mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-11-21 01:04:10 +08:00
[svn-r7742] Purpose:
Code cleanup
Description:
Clean up setup code for collective I/O transfers to make the logic more
obvious.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too minor for h5committest
This commit is contained in:
Quincey Koziol
parent
d8b497ecef
commit
3c7887424f
119
src/H5Dio.c
119
src/H5Dio.c
@ -80,26 +80,26 @@ static herr_t H5D_write(H5D_t *dataset, const H5T_t *mem_type,
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static herr_t
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H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, hbool_t doing_mpio, H5FD_mpio_xfer_t xfer_mode,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode,
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hid_t src_id, hid_t dst_id, void *buf/*out*/);
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static herr_t
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H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, hbool_t doing_mpio, H5FD_mpio_xfer_t xfer_mode,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode,
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hid_t src_id, hid_t dst_id, const void *buf);
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static herr_t
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H5D_chunk_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, hbool_t doing_mpio, H5FD_mpio_xfer_t xfer_mode,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode,
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hid_t src_id, hid_t dst_id, void *buf/*out*/);
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static herr_t
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H5D_chunk_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, hbool_t doing_mpio, H5FD_mpio_xfer_t xfer_mode,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode,
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hid_t src_id, hid_t dst_id, const void *buf);
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#ifdef H5_HAVE_PARALLEL
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static herr_t
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H5D_io_assist_mpio(H5P_genplist_t *dx_plist, hbool_t doing_mpio, H5FD_mpio_xfer_t xfer_mode,
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H5D_io_assist_mpio(H5P_genplist_t *dx_plist, H5FD_mpio_xfer_t xfer_mode,
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hbool_t *xfer_mode_changed);
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#endif /*H5_HAVE_PARALLEL*/
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static herr_t H5D_create_chunk_map(H5D_t *dataset, const H5T_t *mem_type,
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@ -514,7 +514,6 @@ H5D_read(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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hid_t src_id = -1, dst_id = -1;/*temporary type atoms */
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H5S_conv_t *sconv=NULL; /*space conversion funcs*/
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H5FD_mpio_xfer_t xfer_mode=H5FD_MPIO_INDEPENDENT; /*xfer_mode for this request */
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hbool_t doing_mpio=0; /*This is an MPIO access */
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H5P_genplist_t *dx_plist=NULL; /* Data transfer property list */
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H5P_genplist_t *dc_plist; /* Dataset creation roperty list */
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unsigned sconv_flags=0; /* Flags for the space conversion */
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@ -545,23 +544,16 @@ H5D_read(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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#ifdef H5_HAVE_PARALLEL
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/* Collect Parallel I/O information for possible later use */
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if (H5FD_MPIO==H5P_peek_hid_t(dx_plist,H5D_XFER_VFL_ID_NAME)) {
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doing_mpio++;
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xfer_mode=(H5FD_mpio_xfer_t)H5P_peek_unsigned(dx_plist, H5D_XFER_IO_XFER_MODE_NAME);
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} /* end if */
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/* Collective access is not permissible without a MPI based VFD */
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if (doing_mpio && xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPI(dataset->ent.file))
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HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL, "collective access for MPIO & MPIPOSIX drivers only")
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xfer_mode=(H5FD_mpio_xfer_t)H5P_peek_unsigned(dx_plist, H5D_XFER_IO_XFER_MODE_NAME);
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/* Set the "parallel I/O possible" flag, for H5S_find() */
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if (H5S_mpi_opt_types_g && IS_H5FD_MPIO(dataset->ent.file)) {
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/* Only collective write should call this since it eventually
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* calls MPI_File_set_view which is a collective call.
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* See H5S_mpio_spaces_xfer() for details.
