mirror/hdf5
2
0
Fork 0
mirror of https://github.com/HDFGroup/hdf5.git synced 2025-02-11 16:01:00 +08:00
Code Issues Packages Projects Releases Wiki Activity

[svn-r26911] svn merge -r26866:26910 https://svn.hdfgroup.uiuc.edu/hdf5/trunk

Browse Source
This commit is contained in:
Scot Breitenfeld 2015-04-23 15:21:04 -05:00
commit 35a297b461
7 changed files with 627 additions and 88 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

18
CMakeLists.txt
View File

@ -10,6 +10,24 @@ PROJECT (HDF5 C CXX)
# set CMAKE_INSTALL_PREFIX to the required install path.
# Make install can be used to install all components for system-wide use.
#
if ("${CMAKE_CURRENT_SOURCE_DIR}" STREQUAL "${CMAKE_CURRENT_BINARY_DIR}")
MESSAGE(FATAL_ERROR "\nERROR! ${PROJECT_NAME} DOES NOT SUPPORT IN SOURCE BUILDS!\n"
"CMAKE_CURRENT_SOURCE_DIR=${CMAKE_CURRENT_SOURCE_DIR}"
" == CMAKE_CURRENT_BINARY_DIR=${CMAKE_CURRENT_BINARY_DIR}\n"
"NEXT STEPS:\n"
"(1) Delete the CMakeCache.txt file and the CMakeFiles/ directory\n"
" under the source directory for ${PROJECT_NAME}, otherwise you\n"
" will not be able to configure ${PROJECT_NAME} correctly!\n"
" * For example, on linux machines do:\n"
" $ rm -r CMakeCache.txt CMakeFiles/\n"
"(2) Create a different directory and configure ${PROJECT_NAME} in that directory.\n"
" * For example, on linux machines do:\n"
" $ mkdir MY_BUILD\n"
" $ cd MY_BUILD\n"
" $ cmake [OPTIONS] ..\n"
)
endif ()
#-----------------------------------------------------------------------------
# Instructions for use : Sub-Project Build
#

4
MANIFEST
View File

@ -2480,3 +2480,7 @@
./tools/misc/CMakeTests.cmake
./tools/perform/CMakeLists.txt
./tools/perform/CMakeTests.cmake
# CMake-specific User Scripts
./config/cmake/scripts/CTestScript.cmake _DO_NOT_DISTRIBUTE_
./config/cmake/scripts/HDF518config.cmake _DO_NOT_DISTRIBUTE_

