Merge pull request #10 in ~VCHOI/my_third_fork from develop to bugfix/HDFFV-10808-h5pset_file_space_strategy-succeeds

* commit '1d8f7bf297100ec11204442708a7f670a89f3f02':
  Updated the Java attribute test so that attribute access property lists are created and used correctly.
  Add test cleanup
  Need to shift off two arguments
  HDFFV-9407 add autotools test
  Move pragma statements outside of routines, to make older compilers happy.
  HDFFV-9407 Add test

MANIFEST

@@ -1698,6 +1698,7 @@
 ./tools/testfiles/h5dump-help.txt
 ./tools/testfiles/non_existing.ddl
 ./tools/testfiles/packedbits.ddl
+./tools/testfiles/t128bit_float.h5
 ./tools/testfiles/taindices.h5
 ./tools/testfiles/tall-1.ddl
 ./tools/testfiles/tall-2.ddl

config/cmake/CTestCustom.cmake

@@ -93,6 +93,7 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
     H5DUMP_PACKED_BITS-clearall-objects
     H5DUMP-XML-clearall-objects
     H5DUMP_VDS-clearall-objects
+    H5DUMP-t128bit_float      #uses grepTest.cmake
     ######### tools/h5format_convert #########
     H5FC-clearall-objects
     ######### tools/h5import #########

java/test/TestH5A.java

@@ -50,6 +50,7 @@ public class TestH5A {
     long type_id = -1;
     long space_id = -1;
     long lapl_id = -1;
+    long aapl_id = -1;
 
     private final void _deleteFile(String filename) {
         File file = new File(filename);
@@ -90,8 +91,10 @@ public class TestH5A {
             assertTrue("TestH5A.createH5file: _createDataset: ", H5did > 0);
             space_id = H5.H5Screate(HDF5Constants.H5S_NULL);
             assertTrue(space_id > 0);
-            lapl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_ACCESS);
+            lapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS);
             assertTrue(lapl_id > 0);
+            aapl_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_ACCESS);
+            assertTrue(aapl_id > 0);
             type_id = H5.H5Tenum_create(HDF5Constants.H5T_STD_I32LE);
             assertTrue(type_id > 0);
             int status = H5.H5Tenum_insert(type_id, "test", 1);
@@ -122,6 +125,8 @@ public class TestH5A {
             try {H5.H5Sclose(space_id);} catch (Exception ex) {}
         if (lapl_id > 0)
             try {H5.H5Pclose(lapl_id);} catch (Exception ex) {}
+        if (aapl_id > 0)
+            try {H5.H5Pclose(aapl_id);} catch (Exception ex) {}
         System.out.println();
     }
 
@@ -194,7 +199,6 @@ public class TestH5A {
         long n = 0;
         long attr_id = -1;
         long attribute_id = -1;
-        long aapl_id = HDF5Constants.H5P_DEFAULT;
 
         try {
             attr_id = H5.H5Acreate(H5did, "file", type_id, space_id,
@@ -203,7 +207,7 @@ public class TestH5A {
             // Opening the existing attribute, obj_name(Created by H5ACreate2)
             // by index, attached to an object identifier.
             attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC,
-                    0, HDF5Constants.H5P_DEFAULT, lapl_id);
+                    0, aapl_id, lapl_id);
 
             assertTrue("testH5Aopen_by_idx: H5Aopen_by_idx", attribute_id >= 0);
 
@@ -258,7 +262,7 @@ public class TestH5A {
         try {
             attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
                     type_id, space_id, HDF5Constants.H5P_DEFAULT,
-                    HDF5Constants.H5P_DEFAULT, lapl_id);
+                    aapl_id, lapl_id);
             assertTrue("testH5Acreate_by_name: H5Acreate_by_name",
                     attribute_id >= 0);
 
@@ -289,7 +293,7 @@ public class TestH5A {
         boolean bool_val = false;
 
         try {
-            attr_id = H5.H5Acreate(loc_id, old_attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, lapl_id);
+            attr_id = H5.H5Acreate(loc_id, old_attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id);
 
             ret_val = H5.H5Arename(loc_id, old_attr_name, new_attr_name);
 
