Fix issues in tools code after Subfiling VFD updates (#1973)

src/H5FDsubfiling/H5FDioc.c

@@ -380,6 +380,7 @@ done:
     if (ioc_conf) {
         if (ioc_conf->under_fapl_id >= 0 && H5I_dec_ref(ioc_conf->under_fapl_id) < 0)
             H5_SUBFILING_DONE_ERROR(H5E_PLIST, H5E_CANTDEC, FAIL, "can't close IOC under FAPL");
+        ioc_conf->under_fapl_id = H5I_INVALID_HID;
         H5FL_FREE(H5FD_ioc_config_t, ioc_conf);
     }
 
@@ -749,6 +750,7 @@ H5FD__ioc_fapl_free(void *_fapl)
 
     if (fapl->under_fapl_id >= 0 && H5I_dec_ref(fapl->under_fapl_id) < 0)
         H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTDEC, FAIL, "can't close IOC under FAPL ID");
+    fapl->under_fapl_id = H5I_INVALID_HID;
 
     /* Free the property list */
     fapl = H5FL_FREE(H5FD_ioc_config_t, fapl);
@@ -841,6 +843,12 @@ H5FD__ioc_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr)
     /* Fill in the file config values */
     HDmemcpy(&file_ptr->fa, config_ptr, sizeof(H5FD_ioc_config_t));
 
+    /* Copy the ioc FAPL. */
+    if (H5FD__copy_plist(config_ptr->under_fapl_id, &(file_ptr->fa.under_fapl_id)) < 0) {
+        file_ptr->fa.under_fapl_id = H5I_INVALID_HID;
+        H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, NULL, "can't copy IOC under FAPL");
+    }
+
     if (NULL != (file_ptr->file_path = HDrealpath(name, NULL))) {
         char *path      = NULL;
         char *directory = dirname(path);
@@ -866,12 +874,8 @@ H5FD__ioc_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr)
             H5_SUBFILING_SYS_GOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't resolve subfile path");
     }
 
-    /* Copy the ioc FAPL. */
-    if (H5FD__copy_plist(config_ptr->under_fapl_id, &(file_ptr->fa.under_fapl_id)) < 0)
-        H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, NULL, "can't copy IOC under FAPL");
-
     /* Check the underlying driver (sec2/mpio/etc.) */
-    if (NULL == (plist_ptr = (H5P_genplist_t *)H5I_object(config_ptr->under_fapl_id)))
+    if (NULL == (plist_ptr = (H5P_genplist_t *)H5I_object(file_ptr->fa.under_fapl_id)))
         H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list");
 
     if (H5P_peek(plist_ptr, H5F_ACS_FILE_DRV_NAME, &driver_prop) < 0)
@@ -900,9 +904,9 @@ H5FD__ioc_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr)
         if (H5F_ACC_EXCL & flags)
             ioc_flags |= O_EXCL;
 
-        file_ptr->ioc_file = H5FD_open(file_ptr->file_path, flags, config_ptr->under_fapl_id, HADDR_UNDEF);
+        file_ptr->ioc_file = H5FD_open(file_ptr->file_path, flags, file_ptr->fa.under_fapl_id, HADDR_UNDEF);
         if (file_ptr->ioc_file) {
-            if (H5FDget_vfd_handle(file_ptr->ioc_file, config_ptr->under_fapl_id, &file_handle) < 0)
+            if (H5FDget_vfd_handle(file_ptr->ioc_file, file_ptr->fa.under_fapl_id, &file_handle) < 0)
                 H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get file handle");
         }
         else {
@@ -956,6 +960,10 @@ done:
             H5_SUBFILING_MPI_DONE_ERROR(NULL, "MPI_Barrier failed", mpi_code);
     }
 
+    if (config_ptr == &default_config)
+        if (H5I_dec_ref(config_ptr->under_fapl_id) < 0)
+            H5_SUBFILING_DONE_ERROR(H5E_PLIST, H5E_CANTCLOSEOBJ, NULL, "can't close IOC under FAPL");
+
     if (NULL == ret_value) {
         if (file_ptr) {
             if (H5FD__ioc_close_int(file_ptr) < 0)

src/H5FDsubfiling/H5FDsubfiling.c

@@ -354,13 +354,7 @@ H5FD_subfiling_init(void)
                     "Subfiling VFD requires the use of MPI_Init_thread with MPI_THREAD_MULTIPLE");
         }
         else {
-            char *env_var;
+            int required = MPI_THREAD_MULTIPLE;
-            int   required = MPI_THREAD_MULTIPLE;
-
-            /* Ensure that Subfiling VFD has been loaded dynamically */
-            env_var = HDgetenv(HDF5_DRIVER);
-            if (!env_var || HDstrcmp(env_var, H5FD_SUBFILING_NAME))
-                H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTINIT, H5I_INVALID_HID, "MPI isn't initialized");
 
             if (MPI_SUCCESS != (mpi_code = MPI_Init_thread(NULL, NULL, required, &provided)))
                 H5_SUBFILING_MPI_GOTO_ERROR(H5I_INVALID_HID, "MPI_Init_thread failed", mpi_code);
@@ -467,6 +461,10 @@ H5Pset_fapl_subfiling(hid_t fapl_id, const H5FD_subfiling_config_t *vfd_config)
 
