diff --git a/MANIFEST b/MANIFEST index 328d15bc32..492faca1b8 100644 --- a/MANIFEST +++ b/MANIFEST @@ -1265,6 +1265,10 @@ # high level libraries ./hl/Makefile.am ./hl/Makefile.in +./hl/examples/Makefile.am +./hl/examples/Makefile.in +./hl/examples/ptExampleFL.c +./hl/examples/ptExampleVL.c ./hl/src/Makefile.am ./hl/src/Makefile.in ./hl/src/H5IM.c @@ -1306,6 +1310,10 @@ ./hl/test/earth.pal # hl fortran +./hl/fortran/Makefile.am +./hl/fortran/Makefile.in +./hl/fortran/examples/Makefile.am +./hl/fortran/examples/Makefile.in ./hl/fortran/src/H5IMcc.c ./hl/fortran/src/H5IMcc.h ./hl/fortran/src/H5IMfc.c @@ -1322,10 +1330,14 @@ ./hl/fortran/test/tstimage.f90 ./hl/fortran/test/tstlite.f90 ./hl/fortran/test/tsttable.f90 -./hl/fortran/Makefile.am -./hl/fortran/Makefile.in # hl c++ +./hl/c++/Makefile.am +./hl/c++/Makefile.in +./hl/c++/examples/Makefile.am +./hl/c++/examples/Makefile.in +./hl/c++/examples/ptExampleFL.cpp +./hl/c++/examples/ptExampleVL.cpp ./hl/c++/src/H5PacketTable.h ./hl/c++/src/H5PacketTable.cpp ./hl/c++/src/Makefile.am @@ -1334,8 +1346,6 @@ ./hl/c++/test/ptableTest.cpp ./hl/c++/test/Makefile.am ./hl/c++/test/Makefile.in -./hl/c++/Makefile.am -./hl/c++/Makefile.in #windows projects diff --git a/c++/examples/Makefile.am b/c++/examples/Makefile.am index e82c3cded4..f60b6d7043 100644 --- a/c++/examples/Makefile.am +++ b/c++/examples/Makefile.am @@ -24,11 +24,6 @@ include $(top_srcdir)/config/commence.am # which 'make check' will run. List them in the order they should be run. TEST_PROG=create readdata writedata compound extend_ds chunks h5group -EXAMPLE_PROG=$(TEST_PROG) - -# Tell conclude.in when to build the examples -EXTRA_PROG=$(TEST_PROG) - # These are the example files to be installed INSTALL_FILES=create.cpp readdata.cpp writedata.cpp compound.cpp \ extend_ds.cpp chunks.cpp h5group.cpp @@ -37,53 +32,12 @@ INSTALL_FILES=create.cpp readdata.cpp writedata.cpp compound.cpp \ readdata.chkexe_: create.chkexe_ chunks.chkexe_: extend_ds.chkexe_ -# These are the files that 'make clean' (and derivatives) will remove from this -# directory. Since automake doesn't know about the examples, we need to -# tell it to clean the example programs, too. -CHECK_CLEANFILES+=*.h5 -MOSTLYCLEANFILES=$(EXTRA_PROG:=.o) -CLEANFILES=$(EXTRA_PROG) - # Tell conclude.am that these are C++ tests. HDF_CXX=yes -# How to install examples +# Where to install examples EXAMPLEDIR=$(docdir)/hdf5/examples/c++ -$(EXAMPLEDIR): - -$(top_srcdir)/bin/mkdirs $@ - -install-data-local: - @$(MAKE) install-examples -uninstall-local: - @$(MAKE) uninstall-examples - -# Some C++ compilers/linkers will create a directory named ii_files, -# which should be cleaned. -mostlyclean-local: - if test -d ii_files; then \ - $(RM) -rf ii_files; \ - fi - -# Install source files, which are the examples with .cpp suffixes. Do the same -# for uninstall. -install-examples: $(EXAMPLEDIR) - @for f in X $(INSTALL_FILES); do \ - if test $$f != X; then \ - (set -x; $(INSTALL_DATA) $(top_srcdir)/c++/examples/$$f $(EXAMPLEDIR)/. || exit 1);\ - fi; \ - done - -uninstall-examples: - @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ - set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES).cpp; \ - fi - -check-install: - @$(MAKE) $(AM_MAKEFLAGS) installcheck -installcheck-local: - @$(MAKE) $(AM_MAKEFLAGS) check - # How to build programs using h5c++ $(EXTRA_PROG): $(LIBHDF5) $(LIBH5CPP) $(H5CPP) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp @@ -100,4 +54,5 @@ extend_ds: $(srcdir)/extend_ds.cpp chunks: $(srcdir)/chunks.cpp h5group: $(srcdir)/h5group.cpp +include $(top_srcdir)/config/examples.am include $(top_srcdir)/config/conclude.am diff --git a/c++/examples/Makefile.in b/c++/examples/Makefile.in index 6e54d863e7..742b0d9ff3 100644 --- a/c++/examples/Makefile.in +++ b/c++/examples/Makefile.in @@ -29,6 +29,10 @@ # # HDF5 Library Examples Makefile(.in) # + +# We can't tell automake about example programs, because they need to be +# built using h5cc (or h5fc, etc.) instead of the standard compilers. +# This creates some extra work for us. srcdir = @srcdir@ top_srcdir = @top_srcdir@ VPATH = @srcdir@ @@ -53,7 +57,8 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(top_srcdir)/config/commence.am \ - $(top_srcdir)/config/conclude.am + $(top_srcdir)/config/conclude.am \ + $(top_srcdir)/config/examples.am subdir = c++/examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/configure.in @@ -301,33 +306,32 @@ TRACE = perl $(top_srcdir)/bin/trace # .chkexe files are used to mark tests that have run successfully. # .chklog files are output from those tests. # *.clog are from the MPE option. - -# These are the files that 'make clean' (and derivatives) will remove from this -# directory. Since automake doesn't know about the examples, we need to -# tell it to clean the example programs, too. CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 # These are the programs that 'make all' or 'make prog' will build and # which 'make check' will run. List them in the order they should be run. TEST_PROG = create readdata writedata compound extend_ds chunks h5group -EXAMPLE_PROG = $(TEST_PROG) - -# Tell conclude.in when to build the examples -EXTRA_PROG = $(TEST_PROG) # These are the example files to be installed INSTALL_FILES = create.cpp readdata.cpp writedata.cpp compound.cpp \ extend_ds.cpp chunks.cpp h5group.cpp -MOSTLYCLEANFILES = $(EXTRA_PROG:=.o) -CLEANFILES = $(EXTRA_PROG) # Tell conclude.am that these are C++ tests. HDF_CXX = yes -# How to install examples +# Where to install examples EXAMPLEDIR = $(docdir)/hdf5/examples/c++ +# Assume that all tests in this directory are examples, and tell +# conclude.am when to build them. +EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) + +# We need to tell automake what to clean +MOSTLYCLEANFILES = *.raw *.meta *.o +CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) + # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and @@ -347,7 +351,7 @@ TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_) all: all-am .SUFFIXES: -$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__configure_deps) +$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am $(am__configure_deps) @for dep in $?; do \ case '$(am__configure_deps)' in \ *$$dep*) \ @@ -530,40 +534,6 @@ check-install: installcheck readdata.chkexe_: create.chkexe_ chunks.chkexe_: extend_ds.chkexe_ -$(EXAMPLEDIR): - -$(top_srcdir)/bin/mkdirs $@ - -install-data-local: - @$(MAKE) install-examples -uninstall-local: - @$(MAKE) uninstall-examples - -# Some C++ compilers/linkers will create a directory named ii_files, -# which should be cleaned. -mostlyclean-local: - if test -d ii_files; then \ - $(RM) -rf ii_files; \ - fi - -# Install source files, which are the examples with .cpp suffixes. Do the same -# for uninstall. -install-examples: $(EXAMPLEDIR) - @for f in X $(INSTALL_FILES); do \ - if test $$f != X; then \ - (set -x; $(INSTALL_DATA) $(top_srcdir)/c++/examples/$$f $(EXAMPLEDIR)/. || exit 1);\ - fi; \ - done - -uninstall-examples: - @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ - set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES).cpp; \ - fi - -check-install: - @$(MAKE) $(AM_MAKEFLAGS) installcheck -installcheck-local: - @$(MAKE) $(AM_MAKEFLAGS) check - # How to build programs using h5c++ $(EXTRA_PROG): $(LIBHDF5) $(LIBH5CPP) $(H5CPP) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp @@ -580,6 +550,32 @@ extend_ds: $(srcdir)/extend_ds.cpp chunks: $(srcdir)/chunks.cpp h5group: $(srcdir)/h5group.cpp +# How to create EXAMPLEDIR if it doesn't already exist +$(EXAMPLEDIR): + -$(top_srcdir)/bin/mkdirs $@ + +# Install and uninstall rules. We install the source files, not the +# example programs themselves. +install-data-local: + @$(MAKE) $(AM_MAKEFLAGS) install-examples +uninstall-local: + @$(MAKE) $(AM_MAKEFLAGS) uninstall-examples + +install-examples: $(EXAMPLEDIR) $(INSTALL_FILES) + @for f in X $(INSTALL_FILES); do \ + if test $$f != X; then \ + (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);\ + fi; \ + done + +uninstall-examples: + @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ + set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \ + fi + +installcheck-local: + @$(MAKE) $(AM_MAKEFLAGS) check + # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) diff --git a/configure b/configure index 02bb200ff7..b600d47819 100755 --- a/configure +++ b/configure @@ -51189,7 +51189,7 @@ if test -n "$TESTPARALLEL"; then fi fi - ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/gifconv/Makefile examples/Makefile c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/examples/Makefile fortran/Makefile fortran/src/h5fc fortran/src/libhdf5_fortran.settings fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile hl/Makefile hl/src/Makefile hl/test/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile" + ac_config_files="$ac_config_files src/libhdf5.settings Makefile src/Makefile test/Makefile testpar/Makefile testpar/testph5.sh perform/Makefile tools/Makefile tools/h5dump/Makefile tools/h5dump/testh5dump.sh tools/h5import/Makefile tools/h5diff/Makefile tools/h5jam/Makefile tools/h5jam/testh5jam.sh tools/h5repack/Makefile tools/h5repack/h5repack.sh tools/h5ls/Makefile tools/lib/Makefile tools/misc/Makefile tools/misc/h5cc tools/misc/testh5repart.sh tools/gifconv/Makefile examples/Makefile c++/Makefile c++/src/Makefile c++/src/h5c++ c++/test/Makefile c++/examples/Makefile fortran/Makefile fortran/src/h5fc fortran/src/libhdf5_fortran.settings fortran/src/Makefile fortran/test/Makefile fortran/testpar/Makefile fortran/examples/Makefile hl/Makefile hl/src/Makefile hl/test/Makefile hl/examples/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile hl/c++/examples/Makefile hl/fortran/Makefile hl/fortran/src/Makefile hl/fortran/test/Makefile hl/fortran/examples/Makefile" cat >confcache <<\_ACEOF @@ -51857,12 +51857,15 @@ do "hl/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/Makefile" ;; "hl/src/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/src/Makefile" ;; "hl/test/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/test/Makefile" ;; + "hl/examples/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/examples/Makefile" ;; "hl/c++/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/c++/Makefile" ;; "hl/c++/src/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/c++/src/Makefile" ;; "hl/c++/test/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/c++/test/Makefile" ;; + "hl/c++/examples/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/c++/examples/Makefile" ;; "hl/fortran/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/fortran/Makefile" ;; "hl/fortran/src/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/fortran/src/Makefile" ;; "hl/fortran/test/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/fortran/test/Makefile" ;; + "hl/fortran/examples/Makefile" ) CONFIG_FILES="$CONFIG_FILES