@@ -328,7 +332,7 @@ public class TestH5A {
 
         try {
             attr_id = H5.H5Acreate_by_name(loc_id, obj_name, old_attr_name,
-                    type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+                    type_id, space_id, HDF5Constants.H5P_DEFAULT, aapl_id, lapl_id);
 
             ret_val = H5.H5Arename_by_name(loc_id, obj_name, old_attr_name,
                     new_attr_name, lapl_id);
@@ -369,7 +373,7 @@ public class TestH5A {
         try {
             attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
                     type_id, space_id, HDF5Constants.H5P_DEFAULT,
-                    HDF5Constants.H5P_DEFAULT, lapl_id);
+                    aapl_id, lapl_id);
             assertTrue("testH5Aget_name: H5Acreate_by_name ", attribute_id > 0);
             ret_name = H5.H5Aget_name(attribute_id);
             assertEquals(ret_name, attr_name);

release_docs/RELEASE.txt

@@ -59,11 +59,11 @@ New Features
       (ADB - 2019/06/12, HDFFV-10805)
 
     - Add options to enable or disable building tools and tests
-    
+
-      Configure options --enable-tests and --enable-tools were added for 
+      Configure options --enable-tests and --enable-tools were added for
       autotools configure.  These options are enabled by default, and can be
-      disabled with either --disable-tests (or tools) or --enable-tests=no 
+      disabled with either --disable-tests (or tools) or --enable-tests=no
-      (or --enable-tools=no).  Build time is reduced ~20% when tools are 
+      (or --enable-tools=no).  Build time is reduced ~20% when tools are
       disabled, 35% when tests are disabled, 45% when both are disabled.
       Reenabling them after the initial build requires running configure
       again with the option(s) enabled.
@@ -240,7 +240,6 @@ New Features
 
       (ADB - 2018/12/12, HDFVIEW-4)
 
-
     - Removed H5I_REFERENCE from the Java wrappers
 
       This ID class was never used by the library and has been removed
@@ -251,7 +250,12 @@ New Features
 
     Tools:
     ------
-    -
+    - h5dump was fixed for 128-bit floats, but was missing a test.
+
+      New test greps for the first 15 numbers of the 128-bit value.
+
+      (ADB - 2019/06/23, HDFFV-9407)
+
 
     High-Level APIs:
     ---------------
@@ -286,7 +290,7 @@ Bug Fixes since HDF5-1.10.3 release
       H5F_LIBVER_V18, the H5Ocopy() call will fail with the error stack indicating
       that the fill value version is out of bounds.
 
-      This was fixed by changing the fill value message version to H5O_FILL_VERSION_3 
+      This was fixed by changing the fill value message version to H5O_FILL_VERSION_3
       (from H5O_FILL_VERSION_2) for H5F_LIBVER_V18.
 
       (VC - 2019/6/14, HDFFV-10800)

src/H5Tnative.c

@@ -515,6 +515,9 @@ done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5T__get_native_type() */
 
+/* Disable warning for intentional identical branches here -QAK */
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wduplicated-branches"
 
 /*-------------------------------------------------------------------------
  * Function:    H5T__get_native_integer
@@ -551,9 +554,6 @@ H5T__get_native_integer(size_t prec, H5T_sign_t sign, H5T_direction_t direction,
     FUNC_ENTER_STATIC
 
     if(direction == H5T_DIR_DEFAULT || direction == H5T_DIR_ASCEND) {
-/* Disable warning for intentional identical branches here -QAK */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wduplicated-branches"
         if(prec <= H5T_get_precision((H5T_t *)H5I_object(H5T_NATIVE_SCHAR_g))) {
             match = H5T_NATIVE_INT_MATCH_CHAR;
             native_size = sizeof(char);
@@ -573,7 +573,6 @@ H5T__get_native_integer(size_t prec, H5T_sign_t sign, H5T_direction_t direction,
             match = H5T_NATIVE_INT_MATCH_LLONG;
             native_size = sizeof(long long);
         }
-#pragma GCC diagnostic pop
     } else if(direction == H5T_DIR_DESCEND) {
         if(prec > H5T_get_precision((H5T_t *)H5I_object(H5T_NATIVE_LONG_g))) {
             match = H5T_NATIVE_INT_MATCH_LLONG;
@@ -659,7 +658,11 @@ H5T__get_native_integer(size_t prec, H5T_sign_t sign, H5T_direction_t direction,
 done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5T__get_native_integer() */
+#pragma GCC diagnostic pop
 