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*/
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if (doing_mpio && xfer_mode==H5FD_MPIO_COLLECTIVE)
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sconv_flags |= H5S_CONV_PAR_IO_POSSIBLE;
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} /* end if */
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/* Collective access is not permissible without a MPI based VFD */
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if (xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPI(dataset->ent.file))
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HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL, "collective access for MPI-based drivers only")
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/* Set the "parallel I/O possible" flag, for H5S_find(), if we are doing collective I/O */
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/* (Don't set the parallel I/O possible flag for the MPI-posix driver, since it doesn't do real collective I/O) */
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if (H5S_mpi_opt_types_g && xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPIPOSIX(dataset->ent.file))
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sconv_flags |= H5S_CONV_PAR_IO_POSSIBLE;
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#endif /*H5_HAVE_PARALLEL*/
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/* Make certain that the number of elements in each selection is the same */
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@ -648,12 +640,12 @@ H5D_read(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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/* Determine correct I/O routine to invoke */
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if(dataset->layout.type!=H5D_CHUNKED) {
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if(H5D_contig_read(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, dc_plist,
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dx_plist, dxpl_id, doing_mpio, xfer_mode, src_id, dst_id, buf)<0)
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dx_plist, dxpl_id, xfer_mode, src_id, dst_id, buf)<0)
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HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data")
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} /* end if */
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else {
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if(H5D_chunk_read(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, dc_plist,
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dx_plist, dxpl_id, doing_mpio, xfer_mode, src_id, dst_id, buf)<0)
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dx_plist, dxpl_id, xfer_mode, src_id, dst_id, buf)<0)
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HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data")
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} /* end else */
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@ -725,7 +717,6 @@ H5D_write(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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hid_t src_id = -1, dst_id = -1;/*temporary type atoms */
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H5S_conv_t *sconv=NULL; /*space conversion funcs*/
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H5FD_mpio_xfer_t xfer_mode=H5FD_MPIO_INDEPENDENT; /*xfer_mode for this request */
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hbool_t doing_mpio=0; /*This is an MPIO access */
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H5P_genplist_t *dx_plist=NULL; /* Data transfer property list */
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H5P_genplist_t *dc_plist; /* Dataset creation roperty list */
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unsigned sconv_flags=0; /* Flags for the space conversion */
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@ -776,24 +767,16 @@ H5D_write(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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#ifdef H5_HAVE_PARALLEL
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/* Collect Parallel I/O information for possible later use */
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if (H5FD_MPIO==H5P_peek_hid_t(dx_plist,H5D_XFER_VFL_ID_NAME)) {
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doing_mpio++;
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xfer_mode=(H5FD_mpio_xfer_t)H5P_peek_unsigned(dx_plist, H5D_XFER_IO_XFER_MODE_NAME);
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} /* end if */
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xfer_mode=(H5FD_mpio_xfer_t)H5P_peek_unsigned(dx_plist, H5D_XFER_IO_XFER_MODE_NAME);
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/* Collective access is not permissible without a MPI based VFD */
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if (doing_mpio && xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPI(dataset->ent.file))
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HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL, "collective access for MPIO driver only")
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if (xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPI(dataset->ent.file))
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HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL, "collective access for MPI-based driver only")
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/* Set the "parallel I/O possible" flag, for H5S_find() */
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if (H5S_mpi_opt_types_g && IS_H5FD_MPIO(dataset->ent.file)) {
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/* Only collective write should call this since it eventually
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* calls MPI_File_set_view which is a collective call.
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* See H5S_mpio_spaces_xfer() for details.
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*/
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if (doing_mpio && xfer_mode==H5FD_MPIO_COLLECTIVE)
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sconv_flags |= H5S_CONV_PAR_IO_POSSIBLE;
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} /* end if */
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/* Set the "parallel I/O possible" flag, for H5S_find(), if we are doing collective I/O */
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/* (Don't set the parallel I/O possible flag for the MPI-posix driver, since it doesn't do real collective I/O) */
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if (H5S_mpi_opt_types_g && xfer_mode==H5FD_MPIO_COLLECTIVE && !IS_H5FD_MPIPOSIX(dataset->ent.file))
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sconv_flags |= H5S_CONV_PAR_IO_POSSIBLE;
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#endif /*H5_HAVE_PARALLEL*/
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/* Make certain that the number of elements in each selection is the same */
