0_1= 4 ! Initial size of the source datasets
|
||||
INTEGER, PARAMETER :: DIM1 = 10
|
||||
INTEGER, PARAMETER :: DIM2 = 15
|
||||
INTEGER, PARAMETER :: RANK = 3
|
||||
INTEGER(hsize_t), PARAMETER :: PLANE_STRIDE = 4
|
||||
|
||||
CHARACTER(LEN=4), DIMENSION(1:PLANE_STRIDE) :: SRC_FILE = (/"a.h5","b.h5","c.h5","d.h5"/)
|
||||
CHARACTER(LEN=3), DIMENSION(1:PLANE_STRIDE) :: SRC_DATASET = (/"AAA","BBB","CCC","DDD"/)
|
||||
|
||||
|
||||
INTEGER(hid_t) :: vfile, file, src_space, mem_space, vspace, vdset, dset !Handles
|
||||
INTEGER(hid_t) :: dcpl, dapl
|
||||
INTEGER :: status, error
|
||||
INTEGER(hsize_t), DIMENSION(1:3) :: vdsdims = (/4*DIM0_1, VDSDIM1, VDSDIM2/), &
|
||||
vdsdims_max, &
|
||||
dims = (/DIM0_1, DIM1, DIM2/), &
|
||||
memdims = (/DIM0_1, DIM1, DIM2/), &
|
||||
extdims = (/0, DIM1, DIM2/), & ! Dimensions of the extended source datasets
|
||||
chunk_dims = (/DIM0_1, DIM1, DIM2/), &
|
||||
dims_max, &
|
||||
vdsdims_out, vdsdims_max_out, &
|
||||
start, & ! Hyperslab parameters
|
||||
stride, &
|
||||
count, &
|
||||
src_count, block
|
||||
INTEGER(hsize_t), DIMENSION(1:2,1:3) :: vdsdims_out_correct
|
||||
|
||||
INTEGER(hsize_t), DIMENSION(1:3) :: start_out, & !Hyperslab PARAMETER out
|
||||
stride_out, count_out, count_correct, block_out
|
||||
INTEGER(hsize_t), DIMENSION(1:3,1:PLANE_STRIDE) :: start_correct
|
||||
|
||||
INTEGER :: i, j
|
||||
INTEGER :: layout ! Storage layout
|
||||
INTEGER(size_t) :: num_map ! Number of mappings
|
||||
INTEGER(size_t) :: len ! Length of the string also a RETURN value
|
||||
CHARACTER(LEN=180) :: filename
|
||||
! Different sized character buffers
|
||||
CHARACTER(len=LEN(SRC_FILE(1))-3) :: SRC_FILE_LEN_TINY
|
||||
CHARACTER(len=LEN(SRC_FILE(1))-1) :: SRC_FILE_LEN_SMALL
|
||||
CHARACTER(len=LEN(SRC_FILE(1))) :: SRC_FILE_LEN_EXACT
|
||||
CHARACTER(len=LEN(SRC_FILE(1))+1) :: SRC_FILE_LEN_LARGE
|
||||
CHARACTER(len=LEN(SRC_FILE(1))+10) :: SRC_FILE_LEN_HUGE
|
||||
CHARACTER(len=LEN(SRC_DATASET(1))) :: SRC_DATASET_LEN_EXACT
|
||||
|
||||
INTEGER(HID_T) :: space_out
|
||||
|
||||
INTEGER :: s_type, virtual_view
|
||||
INTEGER :: type1, type2
|
||||
|
||||
CHARACTER(LEN=180) :: dsetname
|
||||
INTEGER, DIMENSION(DIM0_1*DIM1*DIM2), TARGET :: wdata
|
||||
TYPE(C_PTR) :: f_ptr
|
||||
INTEGER(SIZE_T) :: nsize
|
||||
LOGICAL :: IsRegular
|
||||
INTEGER(HSIZE_T) :: gap_size
|
||||
|
||||
! For testing against
|
||||
vdsdims_out_correct(1,1) = DIM0_1*5
|
||||
vdsdims_out_correct(2,1) = DIM0_1*8
|
||||
vdsdims_out_correct(1:2,2) = VDSDIM1
|
||||
vdsdims_out_correct(1:2,3) = VDSDIM2
|
||||
|
||||
VDSDIM0 = H5S_UNLIMITED_F
|
||||
DIM0 = H5S_UNLIMITED_F
|
||||
vdsdims_max = (/VDSDIM0, VDSDIM1, VDSDIM2/)
|
||||
dims_max = (/DIM0, DIM1, DIM2/)
|
||||
|
||||
!