hl/fortran/examples/Makefile" ;; "default-1" ) CONFIG_COMMANDS="$CONFIG_COMMANDS default-1" ;; "depfiles" ) CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;; "src/H5config.h" ) CONFIG_HEADERS="$CONFIG_HEADERS src/H5config.h" ;; diff --git a/configure.in b/configure.in index 9fdcdd20dc..5619f1cd7c 100644 --- a/configure.in +++ b/configure.in @@ -3282,12 +3282,15 @@ AC_CONFIG_FILES([src/libhdf5.settings hl/Makefile hl/src/Makefile hl/test/Makefile + hl/examples/Makefile hl/c++/Makefile hl/c++/src/Makefile hl/c++/test/Makefile + hl/c++/examples/Makefile hl/fortran/Makefile hl/fortran/src/Makefile - hl/fortran/test/Makefile]) + hl/fortran/test/Makefile + hl/fortran/examples/Makefile]) AC_OUTPUT no_create=$saved_no_create diff --git a/examples/Makefile.am b/examples/Makefile.am index 6143c6eefa..e6991d9bcb 100644 --- a/examples/Makefile.am +++ b/examples/Makefile.am @@ -27,28 +27,16 @@ endif # Example programs. # Don't tell automake about them, because if it knew they were programs, # it would try to compile them instead of using the h5cc script. -# This creates some extra work for us. -# -# It might be possible to use automake's COMPILE variable to have it -# use h5cc properly (and h5fc and h5c++). +# Use the boilerplate in config/examples.am instead. TEST_PROG = h5_write h5_read h5_extend_write h5_chunk_read h5_compound \ h5_group h5_select h5_attribute h5_mount h5_reference h5_drivers -# Tell conclude.in boilerplate when to build the examples -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) - # Install files # List all file that should be installed in examples directory INSTALL_FILES = h5_write.c h5_read.c h5_extend_write.c h5_chunk_read.c \ h5_compound.c h5_group.c h5_select.c h5_attribute.c h5_mount.c \ h5_reference.c h5_drivers.c ph5example.c -# We need to tell automake what to clean -MOSTLYCLEANFILES=*.raw *.meta *.o -CHECK_CLEANFILES+=*.h5 -CLEANFILES=$(TEST_PROG) $(TEST_PROG_PARA) - # Additional dependencies for each program are listed below. $(EXTRA_PROG): $(LIBHDF5) if BUILD_PARALLEL_CONDITIONAL @@ -61,39 +49,9 @@ endif h5_read.chkexe_: h5_write.chkexe_ h5_chunk_read.chkexe_: h5_extend_write.chkexe_ -# How to install examples -# There are a lot of rules because automake does not know about -# the examples programs, and does not recognize the install-examples -# target. +# Example directory EXAMPLEDIR=$(docdir)/hdf5/examples/c -$(EXAMPLEDIR): - -$(top_srcdir)/bin/mkdirs $@ - -install-data-local: - @$(MAKE) $(AM_MAKEFLAGS) install-examples -uninstall-local: - @$(MAKE) $(AM_MAKEFLAGS) uninstall-examples - -# We want to install the source files, not the examples themselves. Add '.c' to -# each example to get its source. This is a bit kludgy. -install-examples: $(EXAMPLEDIR) $(INSTALL_FILES) - @for f in X $(INSTALL_FILES); do \ - if test $$f != X; then \ - (set -x; $(INSTALL) $(top_srcdir)/examples/$$f $(EXAMPLEDIR)/. || exit 1);\ - fi; \ - done - -uninstall-examples: - @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ - set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \ - fi - -check-install: - @$(MAKE) $(AM_MAKEFLAGS) installcheck -installcheck-local: - @$(MAKE) $(AM_MAKEFLAGS) check - # List dependencies for each program. Normally, automake would take # care of this for us, but if we tell automake about the programs it # will try to build them with the normal C compiler, not h5cc. This is @@ -114,4 +72,5 @@ h5_drivers: $(srcdir)/h5_drivers.c ph5example: $(srcdir)/ph5example.c h5_dtransform: $(srcdir)/h5_dtransform.c +include $(top_srcdir)/config/examples.am include $(top_srcdir)/config/conclude.am diff --git a/examples/Makefile.in b/examples/Makefile.in index 084ac5cea1..91b3bec220 100644 --- a/examples/Makefile.in +++ b/examples/Makefile.in @@ -29,6 +29,10 @@ # # HDF5 Library Examples Makefile(.in) # + +# We can't tell automake about example programs, because they need to be +# built using h5cc (or h5fc, etc.) instead of the standard compilers. +# This creates some extra work for us. srcdir = @srcdir@ top_srcdir = @top_srcdir@ VPATH = @srcdir@ @@ -53,7 +57,8 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(top_srcdir)/config/commence.am \ - $(top_srcdir)/config/conclude.am + $(top_srcdir)/config/conclude.am \ + $(top_srcdir)/config/examples.am subdir = examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/configure.in @@ -307,18 +312,11 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 # Example programs. # Don't tell automake about them, because if it knew they were programs, # it would try to compile them instead of using the h5cc script. -# This creates some extra work for us. -# -# It might be possible to use automake's COMPILE variable to have it -# use h5cc properly (and h5fc and h5c++). +# Use the boilerplate in config/examples.am instead. TEST_PROG = h5_write h5_read h5_extend_write h5_chunk_read h5_compound \ h5_group h5_select h5_attribute h5_mount h5_reference h5_drivers -# Tell conclude.in boilerplate when to build the examples -EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) -EXTRA_PROG = $(EXAMPLE_PROG) - # Install files # List all file that should be installed in examples directory INSTALL_FILES = h5_write.c h5_read.c h5_extend_write.c h5_chunk_read.c \ @@ -326,16 +324,18 @@ INSTALL_FILES = h5_write.c h5_read.c h5_extend_write.c h5_chunk_read.c \ h5_reference.c h5_drivers.c ph5example.c +# Example directory +EXAMPLEDIR = $(docdir)/hdf5/examples/c + +# Assume that all tests in this directory are examples, and tell +# conclude.am when to build them. +EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) + # We need to tell automake what to clean MOSTLYCLEANFILES = *.raw *.meta *.o CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) -# How to install examples -# There are a lot of rules because automake does not know about -# the examples programs, and does not recognize the install-examples -# target. -EXAMPLEDIR = $(docdir)/hdf5/examples/c - # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and @@ -355,7 +355,7 @@ TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_) all: all-am .SUFFIXES: -$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__configure_deps) +$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am $(am__configure_deps) @for dep in $?; do \ case '$(am__configure_deps)' in \ *$$dep*) \ @@ -543,33 +543,6 @@ $(EXTRA_PROG): $(LIBHDF5) h5_read.chkexe_: h5_write.chkexe_ h5_chunk_read.chkexe_: h5_extend_write.chkexe_ -$(EXAMPLEDIR): - -$(top_srcdir)/bin/mkdirs $@ - -install-data-local: - @$(MAKE) $(AM_MAKEFLAGS) install-examples -uninstall-local: - @$(MAKE) $(AM_MAKEFLAGS) uninstall-examples - -# We want to install the source files, not the examples themselves. Add '.c' to -# each example to get its source. This is a bit kludgy. -install-examples: $(EXAMPLEDIR) $(INSTALL_FILES) - @for f in X $(INSTALL_FILES); do \ - if test $$f != X; then \ - (set -x; $(INSTALL) $(top_srcdir)/examples/$$f $(EXAMPLEDIR)/. || exit 1);\ - fi; \ - done - -uninstall-examples: - @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ - set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \ - fi - -check-install: - @$(MAKE) $(AM_MAKEFLAGS) installcheck -installcheck-local: - @$(MAKE) $(AM_MAKEFLAGS) check - # List dependencies for each program. Normally, automake would take # care of this for us, but if we tell automake about the programs it # will try to build them with the normal C compiler, not h5cc. This is @@ -590,6 +563,32 @@ h5_drivers: $(srcdir)/h5_drivers.c ph5example: $(srcdir)/ph5example.c h5_dtransform: $(srcdir)/h5_dtransform.c +# How to create EXAMPLEDIR if it doesn't already exist +$(EXAMPLEDIR): + -$(top_srcdir)/bin/mkdirs $@ + +# Install and uninstall rules. We install the source files, not the +# example programs themselves. +install-data-local: + @$(MAKE) $(AM_MAKEFLAGS) install-examples +uninstall-local: + @$(MAKE) $(AM_MAKEFLAGS) uninstall-examples + +install-examples: $(EXAMPLEDIR) $(INSTALL_FILES) + @for f in X $(INSTALL_FILES); do \ + if test $$f != X; then \ + (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);\ + fi; \ + done + +uninstall-examples: + @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ + set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \ + fi + +installcheck-local: + @$(MAKE) $(AM_MAKEFLAGS) check + # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) diff --git a/fortran/examples/Makefile.am b/fortran/examples/Makefile.am index 389d15d0a6..1d258c78cb 100644 --- a/fortran/examples/Makefile.am +++ b/fortran/examples/Makefile.am @@ -34,20 +34,12 @@ TEST_PROG=dsetexample fileexample rwdsetexample attrexample groupexample \ grpsexample grpdsetexample hyperslab selectele grpit refobjexample \ refregexample mountexample compound -# Tell configure.in when to build examples -EXTRA_PROG=$(TEST_PROG) $(TEST_PROG_PARA) -EXAMPLE_PROG=$(EXTRA_PROG) - # List files to be installed here INSTALL_FILES=dsetexample.f90 fileexample.f90 rwdsetexample.f90 \ attrexample.f90 groupexample.f90 grpsexample.f90 grpdsetexample.f90 \ hyperslab.f90 selectele.f90 grpit.f90 refobjexample.f90 \ refregexample.f90 mountexample.f90 compound.f90 ph5example.f90 -# Tell automake which files to clean -MOSTLYCLEANFILES=$(EXTRA_PROG:=.o) -CLEANFILES=*.h5 $(EXTRA_PROG) - # Mark this directory as part of the Fortran API HDF_FORTRAN=yes @@ -71,33 +63,6 @@ endif # Tell automake how to install examples EXAMPLEDIR=$(docdir)/hdf5/examples/fortran -$(EXAMPLEDIR): - -$(top_srcdir)/bin/mkdirs $@ - -install-data-local: - @$(MAKE) install-examples -uninstall-local: - @$(MAKE) uninstall-examples - -# We're installing source files, not the example programs. Add .f90 to each -# example program to get its source (and do the same when uninstalling). -install-examples: $(EXAMPLEDIR) - @for f in X $(INSTALL_FILES); do \ - if test $$f != X; then \ - (set -x; $(INSTALL_DATA) $(top_srcdir)/fortran/examples/$$f $(EXAMPLEDIR)/. || exit 1);\ - fi; \ - done - -uninstall-examples: - @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ - set -x; cd $(EXAMPLEDIR) && $(RM) $(EXAMPLE_PROG); \ - fi - -check-install: - @$(MAKE) installcheck -installcheck-local: - @$(MAKE) check - # List dependencies for each example. Normally, automake would take # care of this for us, but if we tell automake about the programs it # will try to build them with the normal C compiler, not h5cc. This is @@ -120,4 +85,5 @@ mountexample: mountexample.f90 compound: compound.f90 ph5example: ph5example.f90 +include $(top_srcdir)/config/examples.am include $(top_srcdir)/config/conclude.am diff --git a/fortran/examples/Makefile.in b/fortran/examples/Makefile.in index cb78035354..3ae97baab3 100644 --- a/fortran/examples/Makefile.in +++ b/fortran/examples/Makefile.in @@ -29,6 +29,10 @@ # # HDF5-Fortran Examples Makefile(.in) # + +# We can't tell