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[svn-r5237] Purpose:
Updated the installation instruction for the Tflops machine.
Moved the parallel HDF5 building instructions to the front
and putting in a NOTE that the sequential version is not supported
any more because it has little practical value to build sequential
applications for the Tflops machine.
This commit is contained in:
Albert Cheng
parent
24edaaf9f0
commit
95d86b38c5
@ -1,19 +1,101 @@
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FOR THE INTEL TFLOPS MACHINE:
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Below are the step-by-step procedures for building, testing, and
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installing both the sequential and parallel versions of the HDF5 library.
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installing the parallel and sequential versions of the HDF5 library.
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-----------------
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Software locations
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------------------
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The zlib compression library is installed in /usr/community/hdf5/ZLIB.
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The mpich library, including mpi-io support, is in
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/usr/community/mpich/mpich-1.2.1.
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The latest version is zlib v1.1.3.
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The mpich library, including mpi-io support, is in /usr/community/mpich/.
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The latest version used is mpich-1.2.3.
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---------------
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Parallel HDF5:
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---------------
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The setup process for building the parallel version of the HDF5 library for the
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ASCI Red machine is very similar to the sequential version. Since TFLOPS
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does not support MPIO, we have prepared a shell-script file that configures
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with the appropriate MPI library.
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Assuming you have already unpacked the HDF5 tar-file into the
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directory <hdf5>, follow the steps below:
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FROM SASN100,
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1) cd <hdf5>
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2) CC=/usr/community/mpich/mpich-1.2.3/bin/mpicc ./configure --host=i386-intel-osf1
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You may safely ignore the WARNING message,
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configure: WARNING: If you wanted to set the --build type, don't use --host.
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If a cross compiler is detected then cross compile mode will be used.
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You may add the option "--host=i386-intel-osf1" to get rid of the WARNING.
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Due to a bug, you need to patch up two Makefile, src/Makefile and
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test/Makefile, before the next step. You can use the following
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shell commands.
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# Patch up various Makefile's.
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# patch up src/Makefile
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echo "patching src/Makefile"
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ed - src/Makefile <<'EOF'
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/^LT_RUN=.*/s//LT_RUN=$(RUNTEST)/
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w
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q
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EOF
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# patch up test/Makefile
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echo "patching test/Makefile"
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ed - test/Makefile <<'EOF'
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/^RUNTEST=$(LT_RUN)/s/^/#/
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w
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q
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EOF
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3) make H5detect
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FROM JANUS,
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4) cd <hdf5>
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5) make H5Tinit.c
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FROM SASN100,
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6) make
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When everything is finished compiling and linking,
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FROM JANUS,
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7) make check
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Sometimes the "make check" fails in the sub-directories of test
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or tools with a message as "print not found". This is due to the
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"make" of Janus thinking some binary code needs to be recompiled.
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The easiest way to fix it is
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FROM SASN100
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cd <hdf5>/test # or cd <hdf5>/tools
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make clean; make # re-make all binary
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Once satisfied with the parallel test results, as long as you
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have the correct permission,
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FROM SASN100,
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8) make install
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---------------
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Sequential HDF5:
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---------------
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(**NOTE** We have stopped testing sequential HDF5 for the Tflops machine
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since it has little practical value to build sequential applications for
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the Tflops machine. The instruction below are kept more for historical
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purpose.)
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The setup process for building the sequential HDF5 library for the
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ASCI Red machine is done by a coordination of events from sasn100 and
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@ -93,81 +175,3 @@ FROM SASN100,
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8) make install
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---------------
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Parallel HDF5:
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---------------
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The setup process for building the parallel version of the HDF5 library for the
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ASCI Red machine is very similar to the sequential version. Since TFLOPS
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does not support MPIO, we have prepared a shell-script file that configures
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with the appropriate MPI library.
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Assuming you have already unpacked the HDF5 tar-file into the
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directory <hdf5>, follow the steps below:
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FROM SASN100,
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1) cd <hdf5>
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2) CC=/usr/community/mpich/mpich-1.2.1/bin/mpicc ./configure --host=i386-intel-osf1
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You may safely ignore the WARNING message,
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configure: WARNING: If you wanted to set the --build type, don't use --host.
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If a cross compiler is detected then cross compile mode will be used.
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You may add the option "--host=i386-intel-osf1" to get rid of the WARNING.
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Due to a bug, you need to patch up two Makefile, src/Makefile and
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test/Makefile, before the next step. You can use the following
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shell commands.
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# Patch up various Makefile's.
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# patch up src/Makefile
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echo "patching src/Makefile"
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ed - src/Makefile <<'EOF'
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/^LT_RUN=.*/s//LT_RUN=$(RUNTEST)/
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w
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q
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EOF
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# patch up test/Makefile
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echo "patching test/Makefile"
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ed - test/Makefile <<'EOF'
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/^RUNTEST=$(LT_RUN)/s/^/#/
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w
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q
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EOF
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3) make H5detect
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FROM JANUS,
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4) cd <hdf5>
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5) make H5Tinit.c
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FROM SASN100,
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6) make
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When everything is finished compiling and linking,
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FROM JANUS,
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7) make check
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Sometimes the "make check" fails in the sub-directories of test
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or tools with a message as "print not found". This is due to the
|
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"make" of Janus thinking some binary code needs to be recompiled.
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The easiest way to fix it is
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FROM SASN100
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cd <hdf5>/test # or cd <hdf5>/tools
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make clean; make # re-make all binary
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|
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|
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Once satisfied with the parallel test results, as long as you
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have the correct permission,
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FROM SASN100,
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8) make install
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