+/* Disable warning for intentional identical branches here -QAK */
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wduplicated-branches"
 
 /*-------------------------------------------------------------------------
  * Function:    H5T__get_native_float
@@ -698,9 +701,6 @@ H5T__get_native_float(size_t size, H5T_direction_t direction, size_t *struct_ali
     HDassert(size>0);
 
     if(direction == H5T_DIR_DEFAULT || direction == H5T_DIR_ASCEND) {
-/* Disable warning for intentional identical branches here -QAK */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wduplicated-branches"
         if(size<=sizeof(float)) {
             match=H5T_NATIVE_FLOAT_MATCH_FLOAT;
 	    native_size = sizeof(float);
@@ -724,7 +724,6 @@ H5T__get_native_float(size_t size, H5T_direction_t direction, size_t *struct_ali
             native_size = sizeof(double);
 #endif
 	}
-#pragma GCC diagnostic pop
     } else {
 #if H5_SIZEOF_LONG_DOUBLE !=0
         if(size>sizeof(double)) {
@@ -788,7 +787,11 @@ H5T__get_native_float(size_t size, H5T_direction_t direction, size_t *struct_ali
 done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5T__get_native_float() */
+#pragma GCC diagnostic pop
 
+/* Disable warning for intentional identical branches here -QAK */
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wduplicated-branches"
 
 /*-------------------------------------------------------------------------
  * Function:    H5T__get_native_bitfield
@@ -818,9 +821,6 @@ H5T__get_native_bitfield(size_t prec, H5T_direction_t direction,
     FUNC_ENTER_STATIC
 
     if(direction == H5T_DIR_DEFAULT || direction == H5T_DIR_ASCEND) {
-/* Disable warning for intentional identical branches here -QAK */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wduplicated-branches"
         if(prec<=H5T_get_precision((H5T_t *)H5I_object(H5T_NATIVE_B8_g))) {
             tid = H5T_NATIVE_B8;
             native_size = 1;
@@ -842,7 +842,6 @@ H5T__get_native_bitfield(size_t prec, H5T_direction_t direction,
             native_size = 8;
             align = H5T_NATIVE_UINT64_ALIGN_g;
         }
-#pragma GCC diagnostic pop
     } else if(direction == H5T_DIR_DESCEND) {
         if(prec>H5T_get_precision((H5T_t *)H5I_object(H5T_NATIVE_B32_g))) {
             tid = H5T_NATIVE_B64;
@@ -878,6 +877,7 @@ H5T__get_native_bitfield(size_t prec, H5T_direction_t direction,
 done:
     FUNC_LEAVE_NOAPI(ret_value)
 } /* end H5T__get_native_bitfield() */
+#pragma GCC diagnostic pop
 
 
 /*-------------------------------------------------------------------------

tools/test/h5dump/CMakeTests.cmake

@@ -320,6 +320,7 @@
       ${HDF5_TOOLS_DIR}/testfiles/tvlenstr_array.h5
       ${HDF5_TOOLS_DIR}/testfiles/tvlstr.h5
       ${HDF5_TOOLS_DIR}/testfiles/tvms.h5
+      ${HDF5_TOOLS_DIR}/testfiles/t128bit_float.h5
       ${HDF5_TOOLS_DIR}/testfiles/zerodim.h5
   )
   set (HDF5_ERROR_REFERENCE_TEST_FILES
@@ -674,6 +675,32 @@
     endif ()
   endmacro ()
 
