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INSTALL.ascired -> INSTALL_TFLOPS INSTALL.ibm.sp.parallel -> bin/config_para_ibm_sp.sh INSTALL_parallel.ascired -> bin/config_para_tflops.sh
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Albert Cheng
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107
INSTALL.ascired
107
INSTALL.ascired
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FOR THE INTEL TFLOPS MACHINE:
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Below are the step-by-step procedures for building, testing, and
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installing both the sequential and parallel versions of the HDF5 library.
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---------------
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Sequential HDF5:
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---------------
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The setup process for building the sequential HDF5 library for the
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ASCI Red machine is done by a coordination of events from sasn100 and
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janus. Though janus can do compiling, it is better to build it
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from sasn100 which has more complete building tools and runs faster.
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It is also anti-social to tie up janus with compiling. The HDF5 building
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requires the use of janus because one of steps is to execute a program
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to find out the run-time characteristics of the TFLOPS machine.
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Assuming you have already unpacked the HDF5 tar-file into the
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directory <hdf5>, follow the steps below:
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FROM SASN100,
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1) cd <hdf5>
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2) ./configure tflop
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3) make H5detect
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FROM JANUS,
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4) cd <hdf5>
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5) make H5Tinit.c
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FROM SASN100,
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6) make
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When everything is finished compiling and linking,
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you can run the tests by
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FROM JANUS,
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7.1) Due to a bug, you must first remove the following line from
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the file test/Makefile before the next step.
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RUNTEST=$(LT_RUN)
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7.2) make check
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Once satisfied with the test results, you can install
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the software by
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FROM SASN100,
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8) make install
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---------------
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Parallel HDF5:
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---------------
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The setup process for building the parallel version of the HDF5 library for the
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ASCI Red machine is very similar to the sequential version. Since TFLOPS
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does not support MPIO, we have prepared a shell-script file that configures
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with the appropriate MPI library.
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Assuming you have already unpacked the HDF5 tar-file into the
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directory <hdf5>, follow the steps below:
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FROM SASN100,
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1) cd <hdf5>
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2) sh INSTALL_parallel.ascired /* this is different from the sequential version */
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3) make H5detect
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FROM JANUS,
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4) cd <hdf5>
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5) make H5Tinit.c
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FROM SASN100,
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6) make
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When everything is finished compiling and linking,
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FROM JANUS,
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7.1) Due to a bug, you must first remove the following line from
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the file test/Makefile before the next step.
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RUNTEST=$(LT_RUN)
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7.2) make check
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Once satisfied with the parallel test results, as long as you
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have the correct permission,
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FROM SASN100,
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8) make install
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@ -1,88 +0,0 @@
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# How to create a parallel version of HDF5 on an IBM SP system
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# that uses MPI and MPI-IO.
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# Unfortunately, the configure/make process to create the parallel version of
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# HDF5 has not yet been automated to the same extent that the sequential
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# version has.
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# Read the INSTALL file to understand the configure/make process for the
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# sequential (i.e., uniprocess) version of HDF5.
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# The process for creating the parallel version of HDF5 using MPI-IO
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# is similar, but first you will have to set up some environment variables
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# with values specific to your local installation.
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# The relevant variables are shown below, with values that work for LLNL's
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# ASCI baby blue pacific SP as of the writing of these instructions (980210).
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# In addition to the environment variables, you _might_ also have to
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# create a new file in the config directory.
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# You will need to create this file only if the execution of the ./configure
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# program aborts with an error after printing the message
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# "checking whether byte ordering is bigendian..."
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#
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# If this is the case, create a new file in the config directory
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# whose name is of the form architecture-vendor-OSversion
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# (e.g., for baby blue pacific, this file is named powerpc-ibm-aix4.2.1.0)
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# and which contains the line
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# ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
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# if the target architecture is bigendian, or
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# ac_cv_c_bigendian=${ac_cv_c_bigendian='no'}
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# otherwise.
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# Running the program ./bin/config.guess will print out the name
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# of the new file you must create.
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# Don't try to make a parallel version of HDF5 from the same hdf5 root
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# directory where you made a sequential version of HDF5 -- start with
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# a fresh copy.
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# Here are the flags you must set before running the ./configure program
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# to create the parallel version of HDF5.
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# (We use csh here, but of course you can adapt to whatever shell you like.)