282
config/cmake/scripts/CTestScript.cmake Executable file
View File

@ -0,0 +1,282 @@
cmake_minimum_required(VERSION 3.1.0 FATAL_ERROR)
########################################################
# This dashboard is maintained by The HDF Group
# For any comments please contact cdashhelp@hdfgroup.org
#
########################################################
# -----------------------------------------------------------
# -- Get environment
# -----------------------------------------------------------
if(NOT SITE_OS_NAME)
## machine name not provided - attempt to discover with uname
## -- set hostname
## --------------------------
find_program(HOSTNAME_CMD NAMES hostname)
exec_program(${HOSTNAME_CMD} ARGS OUTPUT_VARIABLE HOSTNAME)
set(CTEST_SITE "${HOSTNAME}${CTEST_SITE_EXT}")
find_program(UNAME NAMES uname)
macro(getuname name flag)
exec_program("${UNAME}" ARGS "${flag}" OUTPUT_VARIABLE "${name}")
endmacro(getuname)
getuname(osname -s)
getuname(osrel -r)
getuname(cpu -m)
message(STATUS "Dashboard script uname output: ${osname}-${osrel}-${cpu}\n")
set(CTEST_BUILD_NAME "${osname}-${osrel}-${cpu}")
if(USE_AUTOTOOLS)
set(CTEST_BUILD_NAME "AT-${CTEST_BUILD_NAME}")
endif()
if(SITE_BUILDNAME_SUFFIX)
set(CTEST_BUILD_NAME "${CTEST_BUILD_NAME}-${SITE_BUILDNAME_SUFFIX}")
endif()
set(BUILD_OPTIONS "${ADD_BUILD_OPTIONS}")
else(NOT SITE_OS_NAME)
## machine name provided
## --------------------------
if(CMAKE_HOST_UNIX)
set(CTEST_BUILD_NAME "${SITE_OS_NAME}-${SITE_OS_VERSION}-${SITE_OS_BITS}-${SITE_COMPILER_NAME}-${SITE_COMPILER_VERSION}")
else()
set(CTEST_BUILD_NAME "${SITE_OS_NAME}-${SITE_OS_VERSION}-${SITE_COMPILER_NAME}")
endif()
if(SITE_BUILDNAME_SUFFIX)
set(CTEST_BUILD_NAME ${CTEST_BUILD_NAME}-${SITE_BUILDNAME_SUFFIX})
endif()
set(BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}")
endif(NOT SITE_OS_NAME)
#-----------------------------------------------------------------------------
# MAC machines need special option
#-----------------------------------------------------------------------------
if(APPLE)
# Compiler choice
execute_process(COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE)
execute_process(COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE)
set(ENV{CC} "${XCODE_CC}")
set(ENV{CXX} "${XCODE_CXX}")
set(BUILD_OPTIONS "${BUILD_OPTIONS} -DCTEST_USE_LAUNCHERS:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=OFF")
endif(APPLE)
#-----------------------------------------------------------------------------
set(NEED_REPOSITORY_CHECKOUT 0)
set(CTEST_CMAKE_COMMAND "\"${CMAKE_COMMAND}\"")
if(CTEST_USE_TAR_SOURCE)
## Uncompress source if tar file provided
## --------------------------
if(WIN32)
message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} x ${CTEST_USE_TAR_SOURCE}.zip]")
execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip RESULT_VARIABLE rv)
else()
message(STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_USE_TAR_SOURCE}.tar]")
execute_process(COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar RESULT_VARIABLE rv)
endif()
if(NOT rv EQUAL 0)
message(STATUS "extracting... [error-(${rv}) clean up]")
file(REMOVE_RECURSE "${CTEST_SOURCE_DIRECTORY}")
message(FATAL_ERROR "error: extract of ${CTEST_USE_TAR_SOURCE} failed")
endif()
file(RENAME ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE} ${CTEST_SOURCE_DIRECTORY})
else(CTEST_USE_TAR_SOURCE)
if(LOCAL_UPDATE)
if(CTEST_USE_GIT_SOURCE)
find_program(CTEST_GIT_COMMAND NAMES git git.cmd)
set(CTEST_GIT_UPDATE_OPTIONS)
if(NOT EXISTS "${CTEST_SOURCE_DIRECTORY}")
set(NEED_REPOSITORY_CHECKOUT 1)
endif()
if(${NEED_REPOSITORY_CHECKOUT})
if(REPOSITORY_BRANCH)
set(GITUpdateOptions "clone \"${REPOSITORY_URL}\" --branch \"${REPOSITORY_BRANCH}\" \"${CTEST_SOURCE_DIRECTORY}\" --recurse-submodules")
else()
set(GITUpdateOptions "clone \"${REPOSITORY_URL}\" \"${CTEST_SOURCE_DIRECTORY}\" --recurse-submodules")
endif()
set(CTEST_CHECKOUT_COMMAND "${CTEST_GIT_COMMAND} ${GITUpdateOptions}")
else()
set(GITUpdateOptions "pull")
endif()
set(CTEST_UPDATE_COMMAND "${CTEST_GIT_COMMAND}")
else(CTEST_USE_GIT_SOURCE)
## --------------------------
## use subversion to get source
#-----------------------------------------------------------------------------
## cygwin does not handle the find_package() call
## --------------------------
set(CTEST_UPDATE_COMMAND "SVNCommand")
if(NOT SITE_CYGWIN})
find_package (Subversion)
set(CTEST_SVN_COMMAND "${Subversion_SVN_EXECUTABLE}")
set(CTEST_UPDATE_COMMAND "${Subversion_SVN_EXECUTABLE}")
else()
set(CTEST_SVN_COMMAND "/usr/bin/svn")
set(CTEST_UPDATE_COMMAND "/usr/bin/svn")
endif()
if(NOT EXISTS "${CTEST_SOURCE_DIRECTORY}")
set(NEED_REPOSITORY_CHECKOUT 1)
endif()
if(NOT CTEST_REPO_VERSION)
set(CTEST_REPO_VERSION "HEAD")
endif()
if(${NEED_REPOSITORY_CHECKOUT})
set(CTEST_CHECKOUT_COMMAND
"${CTEST_SVN_COMMAND} co ${REPOSITORY_URL} \"${CTEST_SOURCE_DIRECTORY}\" -r ${CTEST_REPO_VERSION}")
