[svn-r514] Changes since 19980715

----------------------

./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fsplit.c
	Changed the allocation size request from `size_t' to `hsize_t'
	because it was overflowing for the `big' test.

./src/H5detect.c
	If `long double' and `double' are the same size then we define
	H5T_NATIVE_LDOUBLE to be the same as H5T_NATIVE_DOUBLE.
	Similarly for `long' vs. `long long' and `unsigned long' vs.
	`unsigned long long'.

./test/Makefile.in
	Added `big' to the list of tests to normally run.

./test/big.c
	Added a check to see if the file system supports holes and if
	it doesn't then the test is skipped.

./RELEASE
	Added a couple minor details details about API tracing and
	symbolic links.

./src/H5public.h
	Added comments about the use of hbool_t. Fixed a comment
	spelling error.

./test/testhdf5.h
	Changed the way the version number is printed.  The old method
	was `hdf5-1.2.3d' and the new method is `hdf5 version 1.2
	release 3'

./tools/h5ls.c
	Only prints the max dimension if it differs from the current
	dimension or if verbose mode is enabled.  Added switches `-?',
	`-h', and `--help' to print a usage message.  Added switches
	`-v' and `--verbose' to generate more verbose output.  Added
	switches `-V' and `--version' to print the version number and
	exit.  The version number is printed like: This is h5ls
	version 1.0 release 24'

./bin/h5vers	[NEW]
	This script prints, sets, and/or increments the hdf5 version
	number. It can be run from the top directory or any of the
	child directories like src, tools, test, etc. Some examples:

	  $ h5vers				# Display current version
	  1.0.24

	  $ h5vers -v
	  version 1.0 release 24		# Display current version.

	  $ h5vers -s 5.2.8			# Set version and display
	  5.2.8

	  $ h5vers -s 2.1
	  2.1.0

	  $ h5vers -s hdf5-1.0.24a.tar.bz2
	  1.0.24

	  $ h5vers -s 'version 2.0 release 8'
	  2.0.8

	  $ h5vers -s 'junk 22 junk 33 more junk 66 and 99 junk'
	  33.66.99

	  $ h5vers -i major			# Increment from 1.0.24
	  2.0.0

	  $ h5vers -i minor			# Increment from 1.0.24
	  1.1.0

	  $ h5vers -i release			# Increment from 1.0.24
	  1.0.25

	  $ h5vers ~/hdf5/src/H5public.h	# Use an alternate file
	  1.0.24

./bin/checkapi		[NEW]
	Run from the src directory with arguments H5[A-Z]*.c and it
	will print the locations of each place where an API function
	was called from within the library.  Use it as the compile or
	grep command under Emacs and you can C-x ` through the list.

./bin/debug-ohdr	[NEW]
	Keeps track of H5O_open() and H5O_close() debugging messages
	and lists the file addresses of the object headers that are
	opened but never closed.  You must enable the `o' debugging at
	configuration time and pipe stderr into this script.

./bin/errors
	Added a note to indicate that this script no longer works
	because of changes in the HRETURN_ERROR() and HGOTO_ERROR()
	macros.

./bin/iostats		[NEW]
	Watches output from the Linux strace program and accumulates
	statistics about low-level access to an hdf5 file.  The output
	is a list of 2d data points which can be plotted by gnuplot to
	show file seeking behavior.

./MANIFEST
	Added new files.
This commit is contained in:
Robb Matzke 1998-07-17 14:03:43 -05:00
parent 6bea093682
commit 79d65106ab
13 changed files with 413 additions and 57 deletions

View File

@ -11,12 +11,16 @@
./README
./RELEASE
./acconfig.h
./bin/checkapi
./bin/checkposix
./bin/config.guess
./bin/config.sub
./bin/debug-ohdr
./bin/distdep
./bin/errors
./bin/h5vers
./bin/install-sh
./bin/iostats
./bin/release
./bin/trace
./bin/versinc

