mirror/hdf5
2
0
Fork 0
mirror of https://github.com/HDFGroup/hdf5.git synced 2025-03-31 17:10:47 +08:00
Code Issues Packages Projects Releases Wiki Activity

[svn-r14549] Added more tests. Test both H5Sselect_elements and H5Sselect_hyperslab, for both chunked and

Browse Source 
contiguous datasets.

Tested on smirom, kagiso, and linew.
This commit is contained in:
Raymond Lu 2008-02-11 15:13:23 -05:00
parent 349702f97d
commit 31e6484930
1 changed files with 249 additions and 41 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

290
test/tcoords.c
View File

@ -29,21 +29,31 @@
#define FILENAME "coord.h5"
#define SINGLE_END_DSET "single_end_dset"
#define MULTI_ENDS_SEL_HYPER_DSET "multiple_ends_dset"
#define NAME_LEN 128
/* Data written to the dataset for single block test. Global variable
* for convenience. */
int da_buffer[2][3][6][2];
/***********************************************************
**
** test_single_end(): Test full hyperslab selection of only
** test_singleEnd_selElements(): Test element selection of only
** one block.
**
*************************************************************/
static void test_single_end(hid_t file)
static void test_singleEnd_selElements(hid_t file, hbool_t is_chunked)
{
hid_t sid, plid, did, msid;
char dset_name[NAME_LEN]; /* Dataset name */
size_t elmts_numb;
herr_t ret; /* Generic error return */
int i, j, k;
hsize_t da_dims[4] = { 2, 3, 6, 2 };
hsize_t da_chunksize[4] = { 1, 3, 3, 2 };
int da_buffer[2][3][6][2];
/* For testing the full selection in the fastest-growing end */
int mem1_buffer[1][1][6][2];
hsize_t mem1_dims[4] = { 1, 1, 6, 2 };
@ -73,10 +83,24 @@ static void test_single_end(hid_t file)
/* For testing the full selection in the middle dimensions */
int mem3_buffer[1][3][6][1];
hsize_t mem3_dims[4] = { 1, 3, 6, 1 };
hsize_t mem3_start[4] = { 0, 0, 0, 0 };
hsize_t mem3_count[4] = { 1, 1, 1, 1 };
hsize_t mem3_stride[4] = { 1, 1, 1, 1 };
hsize_t mem3_block[4] = { 1, 3, 6, 1 };
hsize_t da_elmts3[18][4] = { {0, 0, 0, 0},
{0, 0, 1, 0},
{0, 0, 2, 0},
{0, 0, 3, 0},
{0, 0, 4, 0},
{0, 0, 5, 0},
{0, 1, 0, 0},
{0, 1, 1, 0},
{0, 1, 2, 0},
{0, 1, 3, 0},
{0, 1, 4, 0},
{0, 1, 5, 0},
{0, 2, 0, 0},
{0, 2, 1, 0},
{0, 2, 2, 0},
{0, 2, 3, 0},
{0, 2, 4, 0},
{0, 2, 5, 0} };
/* Create and write the dataset */
sid = H5Screate_simple(4, da_dims, da_dims);
@ -85,17 +109,26 @@ static void test_single_end(hid_t file)
plid = H5Pcreate(H5P_DATASET_CREATE);
CHECK(plid, FAIL, "H5Pcreate");
ret = H5Pset_chunk(plid, 4, da_chunksize);
CHECK(ret, FAIL, "H5Pset_chunk");