else(${NEED_REPOSITORY_CHECKOUT})
if(CTEST_REPO_VERSION)
set(CTEST_SVN_UPDATE_OPTIONS "-r ${CTEST_REPO_VERSION}")
endif()
endif(${NEED_REPOSITORY_CHECKOUT})
endif(CTEST_USE_GIT_SOURCE)
endif(LOCAL_UPDATE)
endif(CTEST_USE_TAR_SOURCE)
#-----------------------------------------------------------------------------
## Clear the build directory
## --------------------------
set(CTEST_START_WITH_EMPTY_BINARY_DIRECTORY TRUE)
if(NOT EXISTS "${CTEST_BINARY_DIRECTORY}")
file(MAKE_DIRECTORY "${CTEST_BINARY_DIRECTORY}")
else()
ctest_empty_binary_directory(${CTEST_BINARY_DIRECTORY})
endif()
# Use multiple CPU cores to build
include(ProcessorCount)
ProcessorCount(N)
if(NOT N EQUAL 0)
if(NOT WIN32)
set(CTEST_BUILD_FLAGS -j${N})
endif()
set(ctest_test_args ${ctest_test_args} PARALLEL_LEVEL ${N})
endif()
#-----------------------------------------------------------------------------
# Send the main script as a note.
list(APPEND CTEST_NOTES_FILES
"${CTEST_SCRIPT_DIRECTORY}/${CTEST_SCRIPT_NAME}"
"${CMAKE_CURRENT_LIST_FILE}"
"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake"
)
#-----------------------------------------------------------------------------
# Check for required variables.
# --------------------------
foreach(req
CTEST_CMAKE_GENERATOR
CTEST_SITE
CTEST_BUILD_NAME
)
if(NOT DEFINED ${req})
message(FATAL_ERROR "The containing script must set ${req}")
endif()
endforeach(req)
#-----------------------------------------------------------------------------
# Initialize the CTEST commands
#------------------------------
if(LOCAL_MEMCHECK_TEST)
find_program(CTEST_MEMORYCHECK_COMMAND NAMES valgrind)
set (CTEST_CONFIGURE_COMMAND
"${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/mccacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_BUILD_CONFIGURATION} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\""
)
else()
if(LOCAL_COVERAGE_TEST)
find_program(CTEST_COVERAGE_COMMAND NAMES gcov)
endif()
set (CTEST_CONFIGURE_COMMAND
"${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_BUILD_CONFIGURATION} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_SOURCE_DIRECTORY}\""
)
endif()
#-----------------------------------------------------------------------------
## -- set output to english
set($ENV{LC_MESSAGES} "en_EN")
# Print summary information.
foreach(v
CTEST_SITE
CTEST_BUILD_NAME
CTEST_SOURCE_DIRECTORY
CTEST_BINARY_DIRECTORY
CTEST_CMAKE_GENERATOR
CTEST_BUILD_CONFIGURATION
CTEST_GIT_COMMAND
CTEST_CHECKOUT_COMMAND
CTEST_CONFIGURE_COMMAND
CTEST_SCRIPT_DIRECTORY
CTEST_USE_LAUNCHERS
)
set(vars "${vars} ${v}=[${${v}}]\n")
endforeach(v)
message(STATUS "Dashboard script configuration:\n${vars}\n")
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
## NORMAL process
## -- LOCAL_UPDATE updates the source folder from svn
## -- LOCAL_SUBMIT reports to CDash server
## -- LOCAL_SKIP_TEST skips the test process (only builds)
## -- LOCAL_MEMCHECK_TEST executes the Valgrind testing
## -- LOCAL_COVERAGE_TEST executes code coverage process
## --------------------------
ctest_start (${MODEL} TRACK ${MODEL})
if(LOCAL_UPDATE)
ctest_update (SOURCE "${CTEST_SOURCE_DIRECTORY}")
endif()
configure_file(${CTEST_SOURCE_DIRECTORY}/config/cmake/CTestCustom.cmake ${CTEST_BINARY_DIRECTORY}/CTestCustom.cmake)
ctest_read_custom_files ("${CTEST_BINARY_DIRECTORY}")
ctest_configure (BUILD "${CTEST_BINARY_DIRECTORY}")
if(LOCAL_SUBMIT)
ctest_submit (PARTS Update Configure Notes)
endif()
ctest_build (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)
if(LOCAL_SUBMIT)
ctest_submit (PARTS Build)
endif()
if(NOT LOCAL_SKIP_TEST)
if(NOT LOCAL_MEMCHECK_TEST)
ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res)
if(LOCAL_SUBMIT)
ctest_submit (PARTS Test)
endif()
if(res GREATER 0)
message(FATAL_ERROR "Failed tests: ${res}\n")
endif()
else()
ctest_memcheck (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args})
if(LOCAL_SUBMIT)
ctest_submit (PARTS MemCheck)
endif(LOCAL_SUBMIT)
endif()
if(LOCAL_COVERAGE_TEST)
ctest_coverage (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)
if(LOCAL_SUBMIT)
ctest_submit (PARTS Coverage)
endif()
endif()
endif(NOT LOCAL_SKIP_TEST)
if(NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE)
##-----------------------------------------------
## Package the product
##-----------------------------------------------
execute_process(COMMAND cpack -C ${CTEST_BUILD_CONFIGURATION} -V
WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
RESULT_VARIABLE cpackResult
OUTPUT_VARIABLE cpackLog
ERROR_VARIABLE cpackLog.err
)
file(WRITE ${CTEST_BINARY_DIRECTORY}/cpack.log "${cpackLog.err}" "${cpackLog}")
if(cpackResult GREATER 0)
message (FATAL_ERROR "Failed packaging: ${cpackResult}\n")
endif()
endif(NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE)
#-----------------------------------------------------------------------------