     /*NO TRACE*/
 
+    /* Ensure Subfiling (and therefore MPI) is initialized before doing anything */
+    if (H5FD_subfiling_init() < 0)
+        H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTINIT, FAIL, "can't initialize subfiling VFD");
+
     if (NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
         H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list");
 
@@ -913,6 +911,10 @@ H5FD__subfiling_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t ma
     }
 
     HDmemcpy(&file_ptr->fa, config_ptr, sizeof(H5FD_subfiling_config_t));
+    if (H5FD__copy_plist(config_ptr->ioc_fapl_id, &(file_ptr->fa.ioc_fapl_id)) < 0) {
+        file_ptr->fa.ioc_fapl_id = H5I_INVALID_HID;
+        H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, NULL, "can't copy FAPL");
+    }
 
     if (NULL != (file_ptr->file_path = HDrealpath(name, NULL))) {
         char *path      = NULL;
@@ -939,9 +941,6 @@ H5FD__subfiling_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t ma
             H5_SUBFILING_SYS_GOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't resolve subfile path");
     }
 
-    if (H5FD__copy_plist(config_ptr->ioc_fapl_id, &(file_ptr->fa.ioc_fapl_id)) < 0)
-        H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, NULL, "can't copy FAPL");
-
     file_ptr->sf_file = H5FD_open(name, flags, file_ptr->fa.ioc_fapl_id, HADDR_UNDEF);
     if (!file_ptr->sf_file)
         H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTOPENFILE, NULL, "unable to open IOC file");
@@ -1011,6 +1010,10 @@ H5FD__subfiling_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t ma
     ret_value = (H5FD_t *)file_ptr;
 
 done:
+    if (config_ptr == &default_config)
+        if (H5I_dec_ref(config_ptr->ioc_fapl_id) < 0)
+            H5_SUBFILING_DONE_ERROR(H5E_PLIST, H5E_CANTCLOSEOBJ, NULL, "can't close IOC FAPL");
+
     if (NULL == ret_value) {
         if (file_ptr) {
             /* Participate in possible MPI collectives on failure */
@@ -2389,6 +2392,10 @@ H5FD__subfiling_del(const char *name, hid_t fapl)
         H5_SUBFILING_GOTO_ERROR(H5E_FILE, H5E_CANTDELETE, FAIL, "unable to delete file");
 
 done:
+    if (subfiling_config == &default_config)
+        if (H5I_dec_ref(subfiling_config->ioc_fapl_id) < 0)
+            H5_SUBFILING_DONE_ERROR(H5E_PLIST, H5E_CANTCLOSEOBJ, FAIL, "unable to close IOC FAPL");
+
     H5_SUBFILING_FUNC_LEAVE_API;
 }
 

tools/lib/h5tools.c

@@ -873,6 +873,12 @@ h5tools_get_vfd_name(hid_t fapl_id, char *drivername, size_t drivername_size)
         else if (driver_id == H5FD_HDFS)
             driver_name = drivernames[HDFS_VFD_IDX];
 #endif
+#ifdef H5_HAVE_SUBFILING_VFD
+        else if (driver_id == H5FD_SUBFILING)
+            driver_name = drivernames[SUBFILING_VFD_IDX];
+#endif
+        else if (driver_id == H5FD_ONION)
+            driver_name = drivernames[ONION_VFD_IDX];
         else
             driver_name = "unknown";
 
@@ -1016,8 +1022,13 @@ h5tools_fopen(const char *fname, unsigned flags, hid_t fapl_id, hbool_t use_spec
                     continue;
 
                 /* Can we open the file with this combo? */
-                if ((fid = h5tools_fopen(fname, flags, tmp_fapl_id, TRUE, drivername, drivername_size)) >=
+                H5E_BEGIN_TRY
-                    0) {
+                {
+                    fid = h5tools_fopen(fname, flags, tmp_fapl_id, TRUE, drivername, drivername_size);
+                }
+                H5E_END_TRY;
+
+                if (fid >= 0) {
                     used_fapl_id = tmp_fapl_id;
                     H5TOOLS_GOTO_DONE(fid);
                 }