if(is_chunked) {
ret = H5Pset_chunk(plid, 4, da_chunksize);
CHECK(ret, FAIL, "H5Pset_chunk");
}
did = H5Dcreate2(file, "single_end", H5T_NATIVE_INT, sid, H5P_DEFAULT, plid, H5P_DEFAULT);
/* Construct dataset's name */
memset(dset_name, 0, (size_t)NAME_LEN);
strcat(dset_name, SINGLE_END_DSET);
if(is_chunked)
strcat(dset_name, "_chunked");
did = H5Dcreate2(file, dset_name, H5T_NATIVE_INT, sid, H5P_DEFAULT, plid, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dcreate2");
/* Initialize the data to be written to file */
for(i=0; i<2; i++) {
for(j=0; j<3; j++) {
for(k=0; k<6; k++) {
da_buffer[i][j][k][0] = i*100 + j*10 + k;
da_buffer[i][j][k][0] = i*100 + j*10 + k + 1;
da_buffer[i][j][k][1] = i*100 + j*10 + k + 1;
}
}
}
@ -109,13 +142,16 @@ static void test_single_end(hid_t file)
/* ****** Case 1: ******
* Testing the full selection in the fastest-growing end */
did = H5Dopen2(file, "single_end", H5P_DEFAULT);
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
ret = H5Sselect_elements(sid, H5S_SELECT_SET, 12, da_elmts1);
elmts_numb = 12;
ret = H5Sselect_elements(sid, H5S_SELECT_SET, elmts_numb, da_elmts1);
CHECK(ret, FAIL, "H5Sselect_elements");
/* Dataspace for memory buffer */
msid = H5Screate_simple(4, mem1_dims, mem1_dims);
CHECK(msid, FAIL, "H5Screate_simple");
@ -139,13 +175,16 @@ static void test_single_end(hid_t file)
/* ****** Case 2: ******
* Testing the full selection in the slowest-growing end */
did = H5Dopen2(file, "single_end", H5P_DEFAULT);
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
ret = H5Sselect_elements(sid, H5S_SELECT_SET, 6, da_elmts2);
elmts_numb = 6;
ret = H5Sselect_elements(sid, H5S_SELECT_SET, elmts_numb, da_elmts2);
CHECK(ret, FAIL, "H5Sselect_elements");
/* Dataspace for memory buffer */
msid = H5Screate_simple(4, mem2_dims, mem2_dims);
CHECK(msid, FAIL, "H5Screate_simple");
@ -169,13 +208,16 @@ static void test_single_end(hid_t file)
/* ****** Case 3: ******
* Testing the full selection in the middle dimensions */
did = H5Dopen2(file, "single_end", H5P_DEFAULT);
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, mem3_start, mem3_stride, mem3_count, mem3_block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
elmts_numb = 18;
ret = H5Sselect_elements(sid, H5S_SELECT_SET, elmts_numb, da_elmts3);
CHECK(ret, FAIL, "H5Sselect_elements");
/* Dataspace for memory buffer */
msid = H5Screate_simple(4, mem3_dims, mem3_dims);
CHECK(msid, FAIL, "H5Screate_simple");
@ -205,6 +247,153 @@ static void test_single_end(hid_t file)
CHECK(ret, FAIL, "H5Pclose");