+  macro (ADD_H5_GREP_TEST resultfile resultcode result_check)
+    if (NOT HDF5_ENABLE_USING_MEMCHECKER)
+      # Remove any output file left over from previous test run
+      add_test (
+          NAME H5DUMP-${resultfile}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${resultfile}.out
+              ${resultfile}.out.err
+      )
+      set_tests_properties (H5DUMP-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/std")
+      add_test (
+          NAME H5DUMP-${resultfile}
+          COMMAND "${CMAKE_COMMAND}"
+              -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_ext}>"
+              -D "TEST_ARGS:STRING=${ARGN}"
+              -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles/std"
+              -D "TEST_OUTPUT=${resultfile}.out"
+              -D "TEST_EXPECT=${resultcode}"
+              -D "TEST_REFERENCE=${result_check}"
+              -P "${HDF_RESOURCES_EXT_DIR}/grepTest.cmake"
+      )
+    set_tests_properties (H5DUMP-${resultfile} PROPERTIES DEPENDS "H5DUMP-${resultfile}-clear-objects")
+    endif ()
+  endmacro ()
+
   macro (ADD_H5ERR_MASK_TEST resultfile resultcode result_errcheck)
     if (NOT HDF5_ENABLE_USING_MEMCHECKER)
       # Remove any output file left over from previous test run
@@ -1551,6 +1578,9 @@
   # test to verify HDFFV-10333: error similar to H5O_attr_decode in the jira issue
   ADD_H5_TEST (err_attr_dspace 1 err_attr_dspace.h5)
 
+  # test to verify HDFFV-9407: long double full precision
+  ADD_H5_GREP_TEST (t128bit_float 1 "1.123456789012345" -m %.35Lf t128bit_float.h5)
+
 ##############################################################################
 ###    P L U G I N  T E S T S
 ##############################################################################

tools/test/h5dump/testh5dump.sh.in

@@ -34,6 +34,7 @@ H5IMPORT_BIN=`pwd`/$H5IMPORT      # The path of the h5import  tool binary
 RM='rm -rf'
 CMP='cmp'
 DIFF='diff -c'
+GREP='grep'
 CP='cp'
 DIRNAME='dirname'
 LS='ls'
@@ -83,6 +84,7 @@ $SRC_H5DUMP_TESTFILES/charsets.h5
 $SRC_H5DUMP_TESTFILES/file_space.h5
 $SRC_H5DUMP_TESTFILES/filter_fail.h5
 $SRC_H5DUMP_TESTFILES/packedbits.h5
+$SRC_H5DUMP_TESTFILES/t128bit_float.h5
 $SRC_H5DUMP_TESTFILES/taindices.h5
 $SRC_H5DUMP_TESTFILES/tall.h5
 $SRC_H5DUMP_TESTFILES/tarray1.h5
@@ -903,6 +905,36 @@ TOOLTEST_HELP() {
 
 }
 
+# Call the h5dump tool and grep for a value
+#
+GREPTEST()
+{
+    expectdata=$1
+    actual=$TESTDIR/$2
+    actual_err="$TESTDIR/`basename $2 .ddl`.oerr"
+    shift
+    shift
+
+    # Run test.
+    TESTING $DUMPER -p $@
+    (
+      cd $TESTDIR
+      $ENVCMD $RUNSERIAL $DUMPER_BIN -p "$@"
+    ) >$actual 2>$actual_err
+    $GREP $expectdata $actual > /dev/null
+    if [ $? -eq 0 ]; then
+        echo " PASSED"
+    else
+        echo " FAILED"
+        nerrors="`expr $nerrors + 1`"
+    fi
+
+    # Clean up output file
+    if test -z "$HDF5_NOCLEANUP"; then
+     rm -f $actual $actual_err
+    fi
+}
+
 # Print a "SKIP" message
 SKIP() {
    TESTING $DUMPER $@
@@ -1363,6 +1395,9 @@ TOOLTEST3 non_existing.ddl --enable-error-stack tgroup.h5 non_existing.h5
 # test to verify HDFFV-10333: error similar to H5O_attr_decode in the jira issue
 TOOLTEST err_attr_dspace.ddl err_attr_dspace.h5
 
+# test to verify HDFFV-9407: long double full precision
+GREPTEST "1.123456789012345" t128bit_float.ddl -m %.35Lf t128bit_float.h5
+
 # Clean up temporary files/directories
 CLEAN_TESTFILES_AND_TESTDIR