Fix assertion failure during file close on error (#3387)

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jhendersonHDF 2023-08-18 15:59:25 -05:00 committed by GitHub
parent 7025c5f109
commit 98b8fa7469
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5 changed files with 67 additions and 1 deletions

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@ -283,6 +283,17 @@ Bug Fixes since HDF5-1.14.0 release
===================================
Library
-------
- Fixed an assertion failure in Parallel HDF5 when a file can't be created
due to an invalid library version bounds setting
An assertion failure could occur in H5MF_settle_raw_data_fsm when a file
can't be created with Parallel HDF5 due to specifying the use of a paged,
persistent file free space manager
(H5Pset_file_space_strategy(..., H5F_FSPACE_STRATEGY_PAGE, 1, ...)) with
an invalid library version bounds combination
(H5Pset_libver_bounds(..., H5F_LIBVER_EARLIEST, H5F_LIBVER_V18)). This
has now been fixed.
- Fixed bugs in selection I/O
Previously, the library could fail in some cases when performing selection

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@ -416,7 +416,7 @@ H5C_prep_for_file_close(H5F_t *f)
#ifdef H5_HAVE_PARALLEL
if ((H5F_INTENT(f) & H5F_ACC_RDWR) && !image_generated && cache_ptr->aux_ptr != NULL &&
f->shared->fs_persist) {
f->shared->sblock && f->shared->fs_persist) {
/* If persistent free space managers are enabled, flushing the
* metadata cache may result in the deletion, insertion, and/or
* dirtying of entries.

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@ -1009,3 +1009,54 @@ test_delete(void)
VRFY((SUCCEED == ret), "H5Pclose");
} /* end test_delete() */
/*
* Tests for an assertion failure during file close that used
* to occur when the library fails to create a file in parallel
* due to an invalid library version bounds setting
*/
void
test_invalid_libver_bounds_file_close_assert(void)
{
const char *filename = NULL;
MPI_Comm comm = MPI_COMM_WORLD;
MPI_Info info = MPI_INFO_NULL;
herr_t ret;
hid_t fid = H5I_INVALID_HID;
hid_t fapl_id = H5I_INVALID_HID;
hid_t fcpl_id = H5I_INVALID_HID;
filename = (const char *)GetTestParameters();
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
/* setup file access plist */
fapl_id = H5Pcreate(H5P_FILE_ACCESS);
VRFY((fapl_id != H5I_INVALID_HID), "H5Pcreate");
ret = H5Pset_fapl_mpio(fapl_id, comm, info);
VRFY((SUCCEED == ret), "H5Pset_fapl_mpio");
ret = H5Pset_libver_bounds(fapl_id, H5F_LIBVER_EARLIEST, H5F_LIBVER_V18);
VRFY((SUCCEED == ret), "H5Pset_libver_bounds");
/* setup file creation plist */
fcpl_id = H5Pcreate(H5P_FILE_CREATE);
VRFY((fcpl_id != H5I_INVALID_HID), "H5Pcreate");
ret = H5Pset_file_space_strategy(fcpl_id, H5F_FSPACE_STRATEGY_PAGE, TRUE, 1);
VRFY((SUCCEED == ret), "H5Pset_file_space_strategy");
/* create the file */
H5E_BEGIN_TRY
{
fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl_id, fapl_id);
}
H5E_END_TRY
VRFY((fid == H5I_INVALID_HID), "H5Fcreate");
ret = H5Pclose(fapl_id);
VRFY((SUCCEED == ret), "H5Pclose");
ret = H5Pclose(fcpl_id);
VRFY((SUCCEED == ret), "H5Pclose");
}

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@ -359,6 +359,9 @@ main(int argc, char **argv)
AddTest("delete", test_delete, NULL, "MPI-IO VFD file delete", PARATESTFILE);
AddTest("invlibverassert", test_invalid_libver_bounds_file_close_assert, NULL,
"Invalid libver bounds assertion failure", PARATESTFILE);
AddTest("idsetw", dataset_writeInd, NULL, "dataset independent write", PARATESTFILE);
AddTest("idsetr", dataset_readInd, NULL, "dataset independent read", PARATESTFILE);

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@ -232,6 +232,7 @@ void external_links(void);
void zero_dim_dset(void);
void test_file_properties(void);
void test_delete(void);
void test_invalid_libver_bounds_file_close_assert(void);
void multiple_dset_write(void);
void multiple_group_write(void);
void multiple_group_read(void);