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@ -858,12 +841,12 @@ H5D_write(H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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/* Determine correct I/O routine to invoke */
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if(dataset->layout.type!=H5D_CHUNKED) {
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if(H5D_contig_write(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, dc_plist,
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dx_plist, dxpl_id, doing_mpio, xfer_mode, src_id, dst_id, buf)<0)
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dx_plist, dxpl_id, xfer_mode, src_id, dst_id, buf)<0)
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HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data")
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} /* end if */
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else {
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if(H5D_chunk_write(nelmts, dataset, mem_type, mem_space, file_space, tpath, sconv, dc_plist,
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dx_plist, dxpl_id, doing_mpio, xfer_mode, src_id, dst_id, buf)<0)
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dx_plist, dxpl_id, xfer_mode, src_id, dst_id, buf)<0)
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HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data")
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} /* end else */
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@ -917,11 +900,7 @@ static herr_t
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H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
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const H5S_t *mem_space, const H5S_t *file_space, H5T_path_t *tpath,
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H5S_conv_t *sconv, H5P_genplist_t *dc_plist, H5P_genplist_t *dx_plist,
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hid_t dxpl_id, hbool_t
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#ifndef H5_HAVE_PARALLEL
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UNUSED
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#endif /*H5_HAVE_PARALLEL*/
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doing_mpio, H5FD_mpio_xfer_t
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hid_t dxpl_id, H5FD_mpio_xfer_t
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#ifndef H5_HAVE_PARALLEL
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UNUSED
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#endif /*H5_HAVE_PARALLEL*/
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@ -948,7 +927,7 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
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hsize_t smine_start; /*strip mine start loc */
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hsize_t n, smine_nelmts; /*elements per strip */
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#ifdef H5_HAVE_PARALLEL
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hbool_t xfer_mode_changed; /* Whether the transfer mode was changed */
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hbool_t xfer_mode_changed=FALSE; /* Whether the transfer mode was changed */
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#endif /*H5_HAVE_PARALLEL*/
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herr_t ret_value = SUCCEED; /*return value */
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@ -987,7 +966,7 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
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*/
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#ifdef H5_HAVE_PARALLEL
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H5D_io_assist_mpio(dx_plist, doing_mpio, xfer_mode, &xfer_mode_changed);
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H5D_io_assist_mpio(dx_plist, xfer_mode, &xfer_mode_changed);
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#endif /*H5_HAVE_PARALLEL*/
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/* Compute element sizes and other parameters */
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@ -1119,7 +1098,7 @@ H5D_contig_read(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type,
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done:
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#ifdef H5_HAVE_PARALLEL
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/* restore xfer_mode due to the kludge */
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if (doing_mpio && xfer_mode_changed) {
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if (xfer_mode_changed) {
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#ifdef H5D_DEBUG
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if (H5DEBUG(D))
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fprintf (H5DEBUG(D), "H5D: dx->xfer_mode was COLLECTIVE, restored to INDEPENDENT\n");
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@ -1173,11 +1152,7 @@ done:
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static herr_t
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H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, hbool_t
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#ifndef H5_HAVE_PARALLEL
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UNUSED
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#endif /*H5_HAVE_PARALLEL*/
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doing_mpio, H5FD_mpio_xfer_t
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H5P_genplist_t *dx_plist, hid_t dxpl_id, H5FD_mpio_xfer_t
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#ifndef H5_HAVE_PARALLEL
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UNUSED
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#endif /*H5_HAVE_PARALLEL*/
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@ -1204,7 +1179,7 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
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hsize_t smine_start; /*strip mine start loc */
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hsize_t n, smine_nelmts; /*elements per strip */
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#ifdef H5_HAVE_PARALLEL
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hbool_t xfer_mode_changed; /* Whether the transfer mode was changed */
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hbool_t xfer_mode_changed=FALSE; /* Whether the transfer mode was changed */
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#endif /*H5_HAVE_PARALLEL*/
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herr_t ret_value = SUCCEED; /*return value */
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@ -1240,7 +1215,7 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
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*/
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#ifdef H5_HAVE_PARALLEL
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H5D_io_assist_mpio(dx_plist, doing_mpio, xfer_mode, &xfer_mode_changed);
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H5D_io_assist_mpio(dx_plist, xfer_mode, &xfer_mode_changed);
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#endif /*H5_HAVE_PARALLEL*/
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/* Compute element sizes and other parameters */
