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Refactor h5repackgentest to have more modular internals, for easier

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addition of new tests.
Update manifest and test script for new hdf5 external-storage .h5 files.
This commit is contained in:
Jacob Smith 2019-09-23 16:21:37 -05:00
parent 7d3e170763
commit aa797af31b
22 changed files with 278 additions and 154 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

20
MANIFEST
View File

@ -2552,16 +2552,26 @@
./tools/test/h5repack/testfiles/h5repack_early.h5
./tools/test/h5repack/testfiles/h5repack_ext.bin
./tools/test/h5repack/testfiles/h5repack_ext.h5
./tools/test/h5repack/testfiles/h5repack_f32le.h5
./tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_f32le_ex.h5
./tools/test/h5repack/testfiles/h5repack_fill.h5
./tools/test/h5repack/testfiles/h5repack_filters.h5
./tools/test/h5repack/testfiles/h5repack_fletcher.h5
./tools/test/h5repack/testfiles/h5repack_fsm_aggr_nopersist.h5
./tools/test/h5repack/testfiles/h5repack_fsm_aggr_persist.h5
./tools/test/h5repack/testfiles/h5repack_hlink.h5
./tools/test/h5repack/testfiles/h5repack_int32le_1d.h5
./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat
./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5
./tools/test/h5repack/testfiles/h5repack_int32le_2d.h5
./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5
./tools/test/h5repack/testfiles/h5repack_int32le_3d.h5
./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5
./tools/test/h5repack/testfiles/h5repack.info
./tools/test/h5repack/testfiles/h5repack_int32le.h5
./tools/test/h5repack/testfiles/h5repack_int32le_ex-0.dat
./tools/test/h5repack/testfiles/h5repack_int32le_ex.h5
./tools/test/h5repack/testfiles/h5repack_layout.h5
./tools/test/h5repack/testfiles/h5repack_layouto.h5
./tools/test/h5repack/testfiles/h5repack_layout2.h5
@ -2584,10 +2594,6 @@
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-4.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-5.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-6.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex-7.dat
./tools/test/h5repack/testfiles/h5repack_uint8be_ex.h5
./tools/test/h5repack/testfiles/ublock.bin
./tools/test/h5repack/testfiles/crtorder.tordergr.h5.ddl

24
tools/test/h5repack/h5repack.sh.in
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@ -115,8 +115,14 @@ $SRC_H5REPACK_TESTFILES/h5repack_fsm_aggr_persist.h5
$SRC_H5REPACK_TESTFILES/h5repack_none.h5
$SRC_H5REPACK_TESTFILES/h5repack_paged_nopersist.h5
$SRC_H5REPACK_TESTFILES/h5repack_paged_persist.h5
$SRC_H5REPACK_TESTFILES/h5repack_int32le.h5
$SRC_H5REPACK_TESTFILES/h5repack_int32le_ex.h5
$SRC_H5REPACK_TESTFILES/h5repack_f32le.h5
$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex.h5
$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d.h5
$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex.h5
$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d.h5
$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex.h5
$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d.h5
$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex.h5
$SRC_H5REPACK_TESTFILES/h5repack_uint8be.h5
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex.h5
$SRC_H5DIFF_TESTFILES/h5diff_attr1.h5
@ -164,7 +170,11 @@ $SRC_H5REPACK_TESTFILES/ublock.bin
$SRC_H5REPACK_TESTFILES/h5repack.info
$SRC_H5REPACK_TESTFILES/crtorder.tordergr.h5.ddl
$SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl
$SRC_H5REPACK_TESTFILES/h5repack_int32le_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-1.dat
$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl
$SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst
$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst
@ -173,10 +183,6 @@ $SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-1.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-2.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-3.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-4.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-5.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-6.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-7.dat
$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst
$SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl
$SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl
@ -647,7 +653,7 @@ DIFFFAIL()
# -----------------------------------------------------------------------------
VERIFY_EXTERNAL_CONSOLIDATION()
{
for name in int32le uint8be
for name in f32le int32le_1d int32le_2d int32le_3d uint8be
do
basename="h5repack_${name}"
base_ext="${basename}_ex"
@ -672,7 +678,7 @@ VERIFY_EXTERNAL_CONSOLIDATION()
DIFFTEST $repacked $canonical
DIFFTEST $repacked $external
# invalidate external file by moving its data file; verify
# invalidate external file by moving its first data file; verify
( cd $TESTDIR
mv $ex_dat $ex_dat_mv
)