automake about example programs, because they need to be +# built using h5cc (or h5fc, etc.) instead of the standard compilers. +# This creates some extra work for us. srcdir = @srcdir@ top_srcdir = @top_srcdir@ VPATH = @srcdir@ @@ -53,7 +57,8 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(top_srcdir)/config/commence.am \ - $(top_srcdir)/config/conclude.am + $(top_srcdir)/config/conclude.am \ + $(top_srcdir)/config/examples.am subdir = fortran/examples ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/configure.in @@ -301,7 +306,7 @@ TRACE = perl $(top_srcdir)/bin/trace # .chkexe files are used to mark tests that have run successfully. # .chklog files are output from those tests. # *.clog are from the MPE option. -CHECK_CLEANFILES = *.chkexe *.chklog *.clog +CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 # Compile parallel fortran examples only if parallel is enabled @BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = ph5example @@ -316,10 +321,6 @@ TEST_PROG = dsetexample fileexample rwdsetexample attrexample groupexample \ refregexample mountexample compound -# Tell configure.in when to build examples -EXTRA_PROG = $(TEST_PROG) $(TEST_PROG_PARA) -EXAMPLE_PROG = $(EXTRA_PROG) - # List files to be installed here INSTALL_FILES = dsetexample.f90 fileexample.f90 rwdsetexample.f90 \ attrexample.f90 groupexample.f90 grpsexample.f90 grpdsetexample.f90 \ @@ -327,16 +328,21 @@ INSTALL_FILES = dsetexample.f90 fileexample.f90 rwdsetexample.f90 \ refregexample.f90 mountexample.f90 compound.f90 ph5example.f90 -# Tell automake which files to clean -MOSTLYCLEANFILES = $(EXTRA_PROG:=.o) -CLEANFILES = *.h5 $(EXTRA_PROG) - # Mark this directory as part of the Fortran API HDF_FORTRAN = yes # Tell automake how to install examples EXAMPLEDIR = $(docdir)/hdf5/examples/fortran +# Assume that all tests in this directory are examples, and tell +# conclude.am when to build them. +EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) + +# We need to tell automake what to clean +MOSTLYCLEANFILES = *.raw *.meta *.o +CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) + # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., # lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and @@ -356,7 +362,7 @@ TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_) all: all-am .SUFFIXES: -$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__configure_deps) +$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am $(am__configure_deps) @for dep in $?; do \ case '$(am__configure_deps)' in \ *$$dep*) \ @@ -549,33 +555,6 @@ $(EXTRA_PROG): $(LIBHDF5) $(LIBH5F) @BUILD_PARALLEL_CONDITIONAL_TRUE@ $(H5FC_PP) $(FCFLAGS) -o $@ $(srcdir)/$@.f90; @BUILD_PARALLEL_CONDITIONAL_FALSE@ $(H5FC) $(FCFLAGS) -o $@ $(srcdir)/$@.f90; -$(EXAMPLEDIR): - -$(top_srcdir)/bin/mkdirs $@ - -install-data-local: - @$(MAKE) install-examples -uninstall-local: - @$(MAKE) uninstall-examples - -# We're installing source files, not the example programs. Add .f90 to each -# example program to get its source (and do the same when uninstalling). -install-examples: $(EXAMPLEDIR) - @for f in X $(INSTALL_FILES); do \ - if test $$f != X; then \ - (set -x; $(INSTALL_DATA) $(top_srcdir)/fortran/examples/$$f $(EXAMPLEDIR)/. || exit 1);\ - fi; \ - done - -uninstall-examples: - @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ - set -x; cd $(EXAMPLEDIR) && $(RM) $(EXAMPLE_PROG); \ - fi - -check-install: - @$(MAKE) installcheck -installcheck-local: - @$(MAKE) check - # List dependencies for each example. Normally, automake would take # care of this for us, but if we tell automake about the programs it # will try to build them with the normal C compiler, not h5cc. This is @@ -598,6 +577,32 @@ mountexample: mountexample.f90 compound: compound.f90 ph5example: ph5example.f90 +# How to create EXAMPLEDIR if it doesn't already exist +$(EXAMPLEDIR): + -$(top_srcdir)/bin/mkdirs $@ + +# Install and uninstall rules. We install the source files, not the +# example programs themselves. +install-data-local: + @$(MAKE) $(AM_MAKEFLAGS) install-examples +uninstall-local: + @$(MAKE) $(AM_MAKEFLAGS) uninstall-examples + +install-examples: $(EXAMPLEDIR) $(INSTALL_FILES) + @for f in X $(INSTALL_FILES); do \ + if test $$f != X; then \ + (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);\ + fi; \ + done + +uninstall-examples: + @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ + set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \ + fi + +installcheck-local: + @$(MAKE) $(AM_MAKEFLAGS) check + # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) diff --git a/hl/Makefile.am b/hl/Makefile.am index 8064ba12e0..c4b678706d 100644 --- a/hl/Makefile.am +++ b/hl/Makefile.am @@ -38,5 +38,17 @@ endif if BUILD_HDF5_HL_CONDITIONAL SUBDIRS=src test $(CXX_DIR) $(FORTRAN_DIR) endif +DIST_SUBDIRS=src test c++ fortran examples + +# Install examples +install-examples uninstall-examples: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + +# Check that examples can be successfully built +check-install: + @$(MAKE) $(AM_MAKEFLAGS) installcheck + +installcheck-local: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; include $(top_srcdir)/config/conclude.am diff --git a/hl/Makefile.in b/hl/Makefile.in index 005019d69a..09c87ace8e 100755 --- a/hl/Makefile.in +++ b/hl/Makefile.in @@ -76,7 +76,6 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ uninstall-recursive ETAGS = etags CTAGS = ctags -DIST_SUBDIRS = src test c++ fortran DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) # Set the paths for AFS installs of autotools for Linux machines @@ -318,6 +317,7 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog @BUILD_FORTRAN_CONDITIONAL_TRUE@FORTRAN_DIR = fortran @BUILD_CXX_CONDITIONAL_TRUE@CXX_DIR = c++ @BUILD_HDF5_HL_CONDITIONAL_TRUE@SUBDIRS = src test $(CXX_DIR) $(FORTRAN_DIR) +DIST_SUBDIRS = src test c++ fortran examples # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -610,7 +610,7 @@ install-info: install-info-recursive install-man: -installcheck-am: +installcheck-am: installcheck-local maintainer-clean: maintainer-clean-recursive -rm -f Makefile @@ -640,12 +640,12 @@ uninstall-info: uninstall-info-recursive distclean-tags distdir dvi dvi-am html html-am info info-am \ install install-am install-data install-data-am install-exec \ install-exec-am install-info install-info-am install-man \ - install-strip installcheck installcheck-am installdirs \ - installdirs-am maintainer-clean maintainer-clean-generic \ - maintainer-clean-recursive mostlyclean mostlyclean-generic \ - mostlyclean-libtool mostlyclean-local mostlyclean-recursive \ - pdf pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \ - uninstall-info-am + install-strip installcheck installcheck-am installcheck-local \ + installdirs installdirs-am maintainer-clean \ + maintainer-clean-generic maintainer-clean-recursive \ + mostlyclean mostlyclean-generic mostlyclean-libtool \ + mostlyclean-local mostlyclean-recursive pdf pdf-am ps ps-am \ + tags tags-recursive uninstall uninstall-am uninstall-info-am # check-install is a synonym for installcheck. @@ -662,6 +662,17 @@ check-install: installcheck build-tests check-clean check-install check-p check-s check-vfd \ install-doc lib progs tests uninstall-doc _exec_check-s _test +# Install examples +install-examples uninstall-examples: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + +# Check that examples can be successfully built +check-install: + @$(MAKE) $(AM_MAKEFLAGS) installcheck + +installcheck-local: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) diff --git a/hl/c++/Makefile.am b/hl/c++/Makefile.am index a2d4315450..e19cab216f 100644 --- a/hl/c++/Makefile.am +++ b/hl/c++/Makefile.am @@ -20,5 +20,17 @@ include $(top_srcdir)/config/commence.am SUBDIRS=src test +DIST_SUBDIRS=src test examples + +# Install examples +install-examples uninstall-examples: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + +# Check that examples can be successfully built +check-install: + @$(MAKE) $(AM_MAKEFLAGS) installcheck + +installcheck-local: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; include $(top_srcdir)/config/conclude.am diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in index 3042d0ed08..5f3730228b 100644 --- a/hl/c++/Makefile.in +++ b/hl/c++/Makefile.in @@ -72,7 +72,6 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ uninstall-recursive ETAGS = etags CTAGS = ctags -DIST_SUBDIRS = $(SUBDIRS) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) # Set the paths for AFS installs of autotools for Linux machines @@ -312,6 +311,7 @@ TRACE = perl $(top_srcdir)/bin/trace # *.clog are from the MPE option. CHECK_CLEANFILES = *.chkexe *.chklog *.clog SUBDIRS = src test +DIST_SUBDIRS = src test examples # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -604,7 +604,7 @@ install-info: install-info-recursive install-man: -installcheck-am: +installcheck-am: installcheck-local maintainer-clean: maintainer-clean-recursive -rm -f Makefile @@ -634,12 +634,12 @@ uninstall-info: uninstall-info-recursive distclean-tags distdir dvi dvi-am html html-am info info-am \ install install-am install-data install-data-am install-exec \ install-exec-am install-info install-info-am install-man \ - install-strip installcheck installcheck-am installdirs \ - installdirs-am maintainer-clean maintainer-clean-generic \ - maintainer-clean-recursive mostlyclean mostlyclean-generic \ - mostlyclean-libtool mostlyclean-local mostlyclean-recursive \ - pdf pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \ - uninstall-info-am + install-strip installcheck installcheck-am installcheck-local \ + installdirs installdirs-am maintainer-clean \ + maintainer-clean-generic maintainer-clean-recursive \ + mostlyclean mostlyclean-generic mostlyclean-libtool \ + mostlyclean-local mostlyclean-recursive pdf pdf-am ps ps-am \ + tags tags-recursive uninstall uninstall-am uninstall-info-am # check-install is a synonym for installcheck. @@ -656,6 +656,17 @@ check-install: installcheck build-tests check-clean check-install check-p check-s check-vfd \ install-doc lib progs tests uninstall-doc _exec_check-s _test +# Install examples +install-examples uninstall-examples: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + +# Check that examples can be successfully built +check-install: + @$(MAKE) $(AM_MAKEFLAGS) installcheck + +installcheck-local: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) diff --git a/hl/c++/examples/Makefile.am b/hl/c++/examples/Makefile.am new file mode 100644 index 0000000000..85cb35edaa --- /dev/null +++ b/hl/c++/examples/Makefile.am @@ -0,0 +1,48 @@ +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +## +# +# HDF5 Library Examples Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# These are the programs that 'make all' or 'make prog' will build and +# which 'make check' will