[svn-r10977] Purpose: Bug fix

Description:
          1.7 daily tests failed in HL library when Fortran was not
          enabled; also long long instead of long_long declarations
          were used and caused failures on Windows

Solution:
          Removed Fortran related functions (except H5IM_find_palette) from
          H5IM.c file and put it into fortran/src/H5IMcc.c
          Modified appropriate Makefile.am files, regenerated Makefile.in files,          updated header files, MANIFEST, etc.

          Note: H5IM_find_palette should be also in H5IMcc.c, but
          for some unknown to me reason, linking fails if the function is
          included in H5IMcc.c. I will really appreciate if some C guru
          will look into the code and figure out what is wrong :-) Thanks!


Platforms tested: mir with g95, heping with and without Fortran enabled

Misc. update:
This commit is contained in:
Elena Pourmal 2005-06-24 00:00:01 -05:00
parent e38365206a
commit 2ab6b12b55
12 changed files with 525 additions and 467 deletions

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@ -1,4 +1,4 @@
#------------------------------------------------------------------------------
a------------------------------------------------------------------------------
# This is the list of files that are part of HDF5 source distribution.
# All files have a `./' prefix and appear in lexicographic order.
# Lines that end with _DO_NOT_DISTRIBUTE_ will not be included in a
@ -1665,6 +1665,8 @@
./hl/test/earth.pal
# hl fortran
./hl/fortran/src/H5IMcc.c
./hl/fortran/src/H5IMcc.h
./hl/fortran/src/H5IMfc.c
./hl/fortran/src/H5IMff.f90
./hl/fortran/src/H5LTf90proto.h