2
README
View File

@ -1,4 +1,4 @@
This is hdf5-1.0.23a released on 1998-06-15 18:31 UTC
This is hdf5-1.0.24a released on 1998-06-17 14:14 UTC
Please refer to the INSTALL file for installation instructions.
------------------------------------------------------------------------------

16
RELEASE
View File

@ -1,5 +1,5 @@
Release information for hdf5-1.0.23a
-----------------------------------
------------------------------------
CHANGES SINCE THE FIRST ALPHA
@ -37,12 +37,12 @@ Release information for hdf5-1.0.23a
which correspond to the standard C types like H5T_NATIVE_INT.
* More debugging support was added. If tracing is enabled at
configuration time and the HDF5_TRACE environment variable is set to
a file descriptor then all API calls will emit the function name,
argument names and values, and return value on that file number.
There is an html document that describes this. If appropriate
debugging options are enabled at configuration time, some packages
will display performance information on stderr.
configuration time (the default) and the HDF5_TRACE environment
variable is set to a file descriptor then all API calls will emit
the function name, argument names and values, and return value on
that file number. There is an html document that describes this.
If appropriate debugging options are enabled at configuration time,
some packages will display performance information on stderr.
* Data types can be stored in the file as independent objects and
multiple datasets can share a data type.
@ -60,7 +60,7 @@ Release information for hdf5-1.0.23a
HDF5.
* Hard and soft (symbolic) links are implemented which allow groups to
share objects.
share objects. Dangling and recursive symbolic links are supported.
* User-defined data compression is implemented although we may
generalize the interface to allow arbitrary user-defined filters

35
bin/checkapi Executable file
View File

@ -0,0 +1,35 @@
#!/usr/bin/perl -w
require 5.003;
# Purpose: insures that API functions aren't called internally.
# Usage: checkapi H5*.c
my $comment = 0;
while (<>) {
# Remove comments within the line.
s/\/\*.*?\*\///g;
# Process comment begin and end tokens on this line.
$comment-- if /\*\//; # count comment ends
next if $comment; # skip line if in comment
$comment++ if /\/\*/; # count comment starts
s/(.*)\/\*.*/$1/; # remove comments that begin on this line
# Remove character strings
s/\\.//g; # remove escaped characters
s/\".*?\"//g; # remove string constants
# Disregard the following hits
next if /^H5/;
next if /^\#/;
next if /FUNC_ENTER/;
next unless /(H5[A-Z]{1,2}[a-z]\w*)/;
print "$ARGV:$.: $1\n";
} continue {
if (eof) {
print "$ARGV:$.: bad comment nesting\n" if $comment;
$comment = 0;
close ARGV; # reset line number
}
}

View File

@ -35,6 +35,8 @@ while (<>) {
# Get rid of string constants if they begin and end on this line.
s/([\'\"])([^\1]|\\\1)*?\1/$1$1/g;
# Get rid of preprocessor directives
s/^\#.*//;
# Now find all function calls on this line
while (($name)=/\b([a-gi-z_A-GI-Z]\w*)\s*\(/) {

26
bin/debug-ohdr Executable file
View File

@ -0,0 +1,26 @@
#!/usr/bin/perl
require 5.003;
# Looks for lines emitted by H5O_open() and H5O_close() and tries to
# determine which objects were not properly closed.
while (<>) {
next unless /^([<>])(0x[\da-f]+|\d+)$/;
my ($op, $addr) = ($1, $2);
if ($op eq ">") {
# Open object
$obj{$addr} += 1;
} else {
# Close object
die unless $obj{$addr}>0;
$obj{$addr} -= 1;
delete $obj{$addr} unless $obj{$addr};
}
}
for (sort keys %obj) {
printf "%3d %s\n", $obj{$_}, $_;
}
exit 0;