run. List them in the order they should be run. +TEST_PROG=ptExampleFL ptExampleVL + +# These are the example files to be installed +INSTALL_FILES=ptExampleFL.cpp ptExampleVL.cpp + +# Tell conclude.am that these are C++ tests. +HDF_CXX=yes + +# Where to install examples +EXAMPLEDIR=$(docdir)/hdf5/examples/hl/c++ + +# How to build programs using h5c++ +$(EXTRA_PROG): $(LIBHDF5) $(LIBH5CPP) $(LIBH5CPP_HL) + $(H5CPP) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp + +# List dependencies for each program. Normally, automake would take +# care of this for us, but if we tell automake about the programs it +# will try to build them with the normal C++ compiler, not h5c++. This is +# an inelegant way of solving the problem, unfortunately. +ptExampleFL: ptExampleFL.cpp +ptExampleVL: ptExampleVL.cpp + +include $(top_srcdir)/config/examples.am +include $(top_srcdir)/config/conclude.am diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in new file mode 100644 index 0000000000..b011b3c22f --- /dev/null +++ b/hl/c++/examples/Makefile.in @@ -0,0 +1,760 @@ +# Makefile.in generated by automake 1.9.5 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, +# 2003, 2004, 2005 Free Software Foundation, Inc. +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +# +# HDF5 Library Examples Makefile(.in) +# + +# We can't tell automake about example programs, because they need to be +# built using h5cc (or h5fc, etc.) instead of the standard compilers. +# This creates some extra work for us. +srcdir = @srcdir@ +top_srcdir = @top_srcdir@ +VPATH = @srcdir@ +pkgdatadir = $(datadir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkgincludedir = $(includedir)/@PACKAGE@ +top_builddir = ../../.. +am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd +INSTALL = @INSTALL@ +install_sh_DATA = $(install_sh) -c -m 644 +install_sh_PROGRAM = $(install_sh) -c +install_sh_SCRIPT = $(install_sh) -c +INSTALL_HEADER = $(INSTALL_DATA) +transform = $(program_transform_name) +NORMAL_INSTALL = : +PRE_INSTALL = : +POST_INSTALL = : +NORMAL_UNINSTALL = : +PRE_UNINSTALL = : +POST_UNINSTALL = : +build_triplet = @build@ +host_triplet = @host@ +DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/config/commence.am \ + $(top_srcdir)/config/conclude.am \ + $(top_srcdir)/config/examples.am +subdir = hl/c++/examples +ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 +am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) +mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs +CONFIG_HEADER = $(top_builddir)/src/H5config.h +CONFIG_CLEAN_FILES = +SOURCES = +DIST_SOURCES = +DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) + +# Set the paths for AFS installs of autotools for Linux machines +# Ideally, these tools should never be needed during the build. +ACLOCAL = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/aclocal -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ +AMDEP_FALSE = @AMDEP_FALSE@ +AMDEP_TRUE = @AMDEP_TRUE@ +AMTAR = @AMTAR@ +AM_MAKEFLAGS = @AM_MAKEFLAGS@ +AR = @AR@ +AUTOCONF = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoconf +AUTOHEADER = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoheader +AUTOMAKE = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/automake +AWK = @AWK@ +BUILD_ALL_CONDITIONAL_FALSE = @BUILD_ALL_CONDITIONAL_FALSE@ +BUILD_ALL_CONDITIONAL_TRUE = @BUILD_ALL_CONDITIONAL_TRUE@ +BUILD_CXX_CONDITIONAL_FALSE = @BUILD_CXX_CONDITIONAL_FALSE@ +BUILD_CXX_CONDITIONAL_TRUE = @BUILD_CXX_CONDITIONAL_TRUE@ +BUILD_FORTRAN_CONDITIONAL_FALSE = @BUILD_FORTRAN_CONDITIONAL_FALSE@ +BUILD_FORTRAN_CONDITIONAL_TRUE = @BUILD_FORTRAN_CONDITIONAL_TRUE@ +BUILD_HDF5_HL_CONDITIONAL_FALSE = @BUILD_HDF5_HL_CONDITIONAL_FALSE@ +BUILD_HDF5_HL_CONDITIONAL_TRUE = @BUILD_HDF5_HL_CONDITIONAL_TRUE@ +BUILD_PABLO_CONDITIONAL_FALSE = @BUILD_PABLO_CONDITIONAL_FALSE@ +BUILD_PABLO_CONDITIONAL_TRUE = @BUILD_PABLO_CONDITIONAL_TRUE@ +BUILD_PARALLEL_CONDITIONAL_FALSE = @BUILD_PARALLEL_CONDITIONAL_FALSE@ +BUILD_PARALLEL_CONDITIONAL_TRUE = @BUILD_PARALLEL_CONDITIONAL_TRUE@ +BUILD_SHARED_ONLY_CONDITIONAL_FALSE = @BUILD_SHARED_ONLY_CONDITIONAL_FALSE@ +BUILD_SHARED_ONLY_CONDITIONAL_TRUE = @BUILD_SHARED_ONLY_CONDITIONAL_TRUE@ +BYTESEX = @BYTESEX@ +CC = @CC@ +CCDEPMODE = @CCDEPMODE@ +CC_VERSION = @CC_VERSION@ + +# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5, +# but which shouldn't be exported to h5cc for building other programs. +CFLAGS = @CFLAGS@ @H5_CFLAGS@ +CONFIG_DATE = @CONFIG_DATE@ +CONFIG_MODE = @CONFIG_MODE@ +CONFIG_USER = @CONFIG_USER@ +CPP = @CPP@ +CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@ +CXX = @CXX@ +CXXCPP = @CXXCPP@ +CXXDEPMODE = @CXXDEPMODE@ +CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@ +CXX_SHARED_CONDITIONAL_FALSE = @CXX_SHARED_CONDITIONAL_FALSE@ +CXX_SHARED_CONDITIONAL_TRUE = @CXX_SHARED_CONDITIONAL_TRUE@ +CYGPATH_W = @CYGPATH_W@ +DEBUG_PKG = @DEBUG_PKG@ +DEFS = @DEFS@ +DEPDIR = @DEPDIR@ +DYNAMIC_DIRS = @DYNAMIC_DIRS@ +ECHO = @ECHO@ +ECHO_C = @ECHO_C@ +ECHO_N = @ECHO_N@ +ECHO_T = @ECHO_T@ +EGREP = @EGREP@ +EXEEXT = @EXEEXT@ +F77 = @F77@ + +# Make sure that these variables are exported to the Makefiles +F9XMODEXT = @F9XMODEXT@ +F9XMODFLAG = @F9XMODFLAG@ +F9XSUFFIXFLAG = @F9XSUFFIXFLAG@ +FC = @FC@ +FCFLAGS = @FCFLAGS@ +FCLIBS = @FCLIBS@ +FFLAGS = @FFLAGS@ @H5_FFLAGS@ +FILTERS = @FILTERS@ +FORTRAN_SHARED_CONDITIONAL_FALSE = @FORTRAN_SHARED_CONDITIONAL_FALSE@ +FORTRAN_SHARED_CONDITIONAL_TRUE = @FORTRAN_SHARED_CONDITIONAL_TRUE@ +FSEARCH_DIRS = @FSEARCH_DIRS@ +H5_CFLAGS = @H5_CFLAGS@ +H5_CPPFLAGS = @H5_CPPFLAGS@ +H5_CXXFLAGS = @H5_CXXFLAGS@ +H5_FFLAGS = @H5_FFLAGS@ +H5_VERSION = @H5_VERSION@ +HADDR_T = @HADDR_T@ +HDF5_INTERFACES = @HDF5_INTERFACES@ +HID_T = @HID_T@ +HL = @HL@ +HL_FOR = @HL_FOR@ +HSIZET = @HSIZET@ +HSIZE_T = @HSIZE_T@ +HSSIZE_T = @HSSIZE_T@ +INSTALL_DATA = @INSTALL_DATA@ +INSTALL_PROGRAM = @INSTALL_PROGRAM@ +INSTALL_SCRIPT = @INSTALL_SCRIPT@ +INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ +INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ 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Most machines have this shell, and +# on at least one machine configure fails to detect its existence (janus). +# Also, when HDF5 is configured on one machine but run on another, +# configure's automatic SHELL detection may not work on the build machine. +SHELL = /bin/sh +SIZE_T = @SIZE_T@ +STATIC_SHARED = @STATIC_SHARED@ +STRIP = @STRIP@ +TESTPARALLEL = @TESTPARALLEL@ +TR = @TR@ +TRACE_API = @TRACE_API@ +USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@ +USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@ +USE_FILTER_NBIT = @USE_FILTER_NBIT@ +USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@ +USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@ +USE_FILTER_SZIP = @USE_FILTER_SZIP@ +VERSION = @VERSION@ +ac_ct_AR = @ac_ct_AR@ +ac_ct_CC = @ac_ct_CC@ +ac_ct_CXX = @ac_ct_CXX@ +ac_ct_F77 = @ac_ct_F77@ +ac_ct_FC = @ac_ct_FC@ +ac_ct_RANLIB = @ac_ct_RANLIB@ +ac_ct_STRIP = @ac_ct_STRIP@ +am__fastdepCC_FALSE = @am__fastdepCC_FALSE@ +am__fastdepCC_TRUE = @am__fastdepCC_TRUE@ +am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@ +am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@ +am__include = @am__include@ +am__leading_dot = @am__leading_dot@ +am__quote = @am__quote@ +am__tar = @am__tar@ +am__untar = @am__untar@ +bindir = @bindir@ +build = @build@ +build_alias = @build_alias@ +build_cpu = @build_cpu@ +build_os = @build_os@ +build_vendor = @build_vendor@ +datadir = @datadir@ +exec_prefix = @exec_prefix@ +host = @host@ +host_alias = @host_alias@ +host_cpu = @host_cpu@ +host_os = @host_os@ +host_vendor = @host_vendor@ + +# Install directories that automake doesn't know about +includedir = $(exec_prefix)/include +infodir = @infodir@ +install_sh = @install_sh@ +libdir = @libdir@ +libexecdir = @libexecdir@ +localstatedir = @localstatedir@ +mandir = @mandir@ +mkdir_p = @mkdir_p@ +oldincludedir = @oldincludedir@ +prefix = @prefix@ +program_transform_name = @program_transform_name@ +sbindir = @sbindir@ +sharedstatedir = @sharedstatedir@ +sysconfdir = @sysconfdir@ +target_alias = @target_alias@ + +# Shell commands used in Makefiles +RM = rm -f +CP = cp +TIME = time + +# Some machines need a command to run executables; this is that command +# so that our tests will run. +# We use RUNTESTS instead of RUNSERIAL directly because it may be that +# some tests need to be run with a different command. 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Normally, automake would take +# care of this for us, but if we tell automake about the programs it +# will try to build them with the normal C++ compiler, not h5c++. This is +# an inelegant way of solving the problem, unfortunately. +ptExampleFL: ptExampleFL.cpp +ptExampleVL: ptExampleVL.cpp + +# How to create EXAMPLEDIR if it doesn't already exist +$(EXAMPLEDIR): + -$(top_srcdir)/bin/mkdirs $@ + +# Install and uninstall rules. 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then \ + cmd=$(@:.chkexe_=);\ + tname=`basename $$cmd`;\ + chkname=`basename $(@:.chkexe_=.chkexe)`;\ + log=`basename $(@:.chkexe_=.chklog)`; \ + echo "============================"; \ + if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \ + echo "No need to test $${tname} again."; \ + else \ + echo "============================" > $${log}; \ + if test "X$(HDF_FORTRAN)" = "Xyes"; then \ + echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \ + echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + elif test "X$(HDF_CXX)" = "Xyes"; then \ + echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \ + echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + else \ + echo "Testing $${tname} $(TEST_FLAGS)"; \ + echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + echo "============================" >> $${log}; \ + RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)" \ + srcdir="$(srcdir)" \ + $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $${chkname} || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + echo "" >> $${log}; \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + echo "Finished testing $${tname} $(TEST_FLAGS)"; \ + cat $${log}; \ + fi; \ + echo "============================"; \ + fi + +# Actual execution of check-p. +build-check-p: $(LIB) $(PROGS) $(TESTS) + @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ + echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ + fi + @if test -n "$(TEST_PROG_PARA)"; then \ + echo "**** Hint ****"; \ + echo "Parallel test files reside in the current directory" \ + "by default."; \ + echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \ + echo " HDF5_PARAPREFIX=/PFS/user/me"; \ + echo " export HDF5_PARAPREFIX"; \ + echo " make check"; \ + echo "**** end of Hint ****"; \ + fi + @for test in $(TEST_PROG_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \ + RUNTESTS="$(RUNPARALLEL)" || exit 