424
hl/fortran/src/H5IMcc.c Normal file
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@ -0,0 +1,424 @@
/****************************************************************************
* NCSA HDF *
* Scientific Data Technologies *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING file. *
* *
****************************************************************************/
#include "H5IM.h"
#include "H5IMcc.h"
#include "H5f90i_gen.h"
#include <string.h>
#include <stdlib.h>
/*-------------------------------------------------------------------------
* Function: H5IMmake_image_8bitf
*
* Purpose: Creates and writes an image an 8 bit image
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows the creation and writing of an 8bit image on disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMmake_image_8bitf( hid_t loc_id,
const char *dset_name,
hsize_t width,
hsize_t height,
int_f *buf )
{
hid_t did; /* dataset ID */
hid_t sid; /* space ID */
hsize_t dims[IMAGE8_RANK]; /* dimensions */
/* initialize the image dimensions */
dims[0] = height;
dims[1] = width;
dims[2] = 1;
/*-------------------------------------------------------------------------
* create and write the dataset
*-------------------------------------------------------------------------
*/
/* create the data space for the dataset. */
if ((sid=H5Screate_simple(IMAGE8_RANK,dims,NULL))<0)
return -1;
/* create the dataset as H5T_NATIVE_UCHAR */
if ((did=H5Dcreate(loc_id,dset_name,H5T_NATIVE_UINT8,sid,H5P_DEFAULT))<0)
return -1;
/* write with memory type H5T_NATIVE_INT */
/* Use long type if Fortran integer is 8 bytes and C long long is also 8 bytes*/
/* Fail if otherwise */
if (buf)
{
if (sizeof(int_f) == sizeof(int)) {
if (H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long)) {
if (H5Dwrite(did,H5T_NATIVE_LONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long_long)) {
if (H5Dwrite(did,H5T_NATIVE_LLONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else
return -1;
}
/* close */
if (H5Dclose(did)<0)
return -1;
if (H5Sclose(sid)<0)
return -1;
/*-------------------------------------------------------------------------
* attach the specification attributes
*-------------------------------------------------------------------------
*/
/* attach the CLASS attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "CLASS", IMAGE_CLASS ) < 0 )
return -1;
/* attach the VERSION attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "IMAGE_VERSION", IMAGE_VERSION ) < 0 )
return -1;
/* attach the IMAGE_SUBCLASS attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "IMAGE_SUBCLASS", "IMAGE_INDEXED" ) < 0 )
return -1;
return 0;
}
/*-------------------------------------------------------------------------
* Function: H5IMmake_image_24bitf
*
* Purpose:
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows the creation and writing of an 8bit image on disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* Interlace Mode Dimensions in the Dataspace
* INTERLACE_PIXEL [height][width][pixel components]
* INTERLACE_PLANE [pixel components][height][width]
*
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMmake_image_24bitf( hid_t loc_id,
const char *dset_name,
hsize_t width,
hsize_t height,
const char *interlace,
int_f *buf)
{
hid_t did; /* dataset ID */
hid_t sid; /* space ID */
hsize_t dims[IMAGE24_RANK]; /* dimensions */
/*-------------------------------------------------------------------------
* attach the image dimensions according to the interlace mode
*-------------------------------------------------------------------------
*/
if ( strcmp( interlace, "INTERLACE_PIXEL" ) == 0 )
{
/* Number of color planes is defined as the third dimension */
dims[0] = height;
dims[1] = width;
dims[2] = IMAGE24_RANK;
}
else
if ( strcmp( interlace, "INTERLACE_PLANE" ) == 0 )
{
/* Number of color planes is defined as the first dimension */
dims[0] = IMAGE24_RANK;
dims[1] = height;
dims[2] = width;
}
else return -1;
/*-------------------------------------------------------------------------
* create and write the dataset
*-------------------------------------------------------------------------
*/
/* create the data space for the dataset. */
if ((sid=H5Screate_simple(IMAGE24_RANK,dims,NULL))<0)
return -1;
/* create the dataset as H5T_NATIVE_UCHAR */
if ((did=H5Dcreate(loc_id,dset_name,H5T_NATIVE_UCHAR,sid,H5P_DEFAULT))<0)
return -1;
/* write with memory type H5T_NATIVE_INT */
if (buf)
{
if (sizeof(int_f) == sizeof(int)) {
if (H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long)) {
if (H5Dwrite(did,H5T_NATIVE_LONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long_long)) {
if (H5Dwrite(did,H5T_NATIVE_LLONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else
return -1;
}
/* close */
if (H5Dclose(did)<0)
return -1;
if (H5Sclose(sid)<0)
return -1;
/*-------------------------------------------------------------------------
* attach the specification attributes
*-------------------------------------------------------------------------
*/
/* Attach the CLASS attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "CLASS", IMAGE_CLASS ) < 0 )
return -1;
/* Attach the VERSION attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "IMAGE_VERSION", IMAGE_VERSION ) < 0 )
return -1;
/* Attach the IMAGE_SUBCLASS attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "IMAGE_SUBCLASS", "IMAGE_TRUECOLOR" ) < 0 )
return -1;
/* Attach the INTERLACE_MODE attribute. This attributes is only for true color images */
if ( H5LTset_attribute_string( loc_id, dset_name, "INTERLACE_MODE", interlace ) < 0 )
return -1;
return 0;
}
/*-------------------------------------------------------------------------
* Function: H5IMread_imagef
*
* Purpose: Reads image data from disk.
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows reading of an 8bit image on disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMread_imagef( hid_t loc_id,
const char *dset_name,
int_f *buf )
{
hid_t did;
/* open the dataset */
if ( (did = H5Dopen( loc_id, dset_name )) < 0 )
return -1;
/* read to memory type H5T_NATIVE_INT */
if (sizeof(int_f) == sizeof(int)){
if ( H5Dread( did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf ) < 0 )
goto out;}
else if (sizeof(int_f) == sizeof(long)) {
if ( H5Dread( did, H5T_NATIVE_LONG, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf ) < 0 )
goto out;}
else if (sizeof(int_f) == sizeof(long_long)) {
if ( H5Dread( did, H5T_NATIVE_LLONG, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf ) < 0 )
goto out;}
else
goto out;
/* close */
if ( H5Dclose( did ) )
return -1;
return 0;
out:
H5Dclose( did );
return -1;
}
/*-------------------------------------------------------------------------
* Function: H5IMmake_palettef
*
* Purpose: Creates and writes a palette.
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows writing of an 8bit palette to disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* based on HDF5 Image and Palette Specification
* http://hdf.ncsa.uiuc.edu/HDF5/H5Image/ImageSpec.html
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMmake_palettef( hid_t loc_id,
const char *pal_name,
const hsize_t *pal_dims,
int_f *pal_data )
{
hid_t did; /* dataset ID */
hid_t sid; /* space ID */
int has_pal;
/* Check if the dataset already exists */
has_pal = H5LTfind_dataset( loc_id, pal_name );
/* It exists. Return */
if ( has_pal == 1 )
return 0;
/*-------------------------------------------------------------------------
* create and write the dataset
*-------------------------------------------------------------------------
*/
/* create the data space for the dataset. */
if ((sid=H5Screate_simple(2,pal_dims,NULL))<0)
return -1;
/* create the dataset as H5T_NATIVE_UCHAR */
if ((did=H5Dcreate(loc_id,pal_name,H5T_NATIVE_UCHAR,sid,H5P_DEFAULT))<0)
return -1;
/* write with memory type H5T_NATIVE_INT */
if (pal_data)
{
if (sizeof(int_f) == sizeof(int)) {
if (H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,pal_data)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long)) {
if (H5Dwrite(did,H5T_NATIVE_LONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,pal_data)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long_long)) {
if (H5Dwrite(did,H5T_NATIVE_LLONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,pal_data)<0)
return -1;}
else
return -1;
}
/* close */
if (H5Dclose(did)<0)
return -1;
if (H5Sclose(sid)<0)
return -1;
/*-------------------------------------------------------------------------
* attach the specification attributes
*-------------------------------------------------------------------------
*/
/* Attach the attribute "CLASS" to the >>palette<< dataset*/
if ( H5LTset_attribute_string( loc_id, pal_name, "CLASS", PALETTE_CLASS ) < 0 )
return -1;
/* Attach the attribute "PAL_VERSION" to the >>palette<< dataset*/
if ( H5LTset_attribute_string( loc_id, pal_name, "PAL_VERSION", "1.2" ) < 0 )
return -1;
return 0;
}
/*-------------------------------------------------------------------------
* Function: H5IMget_palettef
*
* Purpose: Read palette
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows reading of an 8bit palette from disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* based on HDF5 Image and Palette Specification
* http://hdf.ncsa.uiuc.edu/HDF5/H5Image/ImageSpec.html
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMget_palettef( hid_t loc_id,
const char *image_name,
int pal_number,
int_f *pal_data )
{
if(sizeof(int_f) == sizeof(int))
return H5IM_get_palette(loc_id,image_name,pal_number,H5T_NATIVE_INT,pal_data);
else if (sizeof(int_f) == sizeof(long))
return H5IM_get_palette(loc_id,image_name,pal_number,H5T_NATIVE_LONG,pal_data);
else if (sizeof(int_f) == sizeof(long_long))
return H5IM_get_palette(loc_id,image_name,pal_number,H5T_NATIVE_LLONG,pal_data);
else
return -1;
}