387
tools/test/h5repack/h5repackgentest.c
View File

@ -32,8 +32,11 @@
#include "H5private.h"
#define MAX_NAME_SIZE 256
#define FILE_INT32LE "h5repack_int32le"
#define FILE_INT32LE_1 "h5repack_int32le_1d"
#define FILE_INT32LE_2 "h5repack_int32le_2d"
#define FILE_INT32LE_3 "h5repack_int32le_3d"
#define FILE_UINT8BE "h5repack_uint8be"
#define FILE_F32LE "h5repack_f32le"
#define H5REPACKGENTEST_OOPS ret_value = -1; goto done;
@ -45,37 +48,43 @@
if ((space) != H5I_INVALID_HID) { (void)H5Sclose((space)); } \
}
struct external_def {
hsize_t type_size;
unsigned n_elts_per_file;
unsigned n_elts_total;
};
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Helper function to create and write a dataset to file.
* Returns 0 on success, -1 on failure.
*/
static int
make_dataset(
hid_t file,
__make_dataset(
hid_t file_id,
const char *dset_name,
hid_t mem_type_id,
hid_t space,
hid_t dcpl,
hid_t space_id,
hid_t dcpl_id,
void *wdata)
{
hid_t dset = H5I_INVALID_HID;
hid_t dset_id = H5I_INVALID_HID;
int ret_value = 0;
dset = H5Dcreate2(
file,
"dset",
dset_id = H5Dcreate2(
file_id,
dset_name,
mem_type_id,
space,
space_id,
H5P_DEFAULT,
dcpl,
dcpl_id,
H5P_DEFAULT);
if (dset == H5I_INVALID_HID) {
if (dset_id == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
if (H5Dwrite(
dset,
dset_id,
mem_type_id,
H5S_ALL,
H5S_ALL,
@ -87,47 +96,194 @@ make_dataset(
}
done:
if (dset != H5I_INVALID_HID) { (void)H5Dclose(dset); }
if (dset_id != H5I_INVALID_HID) { (void)H5Dclose(dset_id); }
return ret_value;
} /* end make_dataset() */
} /* end __make_dataset() */
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Helper function to populate the DCPL external storage list.
* Creates external files for the DCPL, with each file name following the
* convention "<filename>_ex-<num>.dat". Will append `n_external_files` to
* the filename list, with each file having space for `n_elts` items of the
* type (of size `elt_size`). The numeric inputs are not sanity-checked.
* Returns 0 on success, -1 on failure.
*/
static int
set_dcpl_external_list(
__set_dcpl_external_list(
hid_t dcpl,
const char *filename,
hsize_t n_external_files,
hsize_t n_elts,
hsize_t elt_size)
unsigned n_elts_per_file,
unsigned n_elts_total,
hsize_t elt_size)
{
hsize_t i = 0;
char name[MAX_NAME_SIZE];
char name[MAX_NAME_SIZE];
unsigned n_external_files = 0;
unsigned i = 0;
if (NULL == filename || '\0' == *filename) {
return -1;
}
n_external_files = n_elts_total / n_elts_per_file;
if (n_elts_total != (n_external_files * n_elts_per_file)) {
return -1;
}
for (i = 0; i < n_external_files; i++) {
snprintf(name, MAX_NAME_SIZE, "%s_ex-%llu.dat", filename, i);
if (H5Pset_external(dcpl, name, 0, n_elts * elt_size) < 0) {
if (snprintf(name, MAX_NAME_SIZE, "%s_ex-%u.dat", filename, i) >= MAX_NAME_SIZE) {
return -1;
}
if (H5Pset_external(dcpl, name, 0, n_elts_per_file * elt_size) < 0) {
return -1;
}
}
return 0;
} /* end set_dcpl_external_list() */
} /* end __set_dcpl_external_list() */
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Generalized utility function to write a file with the specified data and
* dataset configuration. If `ext` is provided, will attempt to use external
* storage.
* Returns 0 on success, -1 on failure.
*/
static int
generate_int32le(hbool_t external)
__make_file(
const char *basename,
struct external_def *ext,
hid_t type_id,
hsize_t rank,
hsize_t *dims,
void *wdata)
{
char filename[MAX_NAME_SIZE];
hid_t file = H5I_INVALID_HID;
hid_t dcpl = H5P_DEFAULT;
hid_t space = H5I_INVALID_HID;
hsize_t dims[] = {8, 8, 8};
int32_t wdata[512]; /* 8^3, from dims */