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@ -1374,7 +1349,7 @@ H5D_contig_write(hsize_t nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5
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done:
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#ifdef H5_HAVE_PARALLEL
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/* restore xfer_mode due to the kludge */
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if (doing_mpio && xfer_mode_changed) {
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if (xfer_mode_changed) {
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#ifdef H5D_DEBUG
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if (H5DEBUG(D))
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fprintf (H5DEBUG(D), "H5D: dx->xfer_mode was COLLECTIVE, restored to INDEPENDENT\n");
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@ -1432,11 +1407,7 @@ UNUSED
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#endif /* NDEBUG */
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nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, hbool_t
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#ifndef H5_HAVE_PARALLEL
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UNUSED
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#endif /*H5_HAVE_PARALLEL*/
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doing_mpio, H5FD_mpio_xfer_t
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H5P_genplist_t *dx_plist, hid_t dxpl_id, H5FD_mpio_xfer_t
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#ifndef H5_HAVE_PARALLEL
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UNUSED
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#endif /*H5_HAVE_PARALLEL*/
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@ -1467,14 +1438,14 @@ UNUSED
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uint8_t *bkg_buf = NULL; /*background buffer */
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H5D_storage_t store; /*union of EFL and chunk pointer in file space */
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#ifdef H5_HAVE_PARALLEL
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hbool_t xfer_mode_changed; /* Whether the transfer mode was changed */
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hbool_t xfer_mode_changed=FALSE; /* Whether the transfer mode was changed */
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#endif /*H5_HAVE_PARALLEL*/
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herr_t ret_value = SUCCEED; /*return value */
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FUNC_ENTER_NOINIT(H5D_chunk_read)
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#ifdef H5_HAVE_PARALLEL
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H5D_io_assist_mpio(dx_plist, doing_mpio, xfer_mode, &xfer_mode_changed);
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H5D_io_assist_mpio(dx_plist, xfer_mode, &xfer_mode_changed);
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#endif /*H5_HAVE_PARALLEL*/
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/* Map elements between file and memory for each chunk*/
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@ -1711,7 +1682,7 @@ UNUSED
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done:
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#ifdef H5_HAVE_PARALLEL
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/* restore xfer_mode due to the kludge */
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if (doing_mpio && xfer_mode_changed) {
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if (xfer_mode_changed) {
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#ifdef H5D_DEBUG
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if (H5DEBUG(D))
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fprintf (H5DEBUG(D), "H5D: dx->xfer_mode was COLLECTIVE, restored to INDEPENDENT\n");
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@ -1774,11 +1745,7 @@ UNUSED
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#endif /* NDEBUG */
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nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
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const H5S_t *file_space, H5T_path_t *tpath, H5S_conv_t *sconv, H5P_genplist_t *dc_plist,
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H5P_genplist_t *dx_plist, hid_t dxpl_id, hbool_t
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#ifndef H5_HAVE_PARALLEL
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UNUSED
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#endif /*H5_HAVE_PARALLEL*/
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doing_mpio, H5FD_mpio_xfer_t
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H5P_genplist_t *dx_plist, hid_t dxpl_id, H5FD_mpio_xfer_t
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#ifndef H5_HAVE_PARALLEL
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||||
UNUSED
|
||||
#endif /*H5_HAVE_PARALLEL*/
|
||||
@ -1809,14 +1776,14 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
|
||||
uint8_t *bkg_buf = NULL; /*background buffer */
|
||||
H5D_storage_t store; /*union of EFL and chunk pointer in file space */
|
||||
#ifdef H5_HAVE_PARALLEL
|
||||
hbool_t xfer_mode_changed; /* Whether the transfer mode was changed */
|
||||
hbool_t xfer_mode_changed=FALSE; /* Whether the transfer mode was changed */
|
||||
#endif /*H5_HAVE_PARALLEL*/
|
||||
herr_t ret_value = SUCCEED; /*return value */
|
||||
|
||||
FUNC_ENTER_NOINIT(H5D_chunk_write)
|
||||
|
||||
#ifdef H5_HAVE_PARALLEL
|
||||
H5D_io_assist_mpio(dx_plist, doing_mpio, xfer_mode, &xfer_mode_changed);
|
||||
H5D_io_assist_mpio(dx_plist, xfer_mode, &xfer_mode_changed);
|
||||
#endif /*H5_HAVE_PARALLEL*/
|
||||
|
||||
#ifdef QAK
|
||||
@ -2096,7 +2063,7 @@ nelmts, H5D_t *dataset, const H5T_t *mem_type, const H5S_t *mem_space,
|
||||
done:
|
||||
#ifdef H5_HAVE_PARALLEL
|
||||
/* restore xfer_mode due to the kludge */
|
||||
if (doing_mpio && xfer_mode_changed) {
|
||||
if (xfer_mode_changed) {
|
||||
#ifdef H5D_DEBUG
|
||||
if (H5DEBUG(D))
|
||||
fprintf (H5DEBUG(D), "H5D: dx->xfer_mode was COLLECTIVE, restored to INDEPENDENT\n");
|
||||
@ -2154,7 +2121,7 @@ done:
|
||||
*-------------------------------------------------------------------------
|
||||
*/
|
||||
static herr_t
|
||||
H5D_io_assist_mpio(H5P_genplist_t *dx_plist, hbool_t doing_mpio, H5FD_mpio_xfer_t xfer_mode,
|
||||
H5D_io_assist_mpio(H5P_genplist_t *dx_plist, H5FD_mpio_xfer_t xfer_mode,
|
||||
hbool_t *xfer_mode_changed)
|
||||
{
|
||||
herr_t ret_value = SUCCEED; /*return value */
|
||||
@ -2166,7 +2133,7 @@ H5D_io_assist_mpio(H5P_genplist_t *dx_plist, hbool_t doing_mpio, H5FD_mpio_xfer_
|
||||
* request according to the MPI collective specification.
|
||||
* Do the collective request via independent mode.
|
||||
*/
|
||||
if (doing_mpio && xfer_mode==H5FD_MPIO_COLLECTIVE) {
|
||||
if (xfer_mode==H5FD_MPIO_COLLECTIVE) {
|
||||
/* Kludge: change the xfer_mode to independent, handle the request,
|
||||
* then xfer_mode before return.
|
||||
* Better way is to get a temporary data_xfer property with
|
||||
|
||||
Loading…
Reference in New Issue
Block a user