160
config/cmake/scripts/HDF518config.cmake Executable file
View File

@ -0,0 +1,160 @@
#########################################################################
### For Windows ${CTEST_SCRIPT_ARG} is one of ###
### [64-VS2013, 32-VS2013, 64-VS2012, 32-VS2012] ###
### ctest -S HDF518config.cmake,32-VS2012 -C Release -V -O hdf518.log ###
#########################################################################
cmake_minimum_required(VERSION 3.1.0 FATAL_ERROR)
set(CTEST_SOURCE_VERSION 1.8.15-pre4)
set(CTEST_SOURCE_NAME hdf5-${CTEST_SOURCE_VERSION})
set(CTEST_BINARY_NAME "build")
set(CTEST_DASHBOARD_ROOT "${CTEST_SCRIPT_DIRECTORY}")
if(WIN32)
set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_SOURCE_NAME}")
set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_BINARY_NAME}")
else()
set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_SOURCE_NAME}")
set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_BINARY_NAME}")
endif()
###################################################################
### Following Line is one of [Release, RelWithDebInfo, Debug] #####
set(CTEST_BUILD_CONFIGURATION "Release")
###################################################################
###################################################################
######### Following describes compiler ############
if(WIN32)
set(SITE_OS_NAME "Windows")
set(SITE_OS_VERSION "WIN7")
if(${CTEST_SCRIPT_ARG} STREQUAL "64-VS2013")
set(CTEST_CMAKE_GENERATOR "Visual Studio 12 2013 Win64")
set(SITE_OS_BITS "64")
set(SITE_COMPILER_NAME "vs2013")
set(SITE_COMPILER_VERSION "12")
elseif(${CTEST_SCRIPT_ARG} STREQUAL "32-VS2013")
set(CTEST_CMAKE_GENERATOR "Visual Studio 12 2013")
set(SITE_OS_BITS "32")
set(SITE_COMPILER_NAME "vs2013")
set(SITE_COMPILER_VERSION "12")
elseif(${CTEST_SCRIPT_ARG} STREQUAL "64-VS2012")
set(CTEST_CMAKE_GENERATOR "Visual Studio 11 2012 Win64")
set(SITE_OS_BITS "64")
set(SITE_COMPILER_NAME "vs2012")
set(SITE_COMPILER_VERSION "11")
elseif(${CTEST_SCRIPT_ARG} STREQUAL "32-VS2012")
set(CTEST_CMAKE_GENERATOR "Visual Studio 11 2012")
set(SITE_OS_BITS "32")
set(SITE_COMPILER_NAME "vs2012")
set(SITE_COMPILER_VERSION "11")
endif()
## Set the following to unique id your computer ##
set(CTEST_SITE "WIN7${CTEST_SCRIPT_ARG}.XXXX")
else()
set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
## Set the following to unique id your computer ##
if(APPLE)
set(CTEST_SITE "MAC.XXXX")
else()
set(CTEST_SITE "LINUX.XXXX")
endif()
endif()
###################################################################
###################################################################
######### Following is for submission to CDash ############
###################################################################
set(MODEL "Experimental")
######### Following describes computer ############
## following is optional to describe build ##
set(SITE_BUILDNAME_SUFFIX "STATIC")
###################################################################
###################################################################
##### Following controls CDash submission #####
#set(LOCAL_SUBMIT "TRUE")
##### Following controls test process #####
#set(LOCAL_SKIP_TEST "TRUE")
#set(LOCAL_MEMCHECK_TEST "TRUE")
#set(LOCAL_COVERAGE_TEST "TRUE")
##### Following controls cpack command #####
#set(LOCAL_NO_PACKAGE "TRUE")
##### Following controls source update #####
#set(LOCAL_UPDATE "TRUE")
set(REPOSITORY_URL "http://svn.hdfgroup.uiuc.edu/hdf5/branches/hdf5_1_8")
#uncomment to use a compressed source file: *.tar on linux or mac *.zip on windows
#set(CTEST_USE_TAR_SOURCE "${CTEST_SOURCE_VERSION}")
###################################################################
###################################################################
#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")
### uncomment/comment and change the following lines for configuration options
### comment the following line or change OFF to ON in order to build shared libraries
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")
#### ext libraries ####
### ext libs from tgz
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
### ext libs from svn
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=SVN")
### ext libs on system
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
### disable ext libs building
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
#### fortran ####
### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=ON")
### disable Fortran; change OFF to ON in order to build FORTRAN libraries
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
### disable test program builds
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
### disable packaging
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
### Create install package with external libraries (szip, zlib, jpeg)
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
### change install prefix
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=install")
###################################################################
if(WIN32)
include(${CTEST_SCRIPT_DIRECTORY}\\CTestScript.cmake)
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.exe")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.exe" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.msi")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.msi" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.zip")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.zip" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
else()
include(${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake)
if(APPLE)
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.dmg")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.dmg" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.tar.gz")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.sh")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
else()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Linux.sh")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Linux.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Linux.tar.gz")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Linux.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
endif()
endif()