66
hl/fortran/src/H5IMcc.h Normal file
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@ -0,0 +1,66 @@
/****************************************************************************
* NCSA HDF *
* Scientific Data Technologies *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING file. *
* *
****************************************************************************/
#ifndef _H5IMCC_H
#define _H5IMCC_H
#include "H5LT.h"
#include "H5IM.h"
#include "../../fortran/src/H5f90i_gen.h"
#ifdef __cplusplus
extern "C" {
#endif
#define IMAGE_CLASS "IMAGE"
#define PALETTE_CLASS "PALETTE"
#define IMAGE_VERSION "1.2"
#define IMAGE8_RANK 3
#define IMAGE24_RANK 3
herr_t H5IMmake_image_8bitf( hid_t loc_id,
const char *dset_name,
hsize_t width,
hsize_t height,
int_f *buf );
herr_t H5IMmake_image_24bitf( hid_t loc_id,
const char *dset_name,
hsize_t width,
hsize_t height,
const char *interlace,
int_f *buf);
herr_t H5IMread_imagef( hid_t loc_id,
const char *dset_name,
int_f *buf );
herr_t H5IMmake_palettef( hid_t loc_id,
const char *pal_name,
const hsize_t *pal_dims,
int_f *pal_data );
herr_t H5IMget_palettef( hid_t loc_id,
const char *image_name,
int pal_number,
int_f *pal_data );
#ifdef __cplusplus
}
#endif
#endif

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@ -305,7 +305,7 @@ nh5ltset_attribute_int_c(hid_t_f *loc_id,
ret = H5LTset_attribute_int(c_loc_id,c_name,c_attrname,buf,c_size);
else if (sizeof(int_f) == sizeof(long))
ret = H5LTset_attribute_long(c_loc_id,c_name,c_attrname,buf,c_size);
else if (sizeof(int_f) == sizeof(long long))
else if (sizeof(int_f) == sizeof(long_long))
ret = H5LTset_attribute_long_long(c_loc_id,c_name,c_attrname,buf,c_size);
else
return ret_value;
@ -551,7 +551,7 @@ nh5ltget_attribute_int_c(hid_t_f *loc_id,
ret = H5LTget_attribute_int(c_loc_id,c_name,c_attrname,buf);
else if (sizeof(int_f) == sizeof(long))
ret = H5LTget_attribute_long(c_loc_id,c_name,c_attrname,buf);
else if (sizeof(int_f) == sizeof(long long))
else if (sizeof(int_f) == sizeof(long_long))
ret = H5LTget_attribute_long_long(c_loc_id,c_name,c_attrname,buf);
else
return ret_value;