|
||||
! Create source files and datasets.
|
||||
!
|
||||
DO i = 1, PLANE_STRIDE
|
||||
!
|
||||
! Initialize data for i-th source dataset.
|
||||
DO j = 1, DIM0_1*DIM1*DIM2
|
||||
wdata(j) = i
|
||||
ENDDO
|
||||
!
|
||||
! Create the source files and datasets. Write data to each dataset and
|
||||
! close all resources.
|
||||
CALL h5fcreate_f(SRC_FILE(i), H5F_ACC_TRUNC_F, file, status)
|
||||
CALL check("h5fcreate_f", error, total_error)
|
||||
|
||||
CALL h5screate_simple_f(RANK, dims, src_space, error, dims_max)
|
||||
CALL check("h5screate_simple_f", error, total_error)
|
||||
CALL h5pcreate_f(H5P_DATASET_CREATE_F, dcpl, error)
|
||||
CALL check("h5pcreate_f", error, total_error)
|
||||
CALL h5pset_chunk_f(dcpl, RANK, chunk_dims, error)
|
||||
CALL check("h5pset_chunk_f",error, total_error)
|
||||
|
||||
CALL h5dcreate_f(file, SRC_DATASET(i), H5T_NATIVE_INTEGER, src_space, dset, error, dcpl, H5P_DEFAULT_F, H5P_DEFAULT_F)
|
||||
CALL check("h5dcreate_f",error, total_error)
|
||||
f_ptr = C_LOC(wdata(1))
|
||||
CALL H5Dwrite_f(dset, H5T_NATIVE_INTEGER, f_ptr, error)
|
||||
CALL check("H5Dwrite_f",error, total_error)
|
||||
CALL H5Sclose_f(src_space, error)
|
||||
CALL check("H5Sclose_f",error, total_error)
|
||||
CALL H5Pclose_f(dcpl, error)
|
||||
CALL check("H5Pclose_f",error, total_error)
|
||||
CALL H5Dclose_f(dset, error)
|
||||
CALL check("H5Dclose_f",error, total_error)
|
||||
CALL H5Fclose_f(file, error)
|
||||
CALL check("H5Fclose_f",error, total_error)
|
||||
ENDDO
|
||||
|
||||
CALL h5fcreate_f(VFILENAME, H5F_ACC_TRUNC_F, vfile, error)
|
||||
CALL check("h5fcreate_f", error, total_error)
|
||||
|
||||
! Create VDS dataspace.
|
||||
CALL H5Screate_simple_f(RANK, vdsdims, vspace, error, vdsdims_max)
|
||||
CALL check("H5Screate_simple_f", error, total_error)
|
||||
|
||||
! Create dataspaces for the source dataset.
|
||||
CALL H5Screate_simple_f(RANK, dims, src_space, error, dims_max)
|
||||
CALL check("H5Screate_simple_f", error, total_error)
|
||||
|
||||
! Create VDS creation property
|
||||
CALL H5Pcreate_f (H5P_DATASET_CREATE_F, dcpl, error)
|
||||
CALL check("H5Pcreate_f", error, total_error)
|
||||
|
||||
! Initialize hyperslab values
|
||||
start(1:3) = 0
|
||||
stride(1:3) = (/PLANE_STRIDE,1_hsize_t,1_hsize_t/) ! we will select every fifth plane in VDS
|
||||
count(1:3) = (/H5S_UNLIMITED_F,1_hsize_t,1_hsize_t/)
|
||||
src_count(1:3) = (/H5S_UNLIMITED_F,1_hsize_t,1_hsize_t/)
|
||||
block(1:3) = (/1, DIM1, DIM2/)
|
||||
|
||||
!