1; \ + fi; \ + done + @for test in $(TEST_SCRIPT_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \ + fi; \ + done + @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ + echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ + fi + +# Run test with different Virtual File Driver +check-vfd: + @for vfd in $(VFD_LIST) dummy; do \ + if test $$vfd != dummy; then \ + echo "============================"; \ + echo "Testing Virtual File Driver $$vfd"; \ + echo "============================"; \ + HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check; \ + fi; \ + done +# Tell versions [3.59,3.63) of GNU make to not export all variables. +# Otherwise a system limit (for SysV at least) may be exceeded. +.NOEXPORT: diff --git a/hl/c++/examples/ptExampleFL.cpp b/hl/c++/examples/ptExampleFL.cpp new file mode 100644 index 0000000000..aa05f4e588 --- /dev/null +++ b/hl/c++/examples/ptExampleFL.cpp @@ -0,0 +1,89 @@ + /* Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include "H5PacketTable.h" + +/*------------------------------------------------------------------------- + * Packet Table Fixed-Length Example + * + * Example program that creates a packet table and performs + * writes and reads. + * + *------------------------------------------------------------------------- + */ + +int main(void) +{ + herr_t err; /* Return value from function calls */ + hid_t fileID; /* HDF5 identifier for file */ + hsize_t count; /* Number of records in table */ + + /* Buffers to hold data */ + int readBuffer[5]; + int writeBuffer[5]; + + /* Initialize buffers */ + for(int x=0; x<5; x++) + { + writeBuffer[x]=x; + readBuffer[x] = -1; + } + + /* Create a new HDF5 file */ + fileID = H5Fcreate("PTcppexampleFL.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if(fileID <0) + fprintf(stderr, "Couldn't create file.\n"); + + /* Create a fixed-length packet table. */ + FL_PacketTable ptable(fileID, "/examplePacketTable", H5T_NATIVE_INT, 1); + if(! ptable.IsValid()) + fprintf(stderr, "Unable to create packet table."); + + /* Append five packets to the packet table, one at a time */ + for(int x=0; x<5; x++) + { + err = ptable.AppendPacket( &(writeBuffer[x]) ); + if(err<0) + fprintf(stderr, "Error adding record."); + } + + /* Get the number of packets in the packet table. This should be five. */ + count = ptable.GetPacketCount(err); + if(err < 0) + fprintf(stderr, "Error getting packet count."); + + printf("Number of packets in packet table after five appends: %d\n", count); + + /* Initialize packet table's "current record" */ + ptable.ResetIndex(); + + /* Iterate through packets, read each one back */ + for(int x=0; x<5; x++) + { + err = ptable.GetNextPacket( &(readBuffer[x]) ); + if(err < 0) + fprintf(stderr, "Error reading record."); + + printf("Packet %d's value is %d.\n", x, readBuffer[x]); + } + + /* The packet table will close automatically when its object goes */ + /* out of scope. */ + + err = H5Fclose(fileID); + if( err < 0 ) + fprintf(stderr, "Failed to close file.\n"); + + return 0; +} + diff --git a/hl/c++/examples/ptExampleVL.cpp b/hl/c++/examples/ptExampleVL.cpp new file mode 100644 index 0000000000..0fbf9d5e9a --- /dev/null +++ b/hl/c++/examples/ptExampleVL.cpp @@ -0,0 +1,109 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include "H5PacketTable.h" + +/*------------------------------------------------------------------------- + * Packet Table Variable-Length Example + * + * Example program that creates a packet table and performs + * writes and reads. + * + *------------------------------------------------------------------------- + */ + +int main(void) +{ + herr_t err; /* Return value from function calls */ + hid_t fileID; /* HDF5 identifier for file */ + hsize_t count; /* Number of records in table */ + int x; /* Loop variable */ + + /* This example has two different sizes of "record": longs and shorts */ + long longBuffer[5]; + short shortBuffer[5]; + + /* Buffer of hvl_t structs to read back records */ + hvl_t readBuffer[5]; + + /* Initialize buffers */ + for(x=0; x<5; x++) + { + longBuffer[x] = -x; + shortBuffer[x] = x; + } + + /* Create a new HDF5 file */ + fileID = H5Fcreate("PTcppexampleVL.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if(fileID <0) + fprintf(stderr, "Couldn't create file.\n"); + + /* Create a variable-length packet table. */ + VL_PacketTable ptable(fileID, "/examplePacketTable", 1); + + if(! ptable.IsValid()) + fprintf(stderr, "Unable to create packet table."); + + /* Append five packets to the packet table. */ + /* In C++, there is no need to package data into hvl_t structs. */ + err = ptable.AppendPacket( &(longBuffer[0]), sizeof(long)); + if(err < 0) + fprintf(stderr, "Error adding record."); + err = ptable.AppendPacket( &(shortBuffer[1]), sizeof(short)); + if(err < 0) + fprintf(stderr, "Error adding record."); + err = ptable.AppendPacket( &(longBuffer[2]), sizeof(long)); + if(err < 0) + fprintf(stderr, "Error adding record."); + err = ptable.AppendPacket( &(longBuffer[3]), sizeof(long)); + if(err < 0) + fprintf(stderr, "Error adding record."); + err = ptable.AppendPacket( &(shortBuffer[4]), sizeof(short)); + if(err < 0) + fprintf(stderr, "Error adding record."); + + /* Get the number of packets in the packet table. This should be five. */ + count = ptable.GetPacketCount(err); + if(err < 0) + fprintf(stderr, "Error getting packet count."); + + printf("Number of packets in packet table after five appends: %d\n", count); + + /* Initialize packet table's "current record" */ + ptable.ResetIndex(); + + /* Iterate through packets, read each one back */ + for(int x=0; x<5; x++) + { + err = ptable.GetNextPacket( &(readBuffer[x]) ); + if(err < 0) + fprintf(stderr, "Error reading record."); + + printf("Packet %d's length is %d.\n", x, readBuffer[x].len); + if(readBuffer[x].len == sizeof(long)) + printf("Packet %d's value is %d.\n", x, *((long *) readBuffer[x].p) ); + else + printf("Packet %d's value is %d.\n", x, *((short *) readBuffer[x].p) ); + } + + /* The packet table will close automatically when its object goes */ + /* out of scope. */ + + err = H5Fclose(fileID); + if( err < 0 ) + fprintf(stderr, "Failed to close file.\n"); + + return 0; +} + diff --git a/hl/examples/Makefile.am b/hl/examples/Makefile.am new file mode 100644 index 0000000000..6a436af005 --- /dev/null +++ b/hl/examples/Makefile.am @@ -0,0 +1,58 @@ +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +## +# +# HDF5 Library Examples Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +if BUILD_PARALLEL_CONDITIONAL + TEST_PROG_PARA = +endif + +# Example programs. +# Don't tell automake about them, because if it knew they were programs, +# it would try to compile them instead of using the h5cc script. +# Use the boilerplate in config/examples.am instead. +TEST_PROG = ptExampleFL ptExampleVL + +# Install files +# List all file that should be installed in examples directory +INSTALL_FILES = ptExampleFL.c ptExampleVL.c + +# Additional dependencies for each program are listed below. +$(EXTRA_PROG): $(LIBHDF5) $(LIBH5_HL) +if BUILD_PARALLEL_CONDITIONAL + $(H5CC_PP) $(CFLAGS) -o $@ $(srcdir)/$@.c; +else + $(H5CC) $(CFLAGS) -o $@ $(srcdir)/$@.c; +endif + +# Example directory +EXAMPLEDIR=$(docdir)/hdf5/examples/hl/c + +# List dependencies for each program. Normally, automake would take +# care of this for us, but if we tell automake about the programs it +# will try to build them with the normal C compiler, not h5cc. This is +# an inelegant way of solving the problem. +# All programs share the same build rule and a dependency on the main hdf5 +# library above. +ptExampleFL: $(srcdir)/ptExampleFL.c +ptExampleVL: $(srcdir)/ptExampleVL.c + +include $(top_srcdir)/config/examples.am +include $(top_srcdir)/config/conclude.am diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in new file mode 100644 index 0000000000..a97b677d69 --- /dev/null +++ b/hl/examples/Makefile.in @@ -0,0 +1,764 @@ +# Makefile.in generated by automake 1.9.5 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, +# 2003, 2004, 2005 Free Software Foundation, Inc. +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +# +# HDF5 Library Examples Makefile(.in) +# + +# We can't tell automake about example programs, because they need to be +# built using h5cc (or h5fc, etc.) instead of the standard compilers. +# This creates some extra work for us. +srcdir = @srcdir@ +top_srcdir = @top_srcdir@ +VPATH = @srcdir@ +pkgdatadir = $(datadir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkgincludedir = $(includedir)/@PACKAGE@ +top_builddir = ../.. +am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd +INSTALL = @INSTALL@ +install_sh_DATA = $(install_sh) -c -m 644 +install_sh_PROGRAM = $(install_sh) -c +install_sh_SCRIPT = $(install_sh) -c +INSTALL_HEADER = $(INSTALL_DATA) +transform = $(program_transform_name) +NORMAL_INSTALL = : +PRE_INSTALL = : +POST_INSTALL = : +NORMAL_UNINSTALL = : +PRE_UNINSTALL = : +POST_UNINSTALL = : +build_triplet = @build@ +host_triplet = @host@ +DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/config/commence.am \ + $(top_srcdir)/config/conclude.am \ + $(top_srcdir)/config/examples.am +subdir = hl/examples +ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 +am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) +mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs +CONFIG_HEADER = $(top_builddir)/src/H5config.h +CONFIG_CLEAN_FILES = +SOURCES = +DIST_SOURCES = +DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) + +# Set the paths for AFS installs of autotools for Linux machines +# Ideally, these tools should never be needed during the build. +ACLOCAL = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/aclocal -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ +AMDEP_FALSE = @AMDEP_FALSE@ +AMDEP_TRUE = @AMDEP_TRUE@ +AMTAR = @AMTAR@ +AM_MAKEFLAGS = @AM_MAKEFLAGS@ +AR = @AR@ +AUTOCONF = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoconf +AUTOHEADER = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoheader +AUTOMAKE = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/automake +AWK = @AWK@ +BUILD_ALL_CONDITIONAL_FALSE = @BUILD_ALL_CONDITIONAL_FALSE@ +BUILD_ALL_CONDITIONAL_TRUE = @BUILD_ALL_CONDITIONAL_TRUE@ +BUILD_CXX_CONDITIONAL_FALSE = @BUILD_CXX_CONDITIONAL_FALSE@ +BUILD_CXX_CONDITIONAL_TRUE = @BUILD_CXX_CONDITIONAL_TRUE@ +BUILD_FORTRAN_CONDITIONAL_FALSE = @BUILD_FORTRAN_CONDITIONAL_FALSE@ +BUILD_FORTRAN_CONDITIONAL_TRUE = @BUILD_FORTRAN_CONDITIONAL_TRUE@ +BUILD_HDF5_HL_CONDITIONAL_FALSE = @BUILD_HDF5_HL_CONDITIONAL_FALSE@ +BUILD_HDF5_HL_CONDITIONAL_TRUE = @BUILD_HDF5_HL_CONDITIONAL_TRUE@ +BUILD_PABLO_CONDITIONAL_FALSE = @BUILD_PABLO_CONDITIONAL_FALSE@ +BUILD_PABLO_CONDITIONAL_TRUE = @BUILD_PABLO_CONDITIONAL_TRUE@ +BUILD_PARALLEL_CONDITIONAL_FALSE = @BUILD_PARALLEL_CONDITIONAL_FALSE@ +BUILD_PARALLEL_CONDITIONAL_TRUE = @BUILD_PARALLEL_CONDITIONAL_TRUE@ +BUILD_SHARED_ONLY_CONDITIONAL_FALSE = @BUILD_SHARED_ONLY_CONDITIONAL_FALSE@ +BUILD_SHARED_ONLY_CONDITIONAL_TRUE = @BUILD_SHARED_ONLY_CONDITIONAL_TRUE@ +BYTESEX = @BYTESEX@ +CC = @CC@ +CCDEPMODE = @CCDEPMODE@ +CC_VERSION = @CC_VERSION@ + +# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5, +# but which shouldn't be exported to h5cc for building other programs. +CFLAGS = @CFLAGS@ @H5_CFLAGS@ +CONFIG_DATE = @CONFIG_DATE@ +CONFIG_MODE = @CONFIG_MODE@ +CONFIG_USER = @CONFIG_USER@ +CPP = @CPP@ +CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@ +CXX = @CXX@ +CXXCPP = @CXXCPP@ +CXXDEPMODE = @CXXDEPMODE@ +CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@ +CXX_SHARED_CONDITIONAL_FALSE = @CXX_SHARED_CONDITIONAL_FALSE@ +CXX_SHARED_CONDITIONAL_TRUE = @CXX_SHARED_CONDITIONAL_TRUE@ +CYGPATH_W = @CYGPATH_W@ +DEBUG_PKG = @DEBUG_PKG@ +DEFS = @DEFS@ +DEPDIR = @DEPDIR@ +DYNAMIC_DIRS = @DYNAMIC_DIRS@ +ECHO = @ECHO@ +ECHO_C = @ECHO_C@ +ECHO_N = @ECHO_N@ +ECHO_T = @ECHO_T@ +EGREP = @EGREP@ +EXEEXT = @EXEEXT@ +F77 = @F77@ + +# Make sure that these variables are exported to the Makefiles +F9XMODEXT = @F9XMODEXT@ +F9XMODFLAG = @F9XMODFLAG@ +F9XSUFFIXFLAG = @F9XSUFFIXFLAG@ +FC = @FC@ +FCFLAGS = @FCFLAGS@ +FCLIBS = @FCLIBS@ +FFLAGS = @FFLAGS@ @H5_FFLAGS@ +FILTERS = @FILTERS@ +FORTRAN_SHARED_CONDITIONAL_FALSE = @FORTRAN_SHARED_CONDITIONAL_FALSE@ +FORTRAN_SHARED_CONDITIONAL_TRUE = @FORTRAN_SHARED_CONDITIONAL_TRUE@ +FSEARCH_DIRS = @FSEARCH_DIRS@ +H5_CFLAGS = @H5_CFLAGS@ +H5_CPPFLAGS = @H5_CPPFLAGS@ +H5_CXXFLAGS = @H5_CXXFLAGS@ +H5_FFLAGS = @H5_FFLAGS@ +H5_VERSION = @H5_VERSION@ +HADDR_T = @HADDR_T@ +HDF5_INTERFACES = @HDF5_INTERFACES@ +HID_T = @HID_T@ +HL = @HL@ +HL_FOR = @HL_FOR@ +HSIZET = @HSIZET@ +HSIZE_T = @HSIZE_T@ +HSSIZE_T = @HSSIZE_T@ +INSTALL_DATA = @INSTALL_DATA@ +INSTALL_PROGRAM = @INSTALL_PROGRAM@ +INSTALL_SCRIPT = @INSTALL_SCRIPT@ +INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ +INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ 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Most machines have this shell, and +# on at least one machine configure fails to detect its existence (janus). +# Also, when HDF5 is configured on one machine but run on another, +# configure's automatic SHELL detection may not work on the build machine. +SHELL = /bin/sh +SIZE_T = @SIZE_T@ +STATIC_SHARED = @STATIC_SHARED@ +STRIP = @STRIP@ +TESTPARALLEL = @TESTPARALLEL@ +TR = @TR@ +TRACE_API = @TRACE_API@ +USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@ +USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@ +USE_FILTER_NBIT = @USE_FILTER_NBIT@ +USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@ +USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@ +USE_FILTER_SZIP = @USE_FILTER_SZIP@ +VERSION = @VERSION@ +ac_ct_AR = @ac_ct_AR@ +ac_ct_CC = @ac_ct_CC@ +ac_ct_CXX = @ac_ct_CXX@ +ac_ct_F77 = @ac_ct_F77@ +ac_ct_FC = @ac_ct_FC@ +ac_ct_RANLIB = @ac_ct_RANLIB@ +ac_ct_STRIP = @ac_ct_STRIP@ +am__fastdepCC_FALSE = @am__fastdepCC_FALSE@ +am__fastdepCC_TRUE = @am__fastdepCC_TRUE@ +am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@ +am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@ +am__include = @am__include@ +am__leading_dot = @am__leading_dot@ +am__quote = @am__quote@ +am__tar = @am__tar@ +am__untar = @am__untar@ +bindir = @bindir@ +build = @build@ +build_alias = @build_alias@ +build_cpu = @build_cpu@ +build_os = @build_os@ +build_vendor = @build_vendor@ +datadir = @datadir@ +exec_prefix = @exec_prefix@ +host = @host@ +host_alias = @host_alias@ +host_cpu = @host_cpu@ +host_os = @host_os@ +host_vendor = @host_vendor@ + +# Install directories that automake doesn't know about +includedir = $(exec_prefix)/include +infodir = @infodir@ +install_sh = @install_sh@ +libdir = @libdir@ +libexecdir = @libexecdir@ +localstatedir = @localstatedir@ +mandir = @mandir@ +mkdir_p = @mkdir_p@ +oldincludedir = @oldincludedir@ +prefix = @prefix@ +program_transform_name = @program_transform_name@ +sbindir = @sbindir@ +sharedstatedir = @sharedstatedir@ +sysconfdir = @sysconfdir@ +target_alias = @target_alias@ + +# Shell commands used in Makefiles +RM = rm -f +CP = cp +TIME = time + +# Some machines need a command to run executables; this is that command +# so that our tests will run. +# We use RUNTESTS instead of RUNSERIAL directly because it may be that +# some tests need to be run with a different command. 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this is used on source files from the C library to +# insert tracing macros. +TRACE = perl $(top_srcdir)/bin/trace + +# .chkexe files are used to mark tests that have run successfully. +# .chklog files are output from those tests. +# *.clog are from the MPE option. +CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 +@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_PROG_PARA = + +# Example programs. +# Don't tell automake about them, because if it knew they were programs, +# it would try to compile them instead of using the h5cc script. +# Use the boilerplate in config/examples.am instead. +TEST_PROG = ptExampleFL ptExampleVL + +# Install files +# List all file that should be installed in examples directory +INSTALL_FILES = ptExampleFL.c ptExampleVL.c + +# Example directory +EXAMPLEDIR = $(docdir)/hdf5/examples/hl/c + +# Assume that all tests in this directory are examples, and tell +# conclude.am when to build them. +EXAMPLE_PROG = $(TEST_PROG_PARA) $(TEST_PROG) +EXTRA_PROG = $(EXAMPLE_PROG) + +# We need to tell automake what to clean +MOSTLYCLEANFILES = *.raw *.meta *.o +CLEANFILES = $(TEST_PROG) $(TEST_PROG_PARA) + +# Automake needs to be taught how to build lib, progs, and tests targets. +# These will be filled in automatically for the most part (e.g., +# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and +# EXTRA_TEST variables are supplied to allow the user to force targets to +# be built at certain times. +LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ + $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) + +PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ + $(EXTRA_PROG) + +TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) +TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) +TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) +TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_) +all: all-am + +.SUFFIXES: +$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/examples.am $(top_srcdir)/config/conclude.am $(am__configure_deps) + @for dep in $?; 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+@BUILD_PARALLEL_CONDITIONAL_FALSE@ $(H5CC) $(CFLAGS) -o $@ $(srcdir)/$@.c; + +# List dependencies for each program. Normally, automake would take +# care of this for us, but if we tell automake about the programs it +# will try to build them with the normal C compiler, not h5cc. This is +# an inelegant way of solving the problem. +# All programs share the same build rule and a dependency on the main hdf5 +# library above. +ptExampleFL: $(srcdir)/ptExampleFL.c +ptExampleVL: $(srcdir)/ptExampleVL.c + +# How to create EXAMPLEDIR if it doesn't already exist +$(EXAMPLEDIR): + -$(top_srcdir)/bin/mkdirs $@ + +# Install and uninstall rules. We install the source files, not the +# example programs themselves. +install-data-local: + @$(MAKE) $(AM_MAKEFLAGS) install-examples +uninstall-local: + @$(MAKE) $(AM_MAKEFLAGS) uninstall-examples + +install-examples: $(EXAMPLEDIR) $(INSTALL_FILES) + @for f in X $(INSTALL_FILES); do \ + if test $$f != X; then \ + (set -x; $(INSTALL) $(srcdir)/$$f $(EXAMPLEDIR)/. || exit 1);\ + fi; \ + done + +uninstall-examples: + @if test -n "$(INSTALL_FILES)" -a -d $(EXAMPLEDIR); then \ + set -x; cd $(EXAMPLEDIR) && $(RM) $(INSTALL_FILES); \ + fi + +installcheck-local: + @$(MAKE) $(AM_MAKEFLAGS) check + +# lib/progs/tests targets recurse into subdirectories. build-* targets +# build files in this directory. +build-lib: $(LIB) +build-progs: $(LIB) $(PROGS) +build-tests: $(LIB) $(PROGS) $(TESTS) + +# General rule for recursive building targets. +# BUILT_SOURCES contain targets that need to be built before anything else +# in the directory (e.g., for Fortran type detection) +lib progs tests check-s check-p :: $(BUILT_SOURCES) + @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; + @for d in X $(SUBDIRS); do \ + if test $$d != X && test $$d != .; then \ + (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \ + fi; \ + done + +# General rule for recursive cleaning targets. Like the rule above, +# but doesn't require building BUILT_SOURCES. +check-clean :: + @$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1; + @for d in X $(SUBDIRS); do \ + if test $$d != X && test $$d != .; then \ + (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; \ + fi; \ + done +# Tell Automake to build tests when the user types `make all' (this is +# not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since +# Automake won't build them automatically, either. +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) + +# make install-doc doesn't do anything outside of doc directory, but +# Makefiles should recognize it. +# UPDATE: docs no longer reside in this build tree, so this target +# is depreciated. +install-doc uninstall-doc: + @echo "Nothing to be done." + +# clean up files generated by tests so they can be re-run. +build-check-clean: + $(RM) $(CHECK_CLEANFILES) + +# run check-clean whenever mostlyclean is run +mostlyclean-local: build-check-clean + +# Run each test in order, passing $(TEST_FLAGS) to the program. +# Since tests are done in a shell loop, "make -i" does apply inside it. +# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. +# The timestamps give a rough idea how much time the tests use. +# +# Note that targets in TESTS (defined above) will be built when the user +# types 'make tests' or 'make check', but only programs in TEST_PROG, +# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. +check-TESTS: test + +test _test: + @$(MAKE) build-check-s + @$(MAKE) build-check-p + +# Actual execution of check-s. +build-check-s: $(LIB) $(PROGS) $(TESTS) + @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; 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\ + echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + elif test "X$(HDF_CXX)" = "Xyes"; then \ + echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \ + echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + else \ + echo "Testing $${tname} $(TEST_FLAGS)"; \ + echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + echo "============================" >> $${log}; \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNTESTS) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + echo "" >> $${log}; \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + echo "Finished testing $${tname} $(TEST_FLAGS)"; \ + cat $${log}; \ + fi; \ + echo "============================"; \ + fi + +# The dummysh.chkexe here prevents the target from being +# empty if there are no tests in the current directory. +# $${log} is the log file. +# $${tname} is the name of test. +$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: + @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \ + cmd=$(@:.chkexe_=);\ + tname=`basename $$cmd`;\ + chkname=`basename $(@:.chkexe_=.chkexe)`;\ + log=`basename $(@:.chkexe_=.chklog)`; \ + echo "============================"; \ + if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \ + echo "No need to test $${tname} again."; \ + else \ + echo "============================" > $${log}; \ + if test "X$(HDF_FORTRAN)" = "Xyes"; then \ + echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \ + echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + elif test "X$(HDF_CXX)" = "Xyes"; then \ + echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \ + echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + else \ + echo "Testing $${tname} $(TEST_FLAGS)"; \ + echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + echo "============================" >> $${log}; \ + RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)" \ + srcdir="$(srcdir)" \ + $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $${chkname} || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + echo "" >> $${log}; \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + echo "Finished testing $${tname} $(TEST_FLAGS)"; \ + cat $${log}; \ + fi; \ + echo "============================"; \ + fi + +# Actual execution of check-p. +build-check-p: $(LIB) $(PROGS) $(TESTS) + @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ + echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ + fi + @if test -n "$(TEST_PROG_PARA)"; then \ + echo "**** Hint ****"; \ + echo "Parallel test files reside in the current directory" \ + "by default."; \ + echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \ + echo " HDF5_PARAPREFIX=/PFS/user/me"; \ + echo " export HDF5_PARAPREFIX"; \ + echo " make check"; \ + echo "**** end of Hint ****"; \ + fi + @for test in $(TEST_PROG_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \ + RUNTESTS="$(RUNPARALLEL)" || exit 1; \ + fi; \ + done + @for test in $(TEST_SCRIPT_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \ + fi; \ + done + @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ + echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ + fi + +# Run test with different Virtual File Driver +check-vfd: + @for vfd in $(VFD_LIST) dummy; do \ + if test $$vfd != dummy; then \ + echo "============================"; \ + echo "Testing Virtual File Driver $$vfd"; \ + echo "============================"; \ + HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check; \ + fi; \ + done +# Tell versions [3.59,3.63) of GNU make to not export all variables. +# Otherwise a system limit (for SysV at least) may be exceeded. +.NOEXPORT: diff --git a/hl/examples/ptExampleFL.c b/hl/examples/ptExampleFL.c new file mode 100644 index 0000000000..fb93d018aa --- /dev/null +++ b/hl/examples/ptExampleFL.c @@ -0,0 +1,102 @@ +/**************************************************************************** + * NCSA HDF * + * Scientific Data Technologies * + * National Center for Supercomputing Applications * + * University of Illinois at Urbana-Champaign * + * 605 E. Springfield, Champaign IL 61820 * + * * + * For conditions of distribution and use, see the accompanying * + * hdf/COPYING f. * + * * + ****************************************************************************/ + +#include "H5PT.h" +#include + +/*------------------------------------------------------------------------- + * Packet Table Fixed-Length Example + * + * Example program that creates a packet table and performs + * writes and reads. + * + *------------------------------------------------------------------------- + */ + +int main(void) +{ + hid_t fid; /* File identifier */ + hid_t ptable; /* Packet table identifier */ + + herr_t err; /* Function return status */ + hsize_t count; /* Number of records in the table */ + + int x; /* Loop variable */ + + /* Buffers to hold data */ + int writeBuffer[5]; + int readBuffer[5]; + + /* Initialize buffers */ + for(x=0; x<5; x++) + { + writeBuffer[x]=x; + readBuffer[x] = -1; + } + + /* Create a file using default properties */ + fid=H5Fcreate("packet_table_FLexample.h5",H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT); + + /* Create a fixed-length packet table within the file */ + /* This table's "packets" will be simple integers. */ + ptable = H5PTcreate_fl(fid, "Packet Test Dataset", H5T_NATIVE_INT, 1); + if(ptable == H5I_INVALID_HID) + goto out; + + /* Write one packet to the packet table */ + err = H5PTappend(ptable, 1, &(writeBuffer[0]) ); + if(err < 0) + goto out; + + /* Write several packets to the packet table */ + err = H5PTappend(ptable, 4, &(writeBuffer[1]) ); + if(err < 0) + goto out; + + /* Get the number of packets in the packet table. This should be five. */ + err = H5PTget_num_packets(ptable, &count); + if(err < 0) + goto out; + + printf("Number of packets in packet table after five appends: %d\n", count); + + /* Initialize packet table's "current record" */ + err = H5PTcreate_index(ptable); + if(err < 0) + goto out; + + /* Iterate through packets, read each one back */ + for(x=0; x<5; x++) + { + err = H5PTget_next(ptable, 1, &(readBuffer[x]) ); + if(err < 0) + goto out; + + printf("Packet %d's value is %d\n", x, readBuffer[x]); + } + + /* Close the packet table */ + err = H5PTclose(ptable); + if(err < 0) + goto out; + + /* Close the file */ + H5Fclose(fid); + + return 0; + + out: /* An error has occurred. Clean up and exit. */ + H5PTclose(ptable); + H5Fclose(fid); + return -1; +} + diff --git a/hl/examples/ptExampleVL.c b/hl/examples/ptExampleVL.c new file mode 100644 index 0000000000..68a01c7791 --- /dev/null +++ b/hl/examples/ptExampleVL.c @@ -0,0 +1,118 @@ +/**************************************************************************** + * NCSA HDF * + * Scientific Data Technologies * + * National Center for Supercomputing Applications * + * University of Illinois at Urbana-Champaign * + * 605 E. Springfield, Champaign IL 61820 * + * * + * For conditions of distribution and use, see the accompanying * + * hdf/COPYING f. * + * * + ****************************************************************************/ + +#include "H5PT.h" +#include + +/*------------------------------------------------------------------------- + * Packet Table Variable-Length Example + * + * Example program that creates a variable-length packet table and performs + * writes and reads. + * + *------------------------------------------------------------------------- + */ + +int main(void) +{ + hid_t fid; /* File identifier */ + hid_t ptable; /* Packet table identifier */ + + herr_t err; /* Function return status */ + hsize_t count; /* Number of records in the table */ + int x; /* Loop variable */ + + /* Buffers to hold data */ + hvl_t writeBuffer[5]; + hvl_t readBuffer[5]; + + /* This example has two different sizes of "record": longs and shorts */ + long longBuffer[5]; + short shortBuffer[5]; + + /* Initialize buffers */ + for(x=0; x<5; x++) + { + longBuffer[x] = -x; + shortBuffer[x] = x; + } + + /* Fill the write buffer with a mix of longs and shorts */ + /* We need to supply the length of each record and a pointer to */ + /* the beginning of each record. */ + writeBuffer[0].len = sizeof(long); + writeBuffer[0].p = &(longBuffer[0]); + writeBuffer[1].len = sizeof(short); + writeBuffer[1].p = &(shortBuffer[1]); + writeBuffer[2].len = sizeof(long); + writeBuffer[2].p = &(longBuffer[2]); + writeBuffer[3].len = sizeof(long); + writeBuffer[3].p = &(longBuffer[3]); + writeBuffer[4].len = sizeof(short); + writeBuffer[4].p = &(shortBuffer[4]); + + /* Create a file using default properties */ + fid=H5Fcreate("packet_table_VLexample.h5",H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT); + + /* Create a variable-length packet table within the file */ + ptable = H5PTcreate_vl(fid, "Packet Test Dataset", 1); + if(ptable == H5I_INVALID_HID) + goto out; + + /* Write the entire buffer to the packet table */ + err = H5PTappend(ptable, 5, writeBuffer ); + if(err < 0) + goto out; + + /* Get the number of packets in the packet table. This should be five. */ + err = H5PTget_num_packets(ptable, &count); + if(err < 0) + goto out; + + printf("Number of packets in packet table after five appends: %d\n", count); + + /* Read all five packets back */ + err = H5PTread_packets(ptable, 0, 5, readBuffer ); + if(err < 0) + goto out; + + for(x=0; x<5; x++) + { + printf("Packet %d's length is %d\n", x, readBuffer[x].len); + if(readBuffer[x].len == sizeof(long)) + printf("Packet %d's value is %d\n", x, *( (long *) readBuffer[x].p) ); + else + printf("Packet %d's value is %d\n", x, *( (short *) readBuffer[x].p) ); + } + + /* Before we close the packet table, we must free the memory that */ + /* the pointers in readBuffer point to. */ + err = H5PTfree_vlen_readbuff(ptable, 5, readBuffer); + if(err < 0) + goto out; + + /* Close the packet table */ + err = H5PTclose(ptable); + if(err < 0) + goto out; + + /* Close the file */ + H5Fclose(fid); + + return 0; + + out: /* An error has occurred. Clean up and exit. */ + fprintf(stderr, "An error has occurred!