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@ -22,14 +22,14 @@ AM_LDFLAGS=-static
lib_LTLIBRARIES=libhdf5hl_fortran.la
# Source files for the library
if BUILD_PARALLEL_CONDITIONAL
PARALLEL_COND_SRC=HDFDmpiof.c HDF5mpio.f90
endif
#if BUILD_PARALLEL_CONDITIONAL
# PARALLEL_COND_SRC=HDFDmpiof.c HDF5mpio.f90
#endif
libhdf5hl_fortran_la_SOURCES=H5LTfc.c H5IMfc.c H5TBfc.c H5LTff.f90 \
libhdf5hl_fortran_la_SOURCES=H5LTfc.c H5IMfc.c H5IMcc.c H5TBfc.c H5LTff.f90 \
H5IMff.f90 H5TBff.f90
libhdf5hl_fortran_la_LIBADD=$(LIBH5_HL)
#libhdf5hl_fortran_la_LIBADD=$(LIBH5_HL)
# Fortran module files can have different extensions and different names
# (e.g., different capitalizations) on different platforms. Write rules

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@ -65,10 +65,9 @@ am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
am__installdirs = "$(DESTDIR)$(libdir)"
libLTLIBRARIES_INSTALL = $(INSTALL)
LTLIBRARIES = $(lib_LTLIBRARIES)
am__DEPENDENCIES_1 = $(top_builddir)/hl/src/libhdf5_hl.la
libhdf5hl_fortran_la_DEPENDENCIES = $(am__DEPENDENCIES_1)
am_libhdf5hl_fortran_la_OBJECTS = H5LTfc.lo H5IMfc.lo H5TBfc.lo \
H5LTff.lo H5IMff.lo H5TBff.lo
libhdf5hl_fortran_la_LIBADD =
am_libhdf5hl_fortran_la_OBJECTS = H5LTfc.lo H5IMfc.lo H5IMcc.lo \
H5TBfc.lo H5LTff.lo H5IMff.lo H5TBff.lo
libhdf5hl_fortran_la_OBJECTS = $(am_libhdf5hl_fortran_la_OBJECTS)
DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir)/src
depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
@ -309,11 +308,12 @@ AM_LDFLAGS = -static
lib_LTLIBRARIES = libhdf5hl_fortran.la
# Source files for the library
@BUILD_PARALLEL_CONDITIONAL_TRUE@PARALLEL_COND_SRC = HDFDmpiof.c HDF5mpio.f90
libhdf5hl_fortran_la_SOURCES = H5LTfc.c H5IMfc.c H5TBfc.c H5LTff.f90 \
#if BUILD_PARALLEL_CONDITIONAL
# PARALLEL_COND_SRC=HDFDmpiof.c HDF5mpio.f90
#endif
libhdf5hl_fortran_la_SOURCES = H5LTfc.c H5IMfc.c H5IMcc.c H5TBfc.c H5LTff.f90 \
H5IMff.f90 H5TBff.f90
libhdf5hl_fortran_la_LIBADD = $(LIBH5_HL)
# Automake needs to be taught how to build lib, progs, and tests targets.
# These will be filled in automatically for the most part (e.g.,
@ -396,6 +396,7 @@ mostlyclean-compile:
distclean-compile:
-rm -f *.tab.c
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5IMcc.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5IMfc.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5LTfc.Plo@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/H5TBfc.Plo@am__quote@
@ -617,6 +618,8 @@ uninstall-am: uninstall-info-am uninstall-libLTLIBRARIES \
uninstall-libLTLIBRARIES uninstall-local
#libhdf5hl_fortran_la_LIBADD=$(LIBH5_HL)
# Fortran module files can have different extensions and different names
# (e.g., different capitalizations) on different platforms. Write rules
# for them explicitly rather than trying to teach automake about them.