hid_t file_id = H5I_INVALID_HID;
hid_t dcpl_id = H5P_DEFAULT;
hid_t space_id = H5I_INVALID_HID;
int ret_value = 0;
if (snprintf(filename,
MAX_NAME_SIZE,
"%s%s.h5",
basename,
(NULL != ext) ? "_ex" : "")
>= MAX_NAME_SIZE)
{
H5REPACKGENTEST_OOPS;
}
if (NULL != ext) {
dcpl_id = H5Pcreate(H5P_DATASET_CREATE);
if (dcpl_id == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
if (__set_dcpl_external_list(
dcpl_id,
basename,
ext->n_elts_per_file,
ext->n_elts_total,
ext->type_size)
< 0)
{
H5REPACKGENTEST_OOPS;
}
}
space_id = H5Screate_simple(rank, dims, NULL);
if (space_id == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (file_id == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
if (__make_dataset(
file_id,
"dset",
type_id,
space_id,
dcpl_id,
wdata)
< 0)
{
H5REPACKGENTEST_OOPS;
}
done:
H5REPACKGENTEST_COMMON_CLEANUP(dcpl_id, file_id, space_id);
return ret_value;
} /* end __make_file() */
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Returns 0 on success, -1 on failure.
*/
static int
generate_int32le_1d(hbool_t external)
{
int32_t wdata[12];
hsize_t dims[] = {12};
struct external_def *def_ptr = NULL;
struct external_def def = { (hsize_t)sizeof(int32_t), 6, 12 };
int32_t n = 0;
int ret_value = 0;
/* Generate values
*/
for (n = 0; n < 12; n++) {
wdata[n] = n-6;
}
def_ptr = (TRUE == external) ? (&def) : NULL;
if (__make_file(FILE_INT32LE_1, def_ptr, H5T_STD_I32LE, 1, dims, wdata) < 0) {
ret_value = -1;
}
return ret_value;
} /* end generate_int32le_1d() */
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Returns 0 on success, -1 on failure.
*/
static int
generate_int32le_2d(hbool_t external)
{
int32_t wdata[64];
hsize_t dims[] = {8, 8};
struct external_def *def_ptr = NULL;
struct external_def def = { (hsize_t)sizeof(int32_t), 64, 64 };
int32_t n = 0;
int ret_value = 0;
/* Generate values
*/
for (n = 0; n < 64; n++) {
wdata[n] = n-32;
}
def_ptr = (TRUE == external) ? (&def) : NULL;
if (__make_file(FILE_INT32LE_2, def_ptr, H5T_STD_I32LE, 2, dims, wdata) < 0) {
ret_value = -1;
}
return ret_value;
} /* end generate_int32le_2d() */
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Returns 0 on success, -1 on failure.
*/
static int
generate_int32le_3d(hbool_t external)
{
hsize_t dims[] = {8, 8, 8};
int32_t wdata[512]; /* 8^3, from dims */
struct external_def *def_ptr = NULL;
struct external_def def = { (hsize_t)sizeof(int32_t), 512, 512 };
int32_t n = 0;
int i = 0;
int j = 0;
@ -136,160 +292,115 @@ generate_int32le(hbool_t external)
/* generate values, alternating positive and negative
*/
for (i=0, n=0; i < 8; i++) {
for (j=0; j < 8; j++) {
for (k=0; k < 8; k++, n++) {
for (i=0, n=0; i < dims[0]; i++) {
for (j=0; j < dims[1]; j++) {
for (k=0; k < dims[2]; k++, n++) {
wdata[n] = (k + j*512 + i*4096) * ((n&1) ? (-1) : (1));
}
}
}
snprintf(filename,
MAX_NAME_SIZE,
"%s%s.h5",
FILE_INT32LE,
(external) ? "_ex" : "");
if (external) {
dcpl = H5Pcreate(H5P_DATASET_CREATE);
if (dcpl == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
if (set_dcpl_external_list(
dcpl,
FILE_INT32LE,
1,
512,
sizeof(int32_t))
< 0)
{
H5REPACKGENTEST_OOPS;
}
def_ptr = (TRUE == external) ? (&def) : NULL;
if (__make_file(FILE_INT32LE_3, def_ptr, H5T_STD_I32LE, 3, dims, wdata) < 0) {
ret_value = -1;
}
space = H5Screate_simple(3, dims, NULL);
if (space == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (file == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
if (make_dataset(
file,
"dset",
H5T_STD_I32LE,
space,
dcpl,
wdata)
< 0)
{
H5REPACKGENTEST_OOPS;
}
done:
H5REPACKGENTEST_COMMON_CLEANUP(dcpl, file, space);