View File

@ -2,6 +2,9 @@
require 5.003;
use Text::Tabs;
# NOTE: THE FORMAT OF HRETURN_ERROR AND HGOTO_ERROR MACROS HAS
# CHANGED. THIS SCRIPT NO LONGER WORKS! --rpm
# Copyright (C) 1997 National Center for Supercomputing Applications.
# All rights reserved.
#

154
bin/h5vers Executable file
View File

@ -0,0 +1,154 @@
#!/usr/bin/perl -w
require 5.003;
### Copyright © 1998 NCSA.
# Robb Matzke <matzke@llnl.gov>
# 17 July 1998
### Purpose
# Increments the hdf5 version number by changing the value of
# constants in the src/H5public.h file. The new version number is
# printed on the standard output. An alternate source file name can be
# specified as an argument. In any case, the original file is saved
# by appending a tilde `~' to the name.
### Usage:
# h5vers [OPTIONS] [FILE]
# Without options this program only displays the current version and
# doesn't modify any files or create backups. The default is to print
# the version number as a dotted triple like `1.0.24' but with the
# `-v' option the version will be printed as `version 1.0 release 24'.
#
# The `-s VERSION' switch will set the version as specified. If the
# string contains a dotted triple then it will be used as the version
# number, otherwise up to three numbers will be read from the end of
# the string and used as the major version, minor version, and release
# number. If any numbers are missing then zero is assumed. This
# allows versions to be specified like `-s "version 2.1 release 8"' or
# `-s hdf5-2.1.8.tar.bz2'. If the new version is less than the old
# version then a warning message is generated on standard error.
#
# The `-i [major|minor|release]' option increments the major, minor,
# or release (the default) number. If the minor number is incremented
# then the release number is set to zero; if the major number is
# incremented then the minor and release numbers are set to zero.
#
# If a file is specified then that file is used instead of
# ./H5public.h or ./src/H5public.h.
##############################################################################
sub getvers {
local ($_) = @_;
my (@vers);
($vers[0]) = /^\#\s*define\s+H5_VERS_MAJOR\s+(\d+)/m;
($vers[1]) = /^\#\s*define\s+H5_VERS_MINOR\s+(\d+)/m;
($vers[2]) = /^\#\s*define\s+H5_VERS_RELEASE\s+(\d+)/m;
return @vers;
}
sub setvers {
my ($contents, @vers) = @_;
$_[0] =~ s/^(\#\s*define\s+H5_VERS_MAJOR\s+)\d+/$1$vers[0]/m;
$_[0] =~ s/^(\#\s*define\s+H5_VERS_MINOR\s+)\d+/$1$vers[1]/m;
$_[0] =~ s/^(\#\s*define\s+H5_VERS_RELEASE\s+)\d+/$1$vers[2]/m;
}
# Parse arguments
my ($verbose, $set, $inc, $file);
my (@files) = ("H5public.h", "src/H5public.h", "../src/H5public.h");
while ($_ = shift) {
$_ eq "-s" && do {
die "-s switch needs a version number\n" unless @ARGV;
$set = shift;
next;
};
$_ eq "-i" && do {
die "-i switch needs a value\n" unless @ARGV;
$inc = shift;
next;
};
$_ eq "-v" && do {
$verbose = 1;
next;
};
/^-/ && die "unrecognized option: $ARGV[0]\n";
die "only one file name can be specified\n" if $file;
$file = _;
}
die "mutually exclusive options given\n" if $set && $inc;
# Determine file to use
unless ($file) {
for (@files) {
($file=$_,last) if -f $_;
}
}
die "unable to read file: $file\n" unless -r $file;
# Get the current version number.
open FILE, $file or die "unable to open $file: $!\n";
my ($contents) = join "", <FILE>;
close FILE;
my (@curver) = getvers $contents;
# Determine the new version number.
if ($set) {
if ($set =~ /(\d+)\.(\d+)\.(\d+)/) {
@newver = ($1, $2, $3);
} elsif ($set =~ /(\d+)\D+(\d+)\D+(\d+)\D*$/) {
@newver = ($1, $2, $3);
} elsif ($set =~ /(\d+)\D+(\d+)\D*$/) {
@newver = ($1, $2, 0);
} elsif ($set =~ /(\d+)\D*$/) {
@newver = ($1, 0, 0);
} else {
die "illegal version number specified: $set\n";
}
} elsif ($inc && $inc eq "major") {
$newver[0] = $curver[0]+1;
@newver[1,2] = (0,0);
} elsif ($inc && $inc eq "minor") {
$newver[0] = $curver[0];
$newver[1] = $curver[1]+1;
$newver[2] = 0;
} elsif ($inc && $inc eq "release") {
@newver[0,1] = @curver[0,1];
$newver[2] = $curver[2]+1;
} elsif ($inc) {
die "unknown increment field: $inc\n";
} else {
@newver = @curver;
}
# Print a warning if the version got smaller.
if ($newver[0]*1000000 + $newver[1]*1000 + $newver[2] <
$curver[0]*1000000 + $curver[1]*1000 + $curver[2]) {
printf STDERR "Warning: version decreased from %d.%d.%d to %d.%d.%d\n",
@curver, @newver;
}
# Update the version number if it changed.
if ($newver[0]!=$curver[0] ||
$newver[1]!=$curver[1] ||
$newver[2]!=$curver[2]) {
setvers $contents, @newver or die "unable to set version\n";
rename $file, "$file~" or die "unable to save backup file\n";
open FILE, ">$file" or die "unable to open $file but backup saved!\n";
print FILE $contents;
close FILE;
}
# Print the new version number
if ($verbose) {
printf "version %d.%d release %d\n", @newver;
} else {
printf "%d.%d.%d\n", @newver;
}
exit 0;