}
/***********************************************************
**
** test_singleEnd_selHyperslab(): Test full hyperslab selection
** of only one block.
**
*************************************************************/
static void test_singleEnd_selHyperslab(hid_t file, hbool_t is_chunked)
{
hid_t sid, did, msid;
char dset_name[NAME_LEN]; /* Dataset name */
herr_t ret; /* Generic error return */
int i, j;
hsize_t da_dims[4] = { 2, 3, 6, 2 };
/* For testing the full selection in the fastest-growing end */
int mem1_buffer[1][1][6][2];
hsize_t mem1_dims[4] = { 1, 1, 6, 2 };
hsize_t mem1_start[4] = { 0, 0, 0, 0 };
hsize_t mem1_count[4] = { 1, 1, 1, 1 };
hsize_t mem1_stride[4] = { 1, 1, 1, 1 };
hsize_t mem1_block[4] = { 1, 1, 6, 2 };
/* For testing the full selection in the slowest-growing end */
int mem2_buffer[2][3][1][1];
hsize_t mem2_dims[4] = { 2, 3, 1, 1 };
hsize_t mem2_start[4] = { 0, 0, 0, 0 };
hsize_t mem2_count[4] = { 1, 1, 1, 1 };
hsize_t mem2_stride[4] = { 1, 1, 1, 1 };
hsize_t mem2_block[4] = { 2, 3, 1, 1 };
/* For testing the full selection in the middle dimensions */
int mem3_buffer[1][3][6][1];
hsize_t mem3_dims[4] = { 1, 3, 6, 1 };
hsize_t mem3_start[4] = { 0, 0, 0, 0 };
hsize_t mem3_count[4] = { 1, 1, 1, 1 };
hsize_t mem3_stride[4] = { 1, 1, 1, 1 };
hsize_t mem3_block[4] = { 1, 3, 6, 1 };
/* Construct dataset's name */
memset(dset_name, 0, NAME_LEN);
strcat(dset_name, SINGLE_END_DSET);
if(is_chunked)
strcat(dset_name, "_chunked");
/* Dataspace for the dataset in file */
sid = H5Screate_simple(4, da_dims, da_dims);
CHECK(sid, FAIL, "H5Screate_simple");
/* ****** Case 1: ******
* Testing the full selection in the fastest-growing end */
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, mem1_start, mem1_stride, mem1_count, mem1_block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
/* Dataspace for memory buffer */
msid = H5Screate_simple(4, mem1_dims, mem1_dims);
CHECK(msid, FAIL, "H5Screate_simple");
ret = H5Sselect_all(msid);
CHECK(ret, FAIL, "H5Sselect_all");
ret = H5Dread(did, H5T_NATIVE_INT, msid, sid, H5P_DEFAULT, mem1_buffer);
CHECK(ret, FAIL, "H5Dread");
ret = H5Dclose(did);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Sclose(msid);
CHECK(ret, FAIL, "H5Sclose");
for(i=0; i<6; i++)
for(j=0; j<2; j++)
if(da_buffer[0][0][i][j] != mem1_buffer[0][0][i][j]) {
TestErrPrintf("Read different values than written at index 0,0,%d,%d\n", i, j);
}
/* ****** Case 2: ******
* Testing the full selection in the slowest-growing end */
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, mem2_start, mem2_stride, mem2_count, mem2_block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
/* Dataspace for memory buffer */
msid = H5Screate_simple(4, mem2_dims, mem2_dims);
CHECK(msid, FAIL, "H5Screate_simple");
ret = H5Sselect_all(msid);
CHECK(ret, FAIL, "H5Sselect_all");
ret = H5Dread(did, H5T_NATIVE_INT, msid, sid, H5P_DEFAULT, mem2_buffer);
CHECK(ret, FAIL, "H5Dread");
ret = H5Dclose(did);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Sclose(msid);
CHECK(ret, FAIL, "H5Sclose");
for(i=0; i<2; i++)
for(j=0; j<3; j++)
if(da_buffer[i][j][0][0] != mem2_buffer[i][j][0][0]) {
TestErrPrintf("Read different values than written at index %d,%d,0,0\n", i, j);
}
/* ****** Case 3: ******
* Testing the full selection in the middle dimensions */
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
ret = H5Sselect_hyperslab(sid, H5S_SELECT_SET, mem3_start, mem3_stride, mem3_count, mem3_block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
/* Dataspace for memory buffer */
msid = H5Screate_simple(4, mem3_dims, mem3_dims);
CHECK(msid, FAIL, "H5Screate_simple");
ret = H5Sselect_all(msid);
CHECK(ret, FAIL, "H5Sselect_all");
ret = H5Dread(did, H5T_NATIVE_INT, msid, sid, H5P_DEFAULT, mem3_buffer);
CHECK(ret, FAIL, "H5Dread");
ret = H5Dclose(did);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Sclose(msid);
CHECK(ret, FAIL, "H5Sclose");
for(i=0; i<3; i++)
for(j=0; j<6; j++)
if(da_buffer[0][i][j][0] != mem3_buffer[0][i][j][0]) {
TestErrPrintf("Read different values than written at index 0,%d,%d,0\n", i, j);
}
ret = H5Sclose(sid);
CHECK(ret, FAIL, "H5Sclose");
}
/***********************************************************
**
@ -212,14 +401,15 @@ static void test_single_end(hid_t file)