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# compile for MPI jobs
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setenv CC "/usr/local/mpich-1.1.2+romio_lgfiles/bin/mpicc"
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#
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# next 4 for IBM mpi
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#
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#setenv CC /usr/lpp/ppe.poe/bin/mpcc_r
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#
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# for both
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#
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setenv MP_PROCS 1
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# These compiler flags work on ASCI baby blue pacific (IBM SP),
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# using IBM's MPI and Argonne's MPI-IO (ROMIO):
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# -DHAVE_FUNCTION compiler accepts __FUNCTION__ notation
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# -I/usr/local/mpio/include/ibm using ROMIO's MPI-IO header files
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#
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# The following flags are only needed when compiling/linking a user program
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# for execution.
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# -bI:/usr/include/piofs/piofs.exp this MPI-IO uses PIOFS file system
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# -L/usr /local/mpio/lib/ibm -lmpio link to this MPI-IO lib
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#
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#setenv CFLAGS "-D_LARGE_FILES $CFLAGS"
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# The configure/make process needs to be able to run some programs,
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# need to specify a processor pool.
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# Also, don't prepend the process id in the output of the programs
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# run by config/make.
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setenv MP_RMPOOL 0
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setenv MP_LABELIO no
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# Once these variables are set to the proper values for your installation,
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# you can run the configure program (i.e., ./configure)
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# to set up the Makefiles, etc.
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# After configuring, run the make as described in the INSTALL file.
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# Once the configuration is complete, you can set any of your
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# environment variables to whatever you like.
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# the files in the config directory, such as
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# config/powerpc-ibm-aix4.2.1.0
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# config/powerpc-ibm-aix4.x
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# config/powerpc-ibm-aix4.3.2.0
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# sometimes will need some help depending on subtlties of the installation
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# When compiling and linking your application, don't forget to compile with
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# mpcc and link to the MPI-IO library and the parallel version of the HDF5
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# library (that was created and installed with the configure/make process).
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@ -1,58 +0,0 @@
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#! /bin/sh
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# How to create a parallel version of HDF5 on the Intel Asci Red System
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# that uses MPI and MPI-IO.
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# Read the INSTALL.ascired file to understand the configure/make process
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# for the sequential (i.e., uniprocessor) version of HDF5.
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# The process for creating the parallel version of HDF5 using MPI-IO
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# is similar, but first you will have to set up some environment variables
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# with values specific to your local installation.
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# The relevant variables are shown below, with values that work for Sandia'a
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# ASCI Red Tflops machine as of the writing of these instructions (980421).
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# Don't try to make a parallel version of HDF5 from the same hdf5 root
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# directory where you made a sequential version of HDF5 -- start with
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# a fresh copy.
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# Here are the flags you must set before running the ./configure program
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# to create the parallel version of HDF5.
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# (We use sh here, but of course you can adapt to whatever shell you like.)
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# compile for MPI jobs
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#CC=cicc
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# The following flags are only needed when compiling/linking a user program
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# for execution.
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#
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# Using the MPICH libary by Daniel Sands.
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# It contains both MPI-1 and MPI-IO functions.
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ROMIO="${HOME}/MPIO/mpich"
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if [ ! -d $ROMIO ]
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then
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echo "ROMIO directory ($ROMIO) not found"
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echo "Aborted"
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exit 1
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fi
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mpi1_inc=""
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mpi1_lib=""
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mpio_inc="-I$ROMIO/include"
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mpio_lib="-L$ROMIO/lib"
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MPI_INC="$mpi1_inc $mpio_inc"
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MPI_LIB="$mpi1_lib $mpio_lib"
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# Once these variables are set to the proper values for your installation,
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# you can run the configure program (i.e., ./configure tflop --enable-parallel=mpio)
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# to set up the Makefiles, etc.
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# After configuring, run the make as described in the INSTALL file.
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# When compiling and linking your application, don't forget to compile with
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# cicc and link to the MPI-IO library and the parallel version of the HDF5
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# library (that was created and installed with the configure/make process).
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CPPFLAGS=$MPI_INC \
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LDFLAGS=$MPI_LIB \
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LIBS="-lmpich" \
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./configure --enable-parallel tflop $@
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6
MANIFEST
6
MANIFEST
@ -7,11 +7,9 @@
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./COPYING
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./INSTALL
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./INSTALL.ascired
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./INSTALL.ibm.sp.parallel
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./INSTALL_MAINT
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./INSTALL_TFLOPS
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./INSTALL_parallel
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./INSTALL_parallel.ascired
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./INSTALL_Windows.txt
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./MANIFEST
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./Makefile.dist
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@ -28,6 +26,8 @@
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./bin/checkposix _DO_NOT_DISTRIBUTE_
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./bin/config.guess
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./bin/config.sub
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./bin/config_para_ibm_sp.sh
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./bin/config_para_tflops.sh
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./bin/debug-ohdr _DO_NOT_DISTRIBUTE_
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./bin/distdep
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./bin/errors _DO_NOT_DISTRIBUTE_
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