|
||||
! Build the mappings
|
||||
!
|
||||
start_correct = 0
|
||||
CALL H5Sselect_hyperslab_f(src_space, H5S_SELECT_SET_F, start, src_count, error, block=block)
|
||||
CALL check("H5Sselect_hyperslab_f", error, total_error)
|
||||
DO i = 1, PLANE_STRIDE
|
||||
start_correct(1,i) = start(1)
|
||||
CALL H5Sselect_hyperslab_f(vspace, H5S_SELECT_SET_F, start, count, error, stride=stride, block=block)
|
||||
CALL check("H5Sselect_hyperslab_f", error, total_error)
|
||||
|
||||
IF(i.eq.1)THEN ! check src_file and src_dataset with trailing blanks
|
||||
CALL H5Pset_virtual_f (dcpl, vspace, SRC_FILE(i)//" ", SRC_DATASET(i)//" ", src_space, error)
|
||||
ELSE
|
||||
CALL H5Pset_virtual_f (dcpl, vspace, SRC_FILE(i), SRC_DATASET(i), src_space, error)
|
||||
ENDIF
|
||||
CALL check("H5Pset_virtual_f", error, total_error)
|
||||
start(1) = start(1) + 1
|
||||
ENDDO
|
||||
|
||||
CALL H5Sselect_none_f(vspace, error)
|
||||
CALL check("H5Sselect_none_f", error, total_error)
|
||||
|
||||
! Create a virtual dataset
|
||||
CALL H5Dcreate_f(vfile, DATASET, H5T_NATIVE_INTEGER, vspace, vdset, error, dcpl, H5P_DEFAULT_F, H5P_DEFAULT_F)
|
||||
CALL check("H5Dcreate_f", error, total_error)
|
||||
CALL H5Sclose_f(vspace, error)
|
||||
CALL check("H5Sclose_f", error, total_error)
|
||||
CALL H5Sclose_f(src_space, error)
|
||||
CALL check("H5Sclose_f", error, total_error)
|
||||
CALL H5Pclose_f(dcpl, error)
|
||||
CALL check("H5Pclose_f", error, total_error)
|
||||
|
||||
! Let's add data to the source datasets and check new dimensions for VDS
|
||||
! We will add only one plane to the first source dataset, two planes to the
|
||||
! second one, three to the third, and four to the forth.
|
||||
|
||||
DO i = 1, PLANE_STRIDE
|
||||
!
|
||||
! Initialize data for i-th source dataset.
|
||||
DO j = 1, i*DIM1*DIM2
|
||||
wdata(j) = 10*i
|
||||
ENDDO
|
||||
|
||||
!
|
||||
! Open the source files and datasets. Append data to each dataset and
|
||||
! close all resources.
|
||||
CALL H5Fopen_f (SRC_FILE(i), H5F_ACC_RDWR_F, file, error)
|
||||
CALL check("H5Fopen_f", error, total_error)
|
||||
CALL H5Dopen_f (file, SRC_DATASET(i), dset, error)
|
||||
CALL check("H5Dopen_f", error, total_error)
|
||||
extdims(1) = DIM0_1+i
|
||||
CALL H5Dset_extent_f(dset, extdims, error)
|
||||
CALL check("H5Dset_extent_f", error, total_error)
|
||||
CALL H5Dget_space_f(dset, src_space, error)
|
||||
CALL check("H5Dget_space_f", error, total_error)
|
||||
|
||||
start(1:3) = (/DIM0_1,0,0/)
|
||||
count(1:3) = 1
|
||||
block(1:3) = (/i, DIM1, DIM2/)
|
||||
|
||||
memdims(1) = i
|
||||
|
||||
CALL H5Screate_simple_f(RANK, memdims, mem_space, error)
|
||||
CALL check("H5Screate_simple_f", error, total_error)
|
||||
|
||||
CALL H5Sselect_hyperslab_f(src_space, H5S_SELECT_SET_F, start,count, error,block=block)
|
||||
CALL check("H5Sselect_hyperslab_f", error, total_error)
|
||||
f_ptr = C_LOC(wdata(1))
|
||||
CALL H5Dwrite_f(dset, H5T_NATIVE_INTEGER, f_ptr, error, mem_space, src_space, H5P_DEFAULT_F)
|
||||
CALL check("H5Dwrite_f", error, total_error)
|
||||
CALL H5Sclose_f(src_space, error)
|
||||
CALL check("H5Sclose_f", error, total_error)
|
||||
call H5Dclose_f(dset, error)
|
||||
CALL check("H5Dclose_f", error, total_error)
|
||||
call H5Fclose_f(file, error)
|
||||
CALL check("H5Fclose_f", error, total_error)
|
||||
ENDDO
|
||||
|
||||
call H5Dclose_f(vdset, error)
|
||||
CALL check("H5Dclose_f", error, total_error)
|
||||
call H5Fclose_f(vfile, error)
|
||||
CALL check("H5Fclose_f", error, total_error)
|
||||
|
||||
!