** multiple blocks.
**
*************************************************************/
static void test_multiple_ends(hid_t file)
static void test_multiple_ends(hid_t file, hbool_t is_chunked)
{
hid_t sid, plid, did, msid;
char dset_name[NAME_LEN]; /* Dataset name */
herr_t ret; /* Generic error return */
int i, j, k, l, m, n, p;
hsize_t da_dims[8] = { 4, 5, 3, 4, 2, 3, 6, 2 };
hsize_t da_chunksize[8] = { 1, 5, 3, 2, 2, 3, 3, 2 };
int da_buffer[4][5][3][4][2][3][6][2];
int data_buf[4][5][3][4][2][3][6][2];
/* For testing the full selections in the fastest-growing end and in the middle dimensions */
int mem1_buffer[1][1][1][4][2][1][6][2];
@ -269,10 +459,18 @@ static void test_multiple_ends(hid_t file)
plid = H5Pcreate(H5P_DATASET_CREATE);
CHECK(plid, FAIL, "H5Pcreate");
ret = H5Pset_chunk(plid, 8, da_chunksize);
CHECK(ret, FAIL, "H5Pset_chunk");
if(is_chunked) {
ret = H5Pset_chunk(plid, 8, da_chunksize);
CHECK(ret, FAIL, "H5Pset_chunk");
}
did = H5Dcreate2(file, "multiple_ends", H5T_NATIVE_INT, sid, H5P_DEFAULT, plid, H5P_DEFAULT);
/* Construct dataset's name */
memset(dset_name, 0, NAME_LEN);
strcat(dset_name, MULTI_ENDS_SEL_HYPER_DSET);
if(is_chunked)
strcat(dset_name, "_chunked");
did = H5Dcreate2(file, dset_name, H5T_NATIVE_INT, sid, H5P_DEFAULT, plid, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dcreate2");
for(i=0; i<4; i++)
@ -282,11 +480,11 @@ static void test_multiple_ends(hid_t file)
for(m=0; m<2; m++)
for(n=0; n<3; n++)
for(p=0; p<6; p++) {
da_buffer[i][j][k][l][m][n][p][0] = i*1000000 + j*100000 + k*10000 + l*1000 + m*100 + n*10 + p;
da_buffer[i][j][k][l][m][n][p][1] = i*1000000 + j*100000 + k*10000 + l*1000 + m*100 + n*10 + p + 1;
data_buf[i][j][k][l][m][n][p][0] = i*1000000 + j*100000 + k*10000 + l*1000 + m*100 + n*10 + p;
data_buf[i][j][k][l][m][n][p][1] = i*1000000 + j*100000 + k*10000 + l*1000 + m*100 + n*10 + p + 1;
}
ret = H5Dwrite(did, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, da_buffer);
ret = H5Dwrite(did, H5T_NATIVE_INT, sid, sid, H5P_DEFAULT, data_buf);
CHECK(ret, FAIL, "H5Dwrite");
ret = H5Dclose(did);
@ -294,7 +492,7 @@ static void test_multiple_ends(hid_t file)
/* ****** Case 1: ******
* Testing the full selections in the fastest-growing end and in the middle dimensions*/
did = H5Dopen2(file, "multiple_ends", H5P_DEFAULT);
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
@ -320,13 +518,13 @@ static void test_multiple_ends(hid_t file)
for(j=0; j<2; j++)
for(k=0; k<6; k++)
for(l=0; l<2; l++)
if(da_buffer[0][0][0][i][j][0][k][l] != mem1_buffer[0][0][0][i][j][0][k][l]) {
if(data_buf[0][0][0][i][j][0][k][l] != mem1_buffer[0][0][0][i][j][0][k][l]) {
TestErrPrintf("Read different values than written at index 0,0,0,%d,%d,0,%d,%d\n", i, j, k, l);
}
/* ****** Case 2: ******
* Testing the full selections in the slowest-growing end and in the middle dimensions*/
did = H5Dopen2(file, "multiple_ends", H5P_DEFAULT);
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
@ -352,13 +550,13 @@ static void test_multiple_ends(hid_t file)
for(j=0; j<5; j++)
for(k=0; k<4; k++)