40
bin/iostats Executable file
View File

@ -0,0 +1,40 @@
#!/usr/bin/perl
# Usage: pipe the output of Linux's `strace' program into the stdin of
# this command, and the output of this command into gnuplot.
$filename = shift || "tstab2.h5";
$total = 0;
while (<>) {
if (!defined $fd) {
if (/^open\("(.*?)".*=\s+(\d+)/ && $1 eq $filename) {
$fd = $2;
$pos = 0;
}
} elsif (/^close\((\d+)/ && $1==$fd) {
$fd = undef;
} elsif (/^lseek\((\d+), -?\d+,.*= (\d+)/ &&
$1==$fd && $2>=0) {
$pos = $2;
} elsif (/^lseek\((\d+),/ && $1==$fd) {
die $_;
} elsif (/^write\((\d+), ".*?"(\.\.\.)?, \d+\)\s*= (\d+)/ &&
$1==$fd && $3>=0) {
my $nbytes = $3;
printf "%d %d\n", $total, $pos;
$pos += $nbytes;
$total += $nbytes;
} elsif (/^write\((\d+),/ && $1==$fd) {
die $_;
} elsif (/^read\((\d+), ".*?"(\.\.\.)?, \d+\)\s*= (\d+)/ &&
$1==$fd && $3>=0) {
my $nbytes = $3;
printf "%d %d\n", $total, $pos;
$pos += $nbytes;
$total += $nbytes;
} elsif (/^read\((\d+),/ && $1==$fd) {
die $_;
}
}