|
||||
! begin the read section
|
||||
!
|
||||
! Open file and dataset using the default properties.
|
||||
CALL H5Fopen_f(VFILENAME, H5F_ACC_RDONLY_F, vfile, error)
|
||||
CALL check("H5Fopen_f", error, total_error)
|
||||
|
||||
!
|
||||
! Open VDS using different access properties to use max or
|
||||
! min extents depending on the sizes of the underlying datasets
|
||||
CALL H5Pcreate_f(H5P_DATASET_ACCESS_F, dapl, error)
|
||||
CALL check("H5Pcreate_f", error, total_error)
|
||||
|
||||
DO i = 1, 2
|
||||
|
||||
IF(i.NE.1)THEN
|
||||
CALL H5Pset_virtual_view_f(dapl, H5D_VDS_LAST_AVAILABLE_F, error)
|
||||
CALL check("H5Pset_virtual_view_f", error, total_error)
|
||||
ELSE
|
||||
CALL H5Pset_virtual_view_f(dapl, H5D_VDS_FIRST_MISSING_F, error)
|
||||
CALL check("H5Pset_virtual_view_f", error, total_error)
|
||||
ENDIF
|
||||
|
||||
CALL H5Dopen_f(vfile, DATASET, vdset, error, dapl)
|
||||
CALL check("H5Dopen_f", error, total_error)
|
||||
|
||||
! Let's get space of the VDS and its dimension we should get 32(or 20)x10x10
|
||||
CALL H5Dget_space_f(vdset, vspace, error)
|
||||
CALL check("H5Dget_space_f", error, total_error)
|
||||
CALL H5Sget_simple_extent_dims_f(vspace, vdsdims_out, vdsdims_max_out, error)
|
||||
CALL check("H5Sget_simple_extent_dims_f", error, total_error)
|
||||
|
||||
! check VDS dimensions
|
||||
DO j = 1, RANK
|
||||
IF(vdsdims_out(j).NE.vdsdims_out_correct(i,j))THEN
|
||||
total_error = total_error + 1
|
||||
EXIT
|
||||
ENDIF
|
||||
ENDDO
|
||||
|
||||
CALL H5Pget_virtual_view_f(dapl, virtual_view, error)
|
||||
CALL check("h5pget_virtual_view_f", error, total_error)
|
||||
|
||||
IF(i.EQ.1)THEN
|
||||
IF(virtual_view .NE. H5D_VDS_FIRST_MISSING_F)THEN
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
ELSE
|
||||
IF(virtual_view .NE. H5D_VDS_LAST_AVAILABLE_F)THEN
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
|
||||
ENDIF
|
||||
|
||||
! Close
|
||||
CALL H5Dclose_f(vdset, error)
|
||||
CALL check("H5Dclose_f", error, total_error)
|
||||
CALL H5Sclose_f(vspace, error)
|
||||
CALL check("H5Sclose_f", error, total_error)
|
||||
ENDDO
|
||||
|
||||
CALL H5Dopen_f(vfile, DATASET, vdset, error)
|
||||
CALL check("H5Dopen_f", error, total_error)
|
||||
|
||||
!
|
||||
! Get creation property list and mapping properties.
|
||||
!