for(l=0; l<2; l++)
if(da_buffer[i][j][0][k][l][0][0][0] != mem2_buffer[i][j][0][k][l][0][0][0]) {
if(data_buf[i][j][0][k][l][0][0][0] != mem2_buffer[i][j][0][k][l][0][0][0]) {
TestErrPrintf("Read different values than written at index %d,%d,0,%d,%d,0,0,0\n", i, j, k, l);
}
/* ****** Case 3: ******
* Testing two unadjacent full selections in the middle dimensions */
did = H5Dopen2(file, "multiple_ends", H5P_DEFAULT);
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
@ -384,13 +582,13 @@ static void test_multiple_ends(hid_t file)
for(j=0; j<3; j++)
for(k=0; k<3; k++)
for(l=0; l<6; l++)
if(da_buffer[0][i][j][0][0][k][l][0] != mem3_buffer[0][i][j][0][0][k][l][0]) {
if(data_buf[0][i][j][0][0][k][l][0] != mem3_buffer[0][i][j][0][0][k][l][0]) {
TestErrPrintf("Read different values than written at index 0,%d,%d,0,0,%d,%d,0\n", i, j, k, l);
}
/* ****** Case 4: ******
* Testing the full selections in the fastest-growing end and the slowest-growing end */
did = H5Dopen2(file, "multiple_ends", H5P_DEFAULT);
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
@ -416,7 +614,7 @@ static void test_multiple_ends(hid_t file)
for(j=0; j<5; j++)
for(k=0; k<6; k++)
for(l=0; l<2; l++)
if(da_buffer[i][j][0][0][0][0][k][l] != mem4_buffer[i][j][0][0][0][0][k][l]) {
if(data_buf[i][j][0][0][0][0][k][l] != mem4_buffer[i][j][0][0][0][0][k][l]) {
TestErrPrintf("Read different values than written at index %d,%d,0,0,0,0,%d,%d\n", i, j, k, l);
}
@ -424,7 +622,7 @@ static void test_multiple_ends(hid_t file)
/* ****** Case 5: ******
* Testing the full selections in the fastest-growing end and the slowest-growing end,
* and also in the middle dimensions */
did = H5Dopen2(file, "multiple_ends", H5P_DEFAULT);
did = H5Dopen2(file, dset_name, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen");
/* Select the elements in the dataset */
@ -452,7 +650,7 @@ static void test_multiple_ends(hid_t file)
for(l=0; l<2; l++)
for(m=0; m<6; m++)
for(n=0; n<2; n++)
if(da_buffer[i][j][0][k][l][0][m][n] != mem5_buffer[i][j][0][k][l][0][m][n]) {
if(data_buf[i][j][0][k][l][0][m][n] != mem5_buffer[i][j][0][k][l][0][m][n]) {
TestErrPrintf("Read different values than written at index %d,%d,0,%d,%d,0,%d,%d\n", i, j, k, l, m, n);
}
@ -472,14 +670,24 @@ static void test_multiple_ends(hid_t file)
****************************************************************/
void test_coords(void)
{
hid_t fid;
herr_t ret; /* Generic error return */
hid_t fid;
int i;
hbool_t is_chunk;
herr_t ret; /* Generic error return */
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fcreate");
test_single_end(fid);
test_multiple_ends(fid);
for(i=0, is_chunk=FALSE; i<2; i++, is_chunk++) {
/* Test H5Sselect_elements with selection of one block of data */
test_singleEnd_selElements(fid, is_chunk);
/* Test H5Sselect_hyperslab with selection of one block of data */
test_singleEnd_selHyperslab(fid, is_chunk);
/* Test H5Sselect_hyperslab with selection of multiple blocks of data */
test_multiple_ends(fid, is_chunk);
}
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");