View File

@ -27,7 +27,7 @@
/* Version numbers */
#define H5_VERS_MAJOR 1 /* For major interface changes */
#define H5_VERS_MINOR 0 /* For minor interface changes */
#define H5_VERS_RELEASE 23 /* For interface tweaks & bug-fixes */
#define H5_VERS_RELEASE 24 /* For interface tweaks & bug-fixes */
#define H5_VERS_PATCH 0 /* For small groups of bug fixes */
#define H5check() H5vers_check(H5_VERS_MAJOR,H5_VERS_MINOR,\
@ -41,18 +41,29 @@
* proper way to detect failure is something like:
*
* if ((dset = H5Dopen (file, name))<0) {
* fprintf (stderr, "unable to open the requested dataset\n");
* fprintf (stderr, "unable to open the requested dataset\n");
* }
*/
typedef int herr_t;
/*
* Boolean type.
* Boolean type. Successful return values are zero (false) or positive
* (true). The typical true value is 1 but don't bet on it. Boolean
* functions can also fail, returning a negative value as described above.
* The proper way to test for truth is:
*
* if ((retval = H5Tcommitted(type))>0) {
* printf("data type is committed\n");
* } else if (!retval) {
* printf("data type is not committed\n");
* } else {
* printf("error determining whether data type is committed\n");
* }
*/
typedef int hbool_t;
/*
* The sizes of file-objects in hdf5 have there own types defined here. On
* The sizes of file-objects in hdf5 have their own types defined here. On
* most systems, these are the same as size_t and ssize_t, but on systems
* with small address spaces these are defined to be larger.
*/

View File

@ -344,12 +344,6 @@ bittests.o: \
../src/H5Gprivate.h \
../src/H5Gpublic.h \
../src/H5Bprivate.h
testhdf5.o: \
testhdf5.c \
testhdf5.h \
../src/H5private.h \
../src/H5public.h \
../src/H5config.h
tattr.o: \
tattr.c \
testhdf5.h \
@ -374,30 +368,6 @@ tattr.o: \
../src/H5Ppublic.h \
../src/H5Zpublic.h \
../src/H5Spublic.h
tselect.o: \
tselect.c \
testhdf5.h \
../src/H5private.h \
../src/H5public.h \
../src/H5config.h \
../src/H5Eprivate.h \
../src/H5Epublic.h \
../src/H5Ipublic.h \
../src/hdf5.h \
../src/H5Apublic.h \
../src/H5ACpublic.h \
../src/H5Bpublic.h \
../src/H5Dpublic.h \
../src/H5Fpublic.h \
../src/H5Gpublic.h \
../src/H5HGpublic.h \
../src/H5HLpublic.h \
../src/H5MFpublic.h \
../src/H5MMpublic.h \
../src/H5Opublic.h \
../src/H5Ppublic.h \
../src/H5Zpublic.h \
../src/H5Spublic.h
th5s.o: \
th5s.c \
testhdf5.h \
@ -470,3 +440,33 @@ big.o: \
../src/H5Spublic.h \
../src/H5Tpublic.h \
../src/H5private.h
testhdf5.o: \
testhdf5.c \
testhdf5.h \
../src/H5private.h \
../src/H5public.h \
../src/H5config.h
tselect.o: \
tselect.c \
testhdf5.h \
../src/H5private.h \
../src/H5public.h \
../src/H5config.h \
../src/H5Eprivate.h \
../src/H5Epublic.h \
../src/H5Ipublic.h \
../src/hdf5.h \
../src/H5Apublic.h \
../src/H5ACpublic.h \
../src/H5Bpublic.h \
../src/H5Dpublic.h \
../src/H5Fpublic.h \
../src/H5Gpublic.h \
../src/H5HGpublic.h \
../src/H5HLpublic.h \
../src/H5MFpublic.h \
../src/H5MMpublic.h \
../src/H5Opublic.h \
../src/H5Ppublic.h \
../src/H5Zpublic.h \
../src/H5Spublic.h

View File

@ -175,8 +175,8 @@ main(int argc, char *argv[])
H5version(&major, &minor, &release, &patch);
print_func("\nFor help use: testhdf5 -help\n");
print_func("Linked with hdf5-%u.%u.%u%c\n\n", (unsigned) major,
(unsigned) minor, (unsigned) release, 'a' + patch);
print_func("Linked with hdf5 version %u.%u release %u\n",
(unsigned)major, (unsigned)minor, (unsigned)release);
for (CLLoop = 1; CLLoop < argc; CLLoop++) {
if ((argc > CLLoop + 1) && ((HDstrcmp(argv[CLLoop], "-verbose") == 0) ||
(HDstrcmp(argv[CLLoop], "-v") == 0))) {