213
release_docs/INSTALL_CMake.txt
View File

@ -26,7 +26,7 @@ Obtaining HDF5 source code
2. Obtain compressed (*.tar or *.zip) HDF5 source from
http://www.hdfgroup.org/ftp/HDF5/current/src/
and put it in "myhdfstuff".
Do not uncompress.
Uncompress the file.
CMake version
1. We suggest you obtain the latest CMake from the Kitware web site.
@ -54,10 +54,7 @@ External compression szip and zlib libraries:
ZLib.tar.gz
Platform configuration files:
HDF518Windows64CMake.cmake
HDF518Windows32CMake.cmake
HDF518LinuxCMake.cmake
HDF518MacCMake.cmake
HDF518config.cmake
To build HDF5 with the SZIP and ZLIB external libraries you will need to:
@ -69,14 +66,23 @@ To build HDF5 with the SZIP and ZLIB external libraries you will need to:
3. Download the CTestScript.cmake file to "myhdfstuff".
CTestScript.cmake file should not be modified.
4. Download a platform configuration file to "myhdfstuff".
4. Download the platform configuration file to "myhdfstuff".
Do not modify the file unless you want to change default build
environment.
5. From the "myhdfstuff" directory execute the CTest Script with the
following options:
ctest -S <configuration file> -C Release -VV -O hdf5.log
On 32-bit Windows with Visual Studio 2012, execute:
ctest -S HDF518config.cmake,32-VS2012 -C Release -VV -O hdf5.log
On 64-bit Windows with Visual Studio 2012, execute:
ctest -S HDF518config.cmake,64-VS2012 -C Release -VV -O hdf5.log
On 32-bit Windows with Visual Studio 2013, execute:
ctest -S HDF518config.cmake,32-VS2012 -C Release -VV -O hdf5.log
On 64-bit Windows with Visual Studio 2013, execute:
ctest -S HDF518config.cmake,64-VS2012 -C Release -VV -O hdf5.log
On Linux and Mac, execute:
ctest -S HDF518config.cmake -C Release -VV -O hdf5.log
The command above will configure, build, test, and create an install
package in the myhdfstuff/hdf5-1.8/build folder.
@ -94,7 +100,7 @@ To build HDF5 with the SZIP and ZLIB external libraries you will need to:
6. To install, "X" is the current release version
On Windows, execute:
HDF5-1.8."X"-win32.exe or HDF5-1.8."X"-win64.exe
HDF5-1.8."X"-win32.msi or HDF5-1.8."X"-win64.msi
By default this program will install the hdf5 library into the
"C:\Program Files" directory and will create the following
directory structure:
@ -180,7 +186,7 @@ Notes: This short set of instructions is written for users who want to
9. To install
On Windows, execute:
HDF5-1.8."X"-win32.exe or HDF5-1.8."X"-win64.exe
HDF5-1.8."X"-win32.msi or HDF5-1.8."X"-win64.msi
By default this program will install the hdf5 library into the
"C:\Program Files" directory and will create the following
directory structure:
@ -376,12 +382,8 @@ These five steps are described in detail below.
set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries" FORCE)
set (BUILD_TESTING ON CACHE BOOL "Build HDF5 Unit Testing" FORCE)
set (HDF_PACKAGE_EXT "" CACHE STRING "Name of HDF package extension" FORCE)
set (HDF5_BUILD_CPP_LIB ON CACHE BOOL "Build HDF5 C++ Library" FORCE)
set (HDF5_BUILD_EXAMPLES ON CACHE BOOL "Build HDF5 Library Examples" FORCE)
set (HDF5_BUILD_FORTRAN ON CACHE BOOL "Build FORTRAN support" FORCE)
set (HDF5_ENABLE_F2003 ON CACHE BOOL "Enable FORTRAN 2003 Standard" FORCE)
set (HDF5_BUILD_HL_LIB ON CACHE BOOL "Build HIGH Level HDF5 Library" FORCE)
set (HDF5_BUILD_TOOLS ON CACHE BOOL "Build HDF5 Tools" FORCE)
set (HDF5_BUILD_GENERATORS OFF CACHE BOOL "Build Test Generators" FORCE)
set (HDF5_ENABLE_Z_LIB_SUPPORT ON CACHE BOOL "Enable Zlib Filters" FORCE)
set (HDF5_ENABLE_SZIP_SUPPORT ON CACHE BOOL "Use SZip Filter" FORCE)
@ -498,7 +500,7 @@ These five steps are described in detail below.
5. Packaging HDF5 (create an install image)
To package the build into a simple installer using the NullSoft installer NSIS
To package the build into a simple installer using WiX toolset or the NullSoft installer NSIS
on Windows, or into compressed files (.tar.gz, .sh, .zip), use the CPack tool.
To package the build, navigate to your build directory and execute;
@ -506,6 +508,7 @@ These five steps are described in detail below.
cpack -C {Debug | Release} CPackConfig.cmake
NOTE: See note 8 of this document for NSIS information.
See note 9 of this document for WiX information.
Also, if you are using a Visual Studio Express version or do not
want to enable the packaging components, set HDF5_NO_PACKAGES
to ON (on the command line add -DHDF5_NO_PACKAGES:BOOL=ON)
@ -529,6 +532,9 @@ These five steps are described in detail below.
"output directory", which is where the program will be installed. These
options are case-sensitive, so be sure to type them in upper case.
9. WiX Toolset
WiX--the Windows Installer XML toolset--lets developers create installers for
Windows Installer, the Windows installation engine. See http://wixtoolset.org.