|
||||
CALL H5Dget_create_plist_f (vdset, dcpl, error)
|
||||
CALL check("H5Dget_create_plist_f", error, total_error)
|
||||
|
||||
!
|
||||
! Get storage layout.
|
||||
CALL H5Pget_layout_f(dcpl, layout, error)
|
||||
CALL check("H5Pget_layout_f", error, total_error)
|
||||
|
||||
IF (H5D_VIRTUAL_F .NE. layout) THEN
|
||||
PRINT*,"Wrong layout found"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
|
||||
!
|
||||
! Find number of mappings.
|
||||
|
||||
CALL H5Pget_virtual_count_f(dcpl, num_map, error)
|
||||
CALL check("H5Pget_virtual_count_f", error, total_error)
|
||||
|
||||
IF(num_map.NE.4_size_t)THEN
|
||||
PRINT*,"Number of mappings is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
!
|
||||
! Get mapping parameters for each mapping.
|
||||
!
|
||||
DO i = 1, num_map
|
||||
CALL H5Pget_virtual_vspace_f(dcpl, INT(i-1,size_t), vspace, error)
|
||||
CALL check("H5Pget_virtual_vspace_f", error, total_error)
|
||||
|
||||
CALL h5sget_select_type_f(vspace, s_type, error)
|
||||
CALL check("h5sget_select_type_f", error, total_error)
|
||||
IF(s_type.EQ.H5S_SEL_HYPERSLABS_F)THEN
|
||||
CALL H5Sis_regular_hyperslab_f(vspace, IsRegular, error)
|
||||
CALL check("H5Sis_regular_hyperslab_f", error, total_error)
|
||||
|
||||
IF(IsRegular)THEN
|
||||
CALL H5Sget_regular_hyperslab_f(vspace, start_out, stride_out, count_out, block_out, error)
|
||||
CALL check("H5Sget_regular_hyperslab_f", error, total_error)
|
||||
DO j = 1, 3
|
||||
IF(start_out(j).NE.start_correct(j,i) .OR. &
|
||||
stride_out(j).NE.stride(j).OR. &
|
||||
count_out(j).NE.src_count(j))THEN
|
||||
total_error = total_error + 1
|
||||
EXIT
|
||||
ENDIF
|
||||
ENDDO
|
||||
ENDIF
|
||||
END IF
|
||||
|
||||
! Get source file name
|
||||
CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_EXACT, error, nsize)
|
||||
CALL check("H5Pget_virtual_count_f", error, total_error)
|
||||
|
||||
IF(nsize.NE.LEN(SRC_FILE_LEN_EXACT))THEN
|
||||
PRINT*,"virtual filenname size is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
! check passing a buffer that is very small
|
||||
CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_TINY, error)
|
||||
CALL check("H5Pget_virtual_filename_f", error, total_error)
|
||||
IF(SRC_FILE_LEN_TINY.NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_TINY)))THEN
|
||||
PRINT*,"virtual filenname returned is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
! check passing a buffer that small by one
|
||||
CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_SMALL, error)
|
||||
CALL check("H5Pget_virtual_filename_f", error, total_error)
|
||||
IF(SRC_FILE_LEN_SMALL.NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_SMALL)))THEN
|
||||
PRINT*,"virtual filenname returned is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
! check passing a buffer that is exact
|
||||
CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_EXACT, error)
|
||||
CALL check("H5Pget_virtual_filename_f", error, total_error)
|
||||
IF(SRC_FILE_LEN_EXACT.NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_EXACT)))THEN
|
||||
PRINT*,"virtual filenname returned is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
! check passing a buffer that bigger by one
|
||||
CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_LARGE, error)
|
||||
CALL check("H5Pget_virtual_filename_f", error, total_error)
|