\n"); + H5PTclose(ptable); + H5Fclose(fid); + return -1; +} diff --git a/hl/fortran/Makefile.am b/hl/fortran/Makefile.am index 306176c0eb..e6de85e645 100644 --- a/hl/fortran/Makefile.am +++ b/hl/fortran/Makefile.am @@ -25,5 +25,17 @@ include $(top_srcdir)/config/commence.am SUBDIRS=src test +DIST_SUBDIRS=src test + +# Install examples +install-examples uninstall-examples: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + +# Check that examples can be successfully built +check-install: + @$(MAKE) $(AM_MAKEFLAGS) installcheck + +installcheck-local: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; include $(top_srcdir)/config/conclude.am diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in index d39eb79505..dc59657dc5 100644 --- a/hl/fortran/Makefile.in +++ b/hl/fortran/Makefile.in @@ -76,7 +76,6 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ uninstall-recursive ETAGS = etags CTAGS = ctags -DIST_SUBDIRS = $(SUBDIRS) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) # Set the paths for AFS installs of autotools for Linux machines @@ -316,6 +315,7 @@ TRACE = perl $(top_srcdir)/bin/trace # *.clog are from the MPE option. CHECK_CLEANFILES = *.chkexe *.chklog *.clog SUBDIRS = src test +DIST_SUBDIRS = src test # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., @@ -608,7 +608,7 @@ install-info: install-info-recursive install-man: -installcheck-am: +installcheck-am: installcheck-local maintainer-clean: maintainer-clean-recursive -rm -f Makefile @@ -638,12 +638,12 @@ uninstall-info: uninstall-info-recursive distclean-tags distdir dvi dvi-am html html-am info info-am \ install install-am install-data install-data-am install-exec \ install-exec-am install-info install-info-am install-man \ - install-strip installcheck installcheck-am installdirs \ - installdirs-am maintainer-clean maintainer-clean-generic \ - maintainer-clean-recursive mostlyclean mostlyclean-generic \ - mostlyclean-libtool mostlyclean-local mostlyclean-recursive \ - pdf pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \ - uninstall-info-am + install-strip installcheck installcheck-am installcheck-local \ + installdirs installdirs-am maintainer-clean \ + maintainer-clean-generic maintainer-clean-recursive \ + mostlyclean mostlyclean-generic mostlyclean-libtool \ + mostlyclean-local mostlyclean-recursive pdf pdf-am ps ps-am \ + tags tags-recursive uninstall uninstall-am uninstall-info-am # check-install is a synonym for installcheck. @@ -660,6 +660,17 @@ check-install: installcheck build-tests check-clean check-install check-p check-s check-vfd \ install-doc lib progs tests uninstall-doc _exec_check-s _test +# Install examples +install-examples uninstall-examples: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + +# Check that examples can be successfully built +check-install: + @$(MAKE) $(AM_MAKEFLAGS) installcheck + +installcheck-local: + @(cd examples && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1; + # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) diff --git a/hl/fortran/examples/Makefile.am b/hl/fortran/examples/Makefile.am new file mode 100644 index 0000000000..168d677338 --- /dev/null +++ b/hl/fortran/examples/Makefile.am @@ -0,0 +1,61 @@ +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +## +# +# HDF5-Fortran Examples Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# Compile parallel fortran examples only if parallel is enabled +if BUILD_PARALLEL_CONDITIONAL + TEST_PROG_PARA= +endif + +# These are the programs that 'make all' or 'make tests' will build and +# that 'make check' will run. List them in the order in which they should +# be run. +# We don't tell automake about these programs so that it doesn't try to +# compile them with the regular fortran compiler. +TEST_PROG= + +# List files to be installed here +INSTALL_FILES= + +# Mark this directory as part of the Fortran API +HDF_FORTRAN=yes + +# Tell automake how to build examples using h5fc +# Additional dependencies for the examples are listed below +$(EXTRA_PROG): $(LIBHDF5) $(LIBH5F) $(LIBH5F_HL) +if BUILD_PARALLEL_CONDITIONAL + $(H5FC_PP) $(FCFLAGS) -o $@ $(srcdir)/$@.f90; +else + $(H5FC) $(FCFLAGS) -o $@ $(srcdir)/$@.f90; +endif + +# Tell automake how to install examples +EXAMPLEDIR=$(docdir)/hdf5/examples/hl/fortran + +# List dependencies for each example. Normally, automake would take +# care of this for us, but if we tell automake about the programs it +# will try to build them with the normal C compiler, not h5cc. This is +# an inelegant way of solving the problem. +# All programs share the same build rule and a dependency on the main hdf5 +# and fortran libraries above. + +include $(top_srcdir)/config/examples.am +include $(top_srcdir)/config/conclude.am diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in new file mode 100644 index 0000000000..73169ec913 --- /dev/null +++ b/hl/fortran/examples/Makefile.in @@ -0,0 +1,768 @@ +# Makefile.in generated by automake 1.9.5 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, +# 2003, 2004, 2005 Free Software Foundation, Inc. +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +# +# HDF5-Fortran Examples Makefile(.in) +# + +# We can't tell automake about example programs, because they need to be +# built using h5cc (or h5fc, etc.) instead of the standard compilers. +# This creates some extra work for us. +srcdir = @srcdir@ +top_srcdir = @top_srcdir@ +VPATH = @srcdir@ +pkgdatadir = $(datadir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkgincludedir = $(includedir)/@PACKAGE@ +top_builddir = ../../.. +am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd +INSTALL = @INSTALL@ +install_sh_DATA = $(install_sh) -c -m 644 +install_sh_PROGRAM = $(install_sh) -c +install_sh_SCRIPT = $(install_sh) -c +INSTALL_HEADER = $(INSTALL_DATA) +transform = $(program_transform_name) +NORMAL_INSTALL = : +PRE_INSTALL = : +POST_INSTALL = : +NORMAL_UNINSTALL = : +PRE_UNINSTALL = : +POST_UNINSTALL = : +build_triplet = @build@ +host_triplet = @host@ +DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/config/commence.am \ + $(top_srcdir)/config/conclude.am \ + $(top_srcdir)/config/examples.am +subdir = hl/fortran/examples +ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 +am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) +mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs +CONFIG_HEADER = $(top_builddir)/src/H5config.h +CONFIG_CLEAN_FILES = +SOURCES = +DIST_SOURCES = +DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) + +# Set the paths for AFS installs of autotools for Linux machines +# Ideally, these tools should never be needed during the build. +ACLOCAL = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/aclocal -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ +AMDEP_FALSE = @AMDEP_FALSE@ +AMDEP_TRUE = @AMDEP_TRUE@ +AMTAR = @AMTAR@ +AM_MAKEFLAGS = @AM_MAKEFLAGS@ +AR = @AR@ +AUTOCONF = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoconf +AUTOHEADER = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoheader +AUTOMAKE = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/automake +AWK = @AWK@ +BUILD_ALL_CONDITIONAL_FALSE = @BUILD_ALL_CONDITIONAL_FALSE@ +BUILD_ALL_CONDITIONAL_TRUE = @BUILD_ALL_CONDITIONAL_TRUE@ +BUILD_CXX_CONDITIONAL_FALSE = @BUILD_CXX_CONDITIONAL_FALSE@ +BUILD_CXX_CONDITIONAL_TRUE = @BUILD_CXX_CONDITIONAL_TRUE@ +BUILD_FORTRAN_CONDITIONAL_FALSE = @BUILD_FORTRAN_CONDITIONAL_FALSE@ +BUILD_FORTRAN_CONDITIONAL_TRUE = @BUILD_FORTRAN_CONDITIONAL_TRUE@ +BUILD_HDF5_HL_CONDITIONAL_FALSE = @BUILD_HDF5_HL_CONDITIONAL_FALSE@ +BUILD_HDF5_HL_CONDITIONAL_TRUE = @BUILD_HDF5_HL_CONDITIONAL_TRUE@ +BUILD_PABLO_CONDITIONAL_FALSE = @BUILD_PABLO_CONDITIONAL_FALSE@ +BUILD_PABLO_CONDITIONAL_TRUE = @BUILD_PABLO_CONDITIONAL_TRUE@ +BUILD_PARALLEL_CONDITIONAL_FALSE = @BUILD_PARALLEL_CONDITIONAL_FALSE@ +BUILD_PARALLEL_CONDITIONAL_TRUE = @BUILD_PARALLEL_CONDITIONAL_TRUE@ +BUILD_SHARED_ONLY_CONDITIONAL_FALSE = @BUILD_SHARED_ONLY_CONDITIONAL_FALSE@ +BUILD_SHARED_ONLY_CONDITIONAL_TRUE = @BUILD_SHARED_ONLY_CONDITIONAL_TRUE@ +BYTESEX = @BYTESEX@ +CC = @CC@ +CCDEPMODE = @CCDEPMODE@ +CC_VERSION = @CC_VERSION@ + +# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5, +# but which shouldn't be exported to h5cc for building other programs. +CFLAGS = @CFLAGS@ @H5_CFLAGS@ +CONFIG_DATE = @CONFIG_DATE@ +CONFIG_MODE = @CONFIG_MODE@ +CONFIG_USER = @CONFIG_USER@ +CPP = @CPP@ +CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@ +CXX = @CXX@ +CXXCPP = @CXXCPP@ +CXXDEPMODE = @CXXDEPMODE@ +CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@ +CXX_SHARED_CONDITIONAL_FALSE = @CXX_SHARED_CONDITIONAL_FALSE@ +CXX_SHARED_CONDITIONAL_TRUE = @CXX_SHARED_CONDITIONAL_TRUE@ +CYGPATH_W = @CYGPATH_W@ +DEBUG_PKG = @DEBUG_PKG@ +DEFS = @DEFS@ +DEPDIR = @DEPDIR@ +DYNAMIC_DIRS = @DYNAMIC_DIRS@ +ECHO = @ECHO@ +ECHO_C = @ECHO_C@ +ECHO_N = @ECHO_N@ +ECHO_T = @ECHO_T@ +EGREP = @EGREP@ +EXEEXT = @EXEEXT@ +F77 = @F77@ + +# Make sure that these variables are exported to the Makefiles +F9XMODEXT = @F9XMODEXT@ +F9XMODFLAG = @F9XMODFLAG@ +F9XSUFFIXFLAG = @F9XSUFFIXFLAG@ +FC = @FC@ +FCFLAGS = @FCFLAGS@ +FCLIBS = @FCLIBS@ +FFLAGS = @FFLAGS@ @H5_FFLAGS@ +FILTERS = @FILTERS@ +FORTRAN_SHARED_CONDITIONAL_FALSE = @FORTRAN_SHARED_CONDITIONAL_FALSE@ +FORTRAN_SHARED_CONDITIONAL_TRUE = @FORTRAN_SHARED_CONDITIONAL_TRUE@ +FSEARCH_DIRS = @FSEARCH_DIRS@ +H5_CFLAGS = @H5_CFLAGS@ +H5_CPPFLAGS = @H5_CPPFLAGS@ +H5_CXXFLAGS = @H5_CXXFLAGS@ +H5_FFLAGS = @H5_FFLAGS@ +H5_VERSION = @H5_VERSION@ +HADDR_T = @HADDR_T@ +HDF5_INTERFACES = @HDF5_INTERFACES@ +HID_T = @HID_T@ +HL = @HL@ +HL_FOR = @HL_FOR@ +HSIZET = @HSIZET@ +HSIZE_T = @HSIZE_T@ +HSSIZE_T = @HSSIZE_T@ +INSTALL_DATA = @INSTALL_DATA@ +INSTALL_PROGRAM = @INSTALL_PROGRAM@ +INSTALL_SCRIPT = @INSTALL_SCRIPT@ +INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ +INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ 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Most machines have this shell, and +# on at least one machine configure fails to detect its existence (janus). +# Also, when HDF5 is configured on one machine but run on another, +# configure's automatic SHELL detection may not work on the build machine. +SHELL = /bin/sh +SIZE_T = @SIZE_T@ +STATIC_SHARED = @STATIC_SHARED@ +STRIP = @STRIP@ +TESTPARALLEL = @TESTPARALLEL@ +TR = @TR@ +TRACE_API = @TRACE_API@ +USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@ +USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@ +USE_FILTER_NBIT = @USE_FILTER_NBIT@ +USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@ +USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@ +USE_FILTER_SZIP = @USE_FILTER_SZIP@ +VERSION = @VERSION@ +ac_ct_AR = @ac_ct_AR@ +ac_ct_CC = @ac_ct_CC@ +ac_ct_CXX = @ac_ct_CXX@ +ac_ct_F77 = @ac_ct_F77@ +ac_ct_FC = @ac_ct_FC@ +ac_ct_RANLIB = @ac_ct_RANLIB@ +ac_ct_STRIP = @ac_ct_STRIP@ +am__fastdepCC_FALSE = @am__fastdepCC_FALSE@ +am__fastdepCC_TRUE = @am__fastdepCC_TRUE@ +am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@ +am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@ +am__include = @am__include@ +am__leading_dot = @am__leading_dot@ +am__quote = @am__quote@ +am__tar = @am__tar@ +am__untar = @am__untar@ +bindir = @bindir@ +build = @build@ +build_alias = @build_alias@ +build_cpu = @build_cpu@ +build_os = @build_os@ +build_vendor = @build_vendor@ +datadir = @datadir@ +exec_prefix = @exec_prefix@ +host = @host@ +host_alias = @host_alias@ +host_cpu = @host_cpu@ +host_os = @host_os@ +host_vendor = @host_vendor@ + +# Install directories that automake doesn't know about +includedir = $(exec_prefix)/include +infodir = @infodir@ +install_sh = @install_sh@ +libdir = @libdir@ +libexecdir = @libexecdir@ +localstatedir = @localstatedir@ +mandir = @mandir@ +mkdir_p = @mkdir_p@ +oldincludedir = @oldincludedir@ +prefix = @prefix@ +program_transform_name = @program_transform_name@ +sbindir = @sbindir@ +sharedstatedir = @sharedstatedir@ +sysconfdir = @sysconfdir@ +target_alias = @target_alias@ + +# Shell commands used in Makefiles +RM = rm -f +CP = cp +TIME = time + +# Some machines need a command to run executables; this is that command +# so that our tests will run. +# We use RUNTESTS instead of RUNSERIAL directly because it may be that +# some tests need to be run with a different command. 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