========================================================================
@ -615,37 +621,31 @@ build and test process.
VIII. Options for Platform Configuration Files
========================================================================
Below is the HDF518LinuxCmake.cmake ctest script with extra comments.
The example is for a linux machine, but the same scripts can be used on
a Windows machine by adjusting the CTEST_CMAKE_GENERATOR option in the
platform configuration script.
Below is the HDF518config.cmake ctest script with extra comments.
Execute:
ctest -S HDF518config.cmake -C Release -V -O hdf518.log
The same scripts can be used on Linux, Mac OSX or a Windows machine by
adding an option (${CTEST_SCRIPT_ARG}) to the platform configuration script.
############################################################################
# Product specific script, HDF518LinuxCmake.cmake, that uses the
# CTestScript.cmake file. Usage:
# "ctest -S HDF518LinuxCmake.cmake -C Release -O hdf518shared.log"
############################################################################
#########################################################################
### For Windows ${CTEST_SCRIPT_ARG} is one of ###
### [64-VS2013, 32-VS2013, 64-VS2012, 32-VS2012] ###
### ctest -S HDF518config.cmake,32-VS2012 -C Release -V -O hdf518.log ###
#########################################################################
cmake_minimum_required(VERSION 3.1.0 FATAL_ERROR)
# this is the location of the source hardcoded to hdf5-1.8.13
set(CTEST_SOURCE_NAME hdf5-1.8.13)
# this is the location of the source with ctest parameter hdf5src
# "ctest -S HDF518LinuxCmake.cmake,hdf5src -C Release -O hdf518static.log"
#set(CTEST_SOURCE_NAME ${CTEST_SCRIPT_ARG})
# this is the location of the build directory
set(CTEST_BINARY_NAME ${CTEST_SOURCE_NAME}/build)
# this is the directory the script is executed from
set(CTEST_SOURCE_VERSION 1.8.X)
set(CTEST_SOURCE_NAME hdf5-${CTEST_SOURCE_VERSION})
set(CTEST_BINARY_NAME "build")
set(CTEST_DASHBOARD_ROOT "${CTEST_SCRIPT_DIRECTORY}")
# this is the full path of the source directory
set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_SOURCE_NAME}")
# this is the full path of the build directory
set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_BINARY_NAME}")
if(WIN32)
set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_SOURCE_NAME}")
set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_BINARY_NAME}")
else()
set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_SOURCE_NAME}")
set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_BINARY_NAME}")
endif()
###################################################################
### Following Line is one of [Release, RelWithDebInfo, Debug] #####
@ -654,13 +654,41 @@ set(CTEST_BUILD_CONFIGURATION "Release")
###################################################################
######### Following describes compiler ############
# this is for linux
set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
# this is for windows 32 bit
#set(CTEST_CMAKE_GENERATOR "Visual Studio 11")
# this is for windows 64 bit
#set(CTEST_CMAKE_GENERATOR "Visual Studio 11 Win64")
# Visual Studio 2013 is 12, Visual Studio 2012 is 11, Visual Studio 2010 is 10
if(WIN32)
set(SITE_OS_NAME "Windows")
set(SITE_OS_VERSION "WIN7")
if(${CTEST_SCRIPT_ARG} STREQUAL "64-VS2013")
set(CTEST_CMAKE_GENERATOR "Visual Studio 12 2013 Win64")
set(SITE_OS_BITS "64")
set(SITE_COMPILER_NAME "vs2013")
set(SITE_COMPILER_VERSION "12")
elseif(${CTEST_SCRIPT_ARG} STREQUAL "32-VS2013")
set(CTEST_CMAKE_GENERATOR "Visual Studio 12 2013")
set(SITE_OS_BITS "32")
set(SITE_COMPILER_NAME "vs2013")
set(SITE_COMPILER_VERSION "12")
elseif(${CTEST_SCRIPT_ARG} STREQUAL "64-VS2012")
set(CTEST_CMAKE_GENERATOR "Visual Studio 11 2012 Win64")
set(SITE_OS_BITS "64")
set(SITE_COMPILER_NAME "vs2012")
set(SITE_COMPILER_VERSION "11")
elseif(${CTEST_SCRIPT_ARG} STREQUAL "32-VS2012")
set(CTEST_CMAKE_GENERATOR "Visual Studio 11 2012")
set(SITE_OS_BITS "32")
set(SITE_COMPILER_NAME "vs2012")
set(SITE_COMPILER_VERSION "11")
endif()
## Set the following to unique id your computer ##
set(CTEST_SITE "WIN7${CTEST_SCRIPT_ARG}.XXXX")
else()
set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
## Set the following to unique id your computer ##
if(APPLE)
set(CTEST_SITE "MAC.XXXX")
else()
set(CTEST_SITE "LINUX.XXXX")
endif()
endif()
###################################################################
###################################################################
@ -668,25 +696,24 @@ set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
###################################################################
set(MODEL "Experimental")
######### Following describes computer ############
## Set the following to unique id your computer ##
set(CTEST_SITE "LINUX.XXXX")