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@ -19,13 +19,39 @@
# define __unused__ __attribute__((unused))
#endif
/* Verbosity level */
static int verbose_g = 0;
/*-------------------------------------------------------------------------
* Function: usage
*
* Purpose: Prints a usage message on stderr and then returns.
*
* Return: void
*
* Programmer: Robb Matzke
* Thursday, July 16, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
usage (const char *progname)
{
fprintf (stderr, "usage: %s FILE [GROUP]\n", progname);
fprintf (stderr, " The file name may contain a printf integer format "
"to open a file family.\n");
exit (1);
fprintf(stderr, "\
usage: %s [OPTIONS] FILE [GROUP]\n\
OPTIONS\n\
-h, -?, --help Print a usage message and exit\n\
-v, --verbose Generate more verbose output\n\
--version Print version number and exit\n\
FILE\n\
The file name may include a printf(3C) integer format such as\n\
\"%%05d\" to open a file family.\n\
GROUP\n\
If a group name is not specified then the contents of the root group\n\
\"/\" are displayed.\n", progname);
}
@ -117,11 +143,12 @@ list (hid_t group, const char *name, void __unused__ *op_data)
int ndims = H5Sextent_dims(space, size, maxsize);
printf ("Dataset {");
for (i=0; i<ndims; i++) {
HDfprintf (stdout, "%s%Hu", i?", ":"", size[i]);
if (maxsize[i]==H5S_UNLIMITED)
HDfprintf (stdout, "%s%Hu", i?", ":"", size[i]);
if (maxsize[i]==H5S_UNLIMITED) {
HDfprintf (stdout, "/%s", "Inf");
else
HDfprintf (stdout, "/%Hu", maxsize[i]);
} else if (maxsize[i]!=size[i] || verbose_g>0) {
HDfprintf(stdout, "/%Hu", maxsize[i]);
}
}
printf ("}\n");
H5Dclose (space);
@ -174,14 +201,68 @@ main (int argc, char *argv[])
const char *fname = NULL;
const char *gname = "/";
const char *progname;
const char *s;
int argno;
/* Arguments */
/* Name of this program without the path */
if ((progname=strrchr (argv[0], '/'))) progname++;
else progname = argv[0];
if (argc<2 || argc>3) usage (progname);
fname = argv[1];
if (argc>=3) gname = argv[2];
/* Switches come before non-switch arguments */
for (argno=1; argno<argc && '-'==argv[argno][0]; argno++) {
if (!strcmp(argv[argno], "--")) {
/* Last switch */
argno++;
break;
} else if (!strcmp(argv[argno], "--help")) {
usage(progname);
exit(0);
} else if (!strcmp(argv[argno], "--verbose")) {
verbose_g++;
} else if (!strcmp(argv[argno], "--version")) {
printf("This is %s version %u.%u release %u\n",
progname, H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE);
exit(0);
} else if ('-'!=argv[argno][1]) {
/* Single-letter switches */
for (s=argv[argno]+1; *s; s++) {
switch (*s) {
case '?':
case 'h': /* --help */
usage(progname);
exit(0);
case 'v': /* --verbose */
verbose_g++;
break;
case 'V': /* --version */
printf("This is %s version %u.%u release %u\n",
progname, H5_VERS_MAJOR, H5_VERS_MINOR,
H5_VERS_RELEASE);
exit(0);
default:
usage(progname);
exit(1);
}
}
} else {
usage(progname);
exit(1);
}
}
/* Non-switch arguments */
if (argno<argc) {
fname = argv[argno++];
} else {
usage(progname);
exit(1);
}
if (argno<argc) gname = argv[argno++];
if (argno<argc) {
usage(progname);
exit(1);
}
/*
* Open the file. If the file name contains a `%' then assume that a
* file family is being opened.