return ret_value;
} /* end generate_int32le() */
} /* end generate_int32le_3d() */
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Returns 0 on success, -1 on failure.
*/
static int
generate_uint8be(hbool_t external)
{
char filename[MAX_NAME_SIZE];
hid_t file = H5I_INVALID_HID;
hid_t dcpl = H5P_DEFAULT;
hid_t space = H5I_INVALID_HID;
hsize_t dims[] = {8, 8, 8};
uint8_t wdata[512]; /* 8^3, from dims */
hsize_t dims[] = {4, 8, 8};
uint8_t wdata[256]; /* 4*8*8, from dims */
struct external_def *def_ptr = NULL;
struct external_def def = { (hsize_t)sizeof(uint8_t), 64, 256 };
uint8_t n = 0;
int i = 0;
int j = 0;
int k = 0;
int ret_value = 0;
/* Generate values, alternating positive and negative
* The latter half of the dataset is "overflow garbage" (TODO?)
/* Generate values, ping-pong from ends of range
*/
for (i=0, n=0; i < 8; i++) {
for (j=0; j < 8; j++) {
for (k=0; k < 8; k++, n++) {
for (i=0, n=0; i < dims[0]; i++) {
for (j=0; j < dims[1]; j++) {
for (k=0; k < dims[2]; k++, n++) {
wdata[n] = n * ((n&1) ? (-1) : (1));
}
}
}
snprintf(filename,
MAX_NAME_SIZE,
"%s%s.h5",
FILE_UINT8BE,
(external) ? "_ex" : "");
if (external) {
dcpl = H5Pcreate(H5P_DATASET_CREATE);
if (dcpl == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
if (set_dcpl_external_list(
dcpl,
FILE_UINT8BE,
8,
64,
sizeof(uint8_t))
< 0)
{
H5REPACKGENTEST_OOPS;
}
def_ptr = (TRUE == external) ? (&def) : NULL;
if (__make_file(FILE_UINT8BE, def_ptr, H5T_STD_U8BE, 3, dims, wdata) < 0) {
ret_value = -1;
}
space = H5Screate_simple(3, dims, NULL);
if (space == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
file = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
if (file == H5I_INVALID_HID) {
H5REPACKGENTEST_OOPS;
}
if (make_dataset(
file,
"dset",
H5T_STD_U8BE,
space,
dcpl,
wdata)
< 0)
{
H5REPACKGENTEST_OOPS;
}
done:
H5REPACKGENTEST_COMMON_CLEANUP(dcpl, file, space);
return ret_value;
} /* end generate_uint8be() */
/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Returns 0 on success, -1 on failure.
*/
static int
generate_f32le(hbool_t external)
{
hsize_t dims[] = {12, 6};
float wdata[72]; /* 12*6, from dims */
struct external_def *def_ptr = NULL;
struct external_def def = {
(hsize_t)sizeof(float),
72,
72
};
float n = 0;
int i = 0;
int j = 0;
int k = 0;
int ret_value = 0;
/* Generate values */
for (i=0, k=0, n=0; i < dims[0]; i++) {
for (j=0; j < dims[1]; j++, k++, n++) {
wdata[k] = n * 801.1 * ((k % 5 == 1) ? (-1) : (1));
}
}
def_ptr = (TRUE == external) ? (&def) : NULL;
if (__make_file(FILE_F32LE, def_ptr, H5T_IEEE_F32LE, 2, dims, wdata) < 0) {
ret_value = -1;
}
return ret_value;
} /* end generate_f32le() */
/* ----------------------------------------------------------------------------
* Create files.
* Return 0 on success, nonzero on failure.
*/
int
main(void)
{
int i = 0; /* loop variable */
int i = 0;
int ret_value = 0;
for (i=0; i < 2; i++) {
hbool_t external = (i&1) ? TRUE : FALSE;
if (ret_value == 0) { ret_value -= generate_int32le(external); }
if (ret_value == 0) { ret_value -= generate_int32le_1d(external); }
if (ret_value == 0) { ret_value -= generate_int32le_2d(external); }
if (ret_value == 0) { ret_value -= generate_int32le_3d(external); }
if (ret_value == 0) { ret_value -= generate_uint8be(external); }
if (ret_value == 0) { ret_value -= generate_f32le(external); }
} /* end for external data storage or not */
if (ret_value != 0) {
/* TODO: print warning message? */
HDprintf("A problem occurred!\n");
}
return ret_value;

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