||||
IF(SRC_FILE_LEN_LARGE(1:LEN(SRC_FILE_LEN_EXACT)).NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_EXACT)).AND. &
|
||||
SRC_FILE_LEN_LARGE(LEN(SRC_FILE_LEN_EXACT):).NE.'')THEN
|
||||
PRINT*,"virtual filenname returned is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
! check passing a buffer that is very big
|
||||
CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_HUGE, error)
|
||||
CALL check("H5Pget_virtual_filename_f", error, total_error)
|
||||
IF(SRC_FILE_LEN_HUGE(1:LEN(SRC_FILE_LEN_EXACT)).NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_EXACT)).AND. &
|
||||
SRC_FILE_LEN_HUGE(LEN(SRC_FILE_LEN_EXACT):).NE.'')THEN
|
||||
PRINT*,"virtual filenname returned is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
! Get source dataset name
|
||||
CALL H5Pget_virtual_dsetname_f(dcpl, INT(i-1, size_t), SRC_DATASET_LEN_EXACT, error, nsize)
|
||||
CALL check("H5Pget_virtual_dsetname_f", error, total_error)
|
||||
|
||||
CALL H5Pget_virtual_dsetname_f(dcpl, INT(i-1, size_t), SRC_DATASET_LEN_EXACT, error)
|
||||
CALL check("H5Pget_virtual_dsetname_f", error, total_error)
|
||||
IF(SRC_DATASET_LEN_EXACT(1:LEN(SRC_DATASET_LEN_EXACT)).NE.SRC_DATASET(i)(1:LEN(SRC_DATASET_LEN_EXACT)).AND. &
|
||||
SRC_DATASET_LEN_EXACT(LEN(SRC_DATASET_LEN_EXACT):).NE.'')THEN
|
||||
PRINT*,"virtual dataset returned is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
|
||||
CALL h5pget_virtual_srcspace_f(dcpl, INT(i-1,size_t), space_out, error)
|
||||
CALL check("H5Pget_virtual_srcspace_f", error, total_error)
|
||||
|
||||
CALL h5sget_select_type_f(space_out, type1, error)
|
||||
CALL check("H5Sget_select_type_f", error, total_error)
|
||||
CALL h5sget_select_type_f(vspace, type2, error)
|
||||
CALL check("H5Sget_select_type_f", error, total_error)
|
||||
|
||||
IF(type1.NE.type2)THEN
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
|
||||
ENDDO
|
||||
!
|
||||
! Close and release resources.
|
||||
|
||||
! Clear virtual layout in DCPL
|
||||
CALL h5pset_layout_f(dcpl, H5D_VIRTUAL_F,error)
|
||||
CALL check("H5Pset_layout_f", error, total_error)
|
||||
|
||||
CALL H5Pclose_f(dcpl, error)
|
||||
CALL check("H5Pclose_f", error, total_error)
|
||||
CALL H5Dclose_f(vdset, error)
|
||||
CALL check("H5Dclose_f", error, total_error)
|
||||
|
||||
! Reopen VDS with printf gap set to 1
|
||||
|
||||
CALL H5Pset_virtual_printf_gap_f(dapl, 1_hsize_t, error)
|
||||
CALL check("H5Pset_virtual_printf_gap_f", error, total_error)
|
||||
|
||||
CALL H5Dopen_f(vfile, DATASET, vdset, error, dapl)
|
||||
CALL check("H5Dopen_f", error, total_error)
|
||||
|
||||
CALL H5Pget_virtual_printf_gap_f(dapl, gap_size, error)
|
||||
CALL check("H5Pget_virtual_printf_gap_f", error, total_error)
|
||||
|
||||
IF(gap_size.NE.1_hsize_t)THEN
|
||||
PRINT*,"gapsize is incorrect"
|
||||
total_error = total_error + 1
|
||||
ENDIF
|
||||
|
||||
CALL H5Dclose_f(vdset, error)
|
||||
CALL check("H5Dclose_f", error, total_error)
|
||||
CALL H5Sclose_f(vspace, error)
|
||||
CALL check("H5Sclose_f", error, total_error)
|
||||
CALL H5Pclose_f(dapl, error)
|
||||
CALL check("H5Pclose_f", error, total_error)
|
||||
CALL H5Fclose_f(vfile, error)
|
||||
CALL check("H5Fclose_f", error, total_error)
|
||||
|
||||
END SUBROUTINE test_vds
|
||||
|
||||
|
||||
END MODULE TH5P_F03
|
||||
|
||||
Loading…
Reference in New Issue
Block a user