sync bin dir with develop (#3269)

COPYING

@@ -49,7 +49,7 @@ works thereof, in binary and source code form.
 Limited portions of HDF5 were developed by Lawrence Berkeley National 
 Laboratory (LBNL). LBNL's Copyright Notice and Licensing Terms can be
 found here: COPYING_LBNL_HDF5 file in this directory or at 
-http://support.hdfgroup.org/ftp/HDF5/releases/COPYING_LBNL_HDF5. 
+https://raw.githubusercontent.com/hdfgroup/hdf5/develop/COPYING_LBNL_HDF5. 
 
 -----------------------------------------------------------------------------
 -----------------------------------------------------------------------------

bin/buildhdf5

@@ -12,8 +12,6 @@
 #
 # Build HDF5 library by doing configure, make, and tests.
 # Usage: See USAGE()
-# Programmer: Albert Cheng
-# Creation date: Jul  9, 2003
 
 # Some handy definitions
 USAGE()

bin/chkcopyright

@@ -14,10 +14,6 @@
 # Check that all the files have the proper copyright notice.
 # It goes down directories recursively.
 #
-# Programmer: Albert Cheng
-# Created Data: 2003/07/22
-# Modification:
-#	Rewrote most of it. Albert Cheng, 2005/10/10.
 
 # Setup
 #
@@ -363,7 +359,7 @@ MATCH_COPYRIGHT()
 	false
     else
 	if [ $begin -gt 1 ]; then
-	    begin=`expr $begin - 1`
+	    begin=`expr $begin`
 	fi
 	end=`expr $begin + $nlines - 1`
 	sed -n -e "${begin},${end}p" < $f > ${EXTRACTEDFILE}

bin/cmakehdf5

@@ -1,10 +1,5 @@
-#! /bin/sh
+#!/bin/sh
 # Build and Test HDF5 using cmake.
-# Author: Allen Byrne
-#         Albert Cheng
-# Creation Date: Nov 2012
-# Modified:
-#	Changed to use the quick steps described in INSTALL_CMake.txt. (AKC 2014/1/1)
 
 # Copyright: The HDF Group, 2012-14
 
@@ -365,7 +360,7 @@ STEP "Configure..." \
     $with_zlib \
     $with_szlib \
     $srcdir" $configlog &&\
-    cat $config_summary >> $configlog
+    cat src/$config_summary >> $configlog
 
 #      5. Build the C library, tools and tests with this command:
 STEP "Build the library, tools and tests, ..." "cmake --build . --config Release -- $njobs" $makelog

bin/format_source

@@ -5,8 +5,20 @@
 #
 # Note that any files or directories that are excluded here should also be
 # added to the 'exclude' list in .github/workflows/clang-format-check.yml
-#
-# (Remember to update both bin/format_source and bin/format_source_patch)
+
+COMMAND="clang-format"
+
+if [ $# -eq 1 ]; then
+    COMMAND="$COMMAND-$1"
+fi
+
+echo ""
+echo "bin/format_source <version>"
+echo ""
+echo "Format the HDF5 C source using clang-format. The <version>"
+echo "parameter is optional and can be used to force a specific"
+echo "installed version of clang-format to be used."
+echo ""
 
 find . \( -type d -path ./config -prune -and -not -path ./config \) \
     -or \( \( \! \( \
@@ -21,6 +33,6 @@ find . \( -type d -path ./config -prune -and -not -path ./config \) \
         -or -name H5overflow.h \
         \) \) \
     -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp -or -iname *.java \) \) \
-    | xargs -P0 -n1 clang-format -style=file -i -fallback-style=none
+    | xargs -P0 -n1 ${COMMAND} -style=file -i -fallback-style=none
 
 exit 0

bin/h5vers

@@ -16,8 +16,6 @@ use strict;
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-# Robb Matzke
-# 17 July 1998
 
 ### Purpose
 # Increments the hdf5 version number by changing the value of
@@ -118,8 +116,9 @@ Usage: $prog [OPTS] [FILE]
         as \"version 1.1 release 0 (pre1)\" will be printed.
     FILE
         The name of the file that contains version information.  This is
-        seldom necessary since files H5public.h, src/H5public.h and
-        ../src/H5public.h are automatically checked.
+        seldom necessary since the file H5public.h is checked for current
+        working directory at the top level, one level down, or in the src 
+        directory where H5public.h resides.
 EOF
   exit 1;
 }

bin/make_err

@@ -20,8 +20,6 @@ use warnings;
 # Read in the error description text file and create the appropriate headers
 # needed by the library.
 #
-# Programmer: Quincey Koziol
-# Creation Date: 2003/08/12
 
 ##############################################################################
 # Print the copyright into an open file

bin/make_overflow

@@ -22,8 +22,6 @@ my @ctypes = ( () );
 
 # Create assignment overflow #ifdefs
 #
-# Programmer: Quincey Koziol
-# Creation Date: 2009/04/09
 
 ##############################################################################
 # Parse a meaningful line (not a comment or blank line) into the appropriate

bin/make_vers

@@ -34,8 +34,6 @@ $indent = 2;
 # Read in the public symbol version description text file and create the
 # appropriate headers needed by the library.
 #
-# Programmer: Quincey Koziol
-# Creation Date: 2007/07/10
 
 ##############################################################################
 # Print the copyright into an open file
@@ -509,7 +507,7 @@ for $file (@ARGV) {
     close SOURCE;
 
     # Create header files
-    print "Generating '", $prefix, "H5version.h'\n";
+    print "Generating 'H5version.h'\n";
     create_public($prefix);
 
 #for $name (sort keys %functions) {

bin/output_filter.sh

@@ -11,8 +11,6 @@
 # This contains function definitions of output filtering.
 # This file should only be sourced in by another shell script.
 #
-# Programmer: Albert Cheng
-# Created Date: 2011/5/3
 
 
 # Comment added to address HDFFV-8270:

bin/release

@@ -206,7 +206,7 @@ tar2cmakezip()
     cp /mnt/scr1/pre-release/hdf5/CMake/LIBAEC.tar.gz $cmziptmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmziptmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-2.0.3-Source.zip $cmziptmpsubdir
-    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_14_0.zip $cmziptmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_14_1.zip $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/HDF5options.cmake $cmziptmpsubdir
@@ -298,7 +298,7 @@ tar2cmaketgz()
     cp /mnt/scr1/pre-release/hdf5/CMake/LIBAEC.tar.gz $cmgztmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmgztmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-2.0.3-Source.tar.gz $cmgztmpsubdir
-    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_14_0.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_14_1.tar.gz $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5options.cmake $cmgztmpsubdir
@@ -377,7 +377,7 @@ tar2hpccmaketgz()
     cp /mnt/scr1/pre-release/hdf5/CMake/LIBAEC.tar.gz $cmgztmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmgztmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-2.0.3-Source.tar.gz $cmgztmpsubdir
-    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_14_0.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_14_1.tar.gz $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmgztmpsubdir
 

bin/switch_maint_mode

@@ -12,8 +12,6 @@
 #
 # Switch AM_MAINTAINER_MODE value in configure.ac
 # Usage: See USAGE()
-# Programmer: Dana Robinson
-# Creation date: January 2016
 
 USAGE()
 {

bin/warnhist

@@ -13,9 +13,6 @@ use warnings;
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-# Quincey Koziol
-#  9 Aug 2013
-#
 # Purpose: Given an input file containing the output from a build of the
 #	   library, gather the file names and line numbers, alias
 #          identical types of warnings together into a single bin and