## following is optional to describe build ##
set(SITE_BUILDNAME_SUFFIX "SHARED")
## following is optional to describe build ##
set(SITE_BUILDNAME_SUFFIX "STATIC")
###################################################################
######### Following controls CDash submission ##########
###################################################################
##### Following controls CDash submission #####
#set(LOCAL_SUBMIT "TRUE")
######### Following controls test process ##########
##### Following controls test process #####
#set(LOCAL_SKIP_TEST "TRUE")
#set(LOCAL_MEMCHECK_TEST "TRUE")
#set(LOCAL_COVERAGE_TEST "TRUE")
######### Following controls cpack command ##########
##### Following controls cpack command #####
#set(LOCAL_NO_PACKAGE "TRUE")
######### Following controls source update ##########
##### Following controls source update #####
#set(LOCAL_UPDATE "TRUE")
######### Following controls source repository ##########
#set(REPOSITORY_URL "http://svn.${hdfgroup_url}/hdf5/branches/hdf5_1_8")
#comment to use a uncompressed source folder
set(CTEST_USE_TAR_SOURCE "hdf5-1.8.13")
set(REPOSITORY_URL "http://svn.hdfgroup.uiuc.edu/hdf5/branches/hdf5_1_8")
#uncomment to use a compressed source file: *.tar on linux or mac *.zip on windows
#set(CTEST_USE_TAR_SOURCE "${CTEST_SOURCE_VERSION}")
###################################################################
###################################################################
@ -695,8 +722,8 @@ set(CTEST_USE_TAR_SOURCE "hdf5-1.8.13")
### uncomment/comment and change the following lines for configuration options
### uncomment the following line to build static libraries
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")
### comment the following line or change OFF to ON in order to build shared libraries
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_SHARED_LIBS:BOOL=OFF")
#### ext libraries ####
### ext libs from tgz
@ -706,33 +733,65 @@ set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING
### ext libs on system
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
### disable ext libs building
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
#### fortran ####
### disable Fortran 2003
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=OFF")
### disable Fortran
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
### Create install package with external libraries (szip, zlib)
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=ON")
### disable Fortran; change OFF to ON in order to build FORTRAN libraries
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
if(APPLE)
### allow shared builds without fortran on MAC
set(NO_MAC_FORTRAN "TRUE")
endif()
### disable test program builds
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
### disable packaging
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
### disable building examples
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_EXAMPLES:BOOL=OFF")
### disable building tests
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
### Create install package with external libraries (szip, zlib, jpeg)
set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
### change install prefix
#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=install")
###################################################################
include(${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake)
if(WIN32)
include(${CTEST_SCRIPT_DIRECTORY}\\CTestScript.cmake)
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.exe")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.exe" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.msi")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.msi" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.zip")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-win${SITE_OS_BITS}.zip" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
else()
include(${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake)
if(APPLE)
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.dmg")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.dmg" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.tar.gz")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.sh")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Darwin.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
else()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Linux.sh")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Linux.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
if(EXISTS "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Linux.tar.gz")
file(COPY "${CTEST_BINARY_DIRECTORY}\\HDF5-${CTEST_SOURCE_VERSION}-Linux.tar.gz" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
endif()
endif()
endif()
========================================================================

4
release_docs/USING_HDF5_CMake.txt
View File

@ -107,7 +107,7 @@ These steps are described in more detail below.
<options> is:
* BUILD_TESTING:BOOL=ON
* USE_SHARED_LIBS:BOOL=[ON | OFF]
* BUILD_SHARED_LIBS:BOOL=[ON | OFF]
2. Configure the cache settings
@ -131,7 +131,7 @@ These steps are described in more detail below.
2.2 Alternative command line example on Windows in c:\MyHDFstuff\hdf5\build directory:
cmake -G "Visual Studio 11" -DBUILD_TESTING:BOOL=ON -DUSE_SHARED_LIBS:BOOL=ON ..
cmake -G "Visual Studio 11" -DBUILD_TESTING:BOOL=ON ..
3. Build HDF5 Applications

34
src/H5T.c
View File

@ -3208,7 +3208,7 @@ H5T_copy(H5T_t *old_dt, H5T_copy_t method)
switch(new_dt->shared->type) {
case H5T_COMPOUND:
{
int accum_change = 0; /* Amount of change in the offset of the fields */
ssize_t accum_change = 0; /* Amount of change in the offset of the fields */
/*
* Copy all member fields to new type, then overwrite the
@ -3236,6 +3236,10 @@ H5T_copy(H5T_t *old_dt, H5T_copy_t method)
new_dt->shared->u.compnd.memb[i].type = tmp;
HDassert(tmp != NULL);
/* Range check against compound member's offset */
if ((accum_change < 0) && ((ssize_t) new_dt->shared->u.compnd.memb[i].offset < accum_change))
HGOTO_ERROR(H5E_DATATYPE, H5E_BADVALUE, NULL, "invalid field size in datatype");
/* Apply the accumulated size change to the offset of the field */
new_dt->shared->u.compnd.memb[i].offset += (size_t) accum_change;
@ -3259,14 +3263,16 @@ H5T_copy(H5T_t *old_dt, H5T_copy_t method)
/* Adjust the size of the member */
new_dt->shared->u.compnd.memb[i].size = (old_dt->shared->u.compnd.memb[old_match].size*tmp->shared->size)/old_dt->shared->u.compnd.memb[old_match].type->shared->size;
accum_change += (int) (new_dt->shared->u.compnd.memb[i].type->shared->size - old_dt->shared->u.compnd.memb[old_match].type->shared->size);
HDassert(accum_change >= 0);
accum_change += (ssize_t) (new_dt->shared->u.compnd.memb[i].type->shared->size - old_dt->shared->u.compnd.memb[old_match].type->shared->size);
} /* end if */
} /* end for */
/* Range check against datatype size */
if ((accum_change < 0) && ((ssize_t) new_dt->shared->size < accum_change))
HGOTO_ERROR(H5E_DATATYPE, H5E_BADVALUE, NULL, "invalid field size in datatype");
/* Apply the accumulated size change to the size of the compound struct */
new_dt->shared->size += (size_t) accum_change;
}
break;
@ -5106,7 +5112,6 @@ H5T_set_loc(H5T_t *dt, H5F_t *f, H5T_loc_t loc)
htri_t changed; /* Whether H5T_set_loc changed the type (even if the size didn't change) */
htri_t ret_value = 0; /* Indicate that success, but no location change */
unsigned i; /* Local index variable */
int accum_change; /* Amount of change in the offset of the fields */
size_t old_size; /* Previous size of a field */
FUNC_ENTER_NOAPI(FAIL)
@ -5140,12 +5145,19 @@ H5T_set_loc(H5T_t *dt, H5F_t *f, H5T_loc_t loc)
break;
case H5T_COMPOUND: /* Check each field and recurse on VL, compound and array type */
{
ssize_t accum_change = 0; /* Amount of change in the offset of the fields */
/* Sort the fields based on offsets */
H5T__sort_value(dt, NULL);
for (i=0,accum_change=0; i<dt->shared->u.compnd.nmembs; i++) {
for (i=0; i<dt->shared->u.compnd.nmembs; i++) {
H5T_t *memb_type; /* Member's datatype pointer */
/* Range check against compound member's offset */
if ((accum_change < 0) && ((ssize_t) dt->shared->u.compnd.memb[i].offset < accum_change))
HGOTO_ERROR(H5E_DATATYPE, H5E_BADVALUE, FAIL, "invalid field size in datatype");
/* Apply the accumulated size change to the offset of the field */
dt->shared->u.compnd.memb[i].offset += (size_t) accum_change;
@ -5170,14 +5182,18 @@ H5T_set_loc(H5T_t *dt, H5F_t *f, H5T_loc_t loc)
dt->shared->u.compnd.memb[i].size = (dt->shared->u.compnd.memb[i].size*memb_type->shared->size)/old_size;
/* Add that change to the accumulated size change */
accum_change += (int) (memb_type->shared->size - old_size);
HDassert(accum_change >= 0);
accum_change += (ssize_t) (memb_type->shared->size - old_size);
} /* end if */
} /* end if */
} /* end for */
/* Range check against datatype size */
if ((accum_change < 0) && ((ssize_t) dt->shared->size < accum_change))
HGOTO_ERROR(H5E_DATATYPE, H5E_BADVALUE, FAIL, "invalid field size in datatype");
/* Apply the accumulated size change to the datatype */
dt->shared->size = dt->shared->size + (size_t) accum_change;
dt->shared->size += (size_t) accum_change;
}
break;
case H5T_VLEN: /* Recurse on the VL information if it's VL, compound or array, then free VL sequence */