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@ -11,7 +11,7 @@
include $(top_srcdir)/config/commence.am
AM_CPPFLAGS=-I$(top_srcdir)/src $(top_builddir)/src
AM_CPPFLAGS=-I$(top_srcdir)/src -I$(top_builddir)/src -I$(top_srcdir)/hl/src
AM_FCFLAGS=-I$(top_builddir)/fortran/src -I$(top_builddir)/hl/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/hl/fortran/src
# Fortran libraries are linked statically to solve a build problem.
@ -21,7 +21,7 @@ AM_LDFLAGS=-static
TEST_PROG=tstlite tstimage tsttable
check_PROGRAMS=$(TEST_PROG)
LDADD=$(LIBH5_HL) $(LIBH5F_HL) $(LIBH5F) $(LIBHDF5)
LDADD= $(LIBH5F_HL) $(LIBH5F) $(LIBH5_HL) $(LIBHDF5)
# Source files for the programs
tstlite_SOURCES=tstlite.f90

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@ -60,10 +60,10 @@ am__EXEEXT_1 = tstlite$(EXEEXT) tstimage$(EXEEXT) tsttable$(EXEEXT)
am_tstimage_OBJECTS = tstimage.$(OBJEXT)
tstimage_OBJECTS = $(am_tstimage_OBJECTS)
tstimage_LDADD = $(LDADD)
am__DEPENDENCIES_1 = $(top_builddir)/hl/src/libhdf5_hl.la
am__DEPENDENCIES_2 = \
am__DEPENDENCIES_1 = \
$(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
am__DEPENDENCIES_3 = $(top_builddir)/fortran/src/libhdf5_fortran.la
am__DEPENDENCIES_2 = $(top_builddir)/fortran/src/libhdf5_fortran.la
am__DEPENDENCIES_3 = $(top_builddir)/hl/src/libhdf5_hl.la
am__DEPENDENCIES_4 = $(top_builddir)/src/libhdf5.la
tstimage_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2) \
$(am__DEPENDENCIES_3) $(am__DEPENDENCIES_4)
@ -295,7 +295,7 @@ H5CC = $(bindir)/h5cc
H5CC_PP = $(bindir)/h5pcc
H5FC = $(bindir)/h5fc
H5FC_PP = $(bindir)/h5pfc
AM_CPPFLAGS = -I$(top_srcdir)/src $(top_builddir)/src
AM_CPPFLAGS = -I$(top_srcdir)/src -I$(top_builddir)/src -I$(top_srcdir)/hl/src
AM_FCFLAGS = -I$(top_builddir)/fortran/src -I$(top_builddir)/hl/fortran/src $(F9XMODFLAG)$(top_builddir)/fortran/src $(F9XMODFLAG)$(top_builddir)/hl/fortran/src
# Fortran libraries are linked statically to solve a build problem.
@ -303,7 +303,7 @@ AM_LDFLAGS = -static
# Our main target, the test programs
TEST_PROG = tstlite tstimage tsttable
LDADD = $(LIBH5_HL) $(LIBH5F_HL) $(LIBH5F) $(LIBHDF5)
LDADD = $(LIBH5F_HL) $(LIBH5F) $(LIBH5_HL) $(LIBHDF5)
# Source files for the programs
tstlite_SOURCES = tstlite.f90

View File

@ -11,7 +11,6 @@
****************************************************************************/
#include "H5IM.h"
#include "../../fortran/src/H5f90i_gen.h"
#include <string.h>
@ -21,13 +20,11 @@
* private functions
*-------------------------------------------------------------------------
*/
static
herr_t H5IM_get_palette( hid_t loc_id,
const char *image_name,
int pal_number,
hid_t tid,
int_f *pal_data);
void *pal_data);
/*-------------------------------------------------------------------------
* Function: H5IMmake_image_8bit
@ -1268,412 +1265,6 @@ out:
}
/*-------------------------------------------------------------------------
* Function: H5IMmake_image_8bitf
*
* Purpose: Creates and writes an image an 8 bit image
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows the creation and writing of an 8bit image on disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMmake_image_8bitf( hid_t loc_id,
const char *dset_name,
hsize_t width,
hsize_t height,
int_f *buf )
{
hid_t did; /* dataset ID */
hid_t sid; /* space ID */
hsize_t dims[IMAGE8_RANK]; /* dimensions */
/* initialize the image dimensions */
dims[0] = height;
dims[1] = width;
dims[2] = 1;
/*-------------------------------------------------------------------------
* create and write the dataset
*-------------------------------------------------------------------------
*/
/* create the data space for the dataset. */
if ((sid=H5Screate_simple(IMAGE8_RANK,dims,NULL))<0)
return -1;
/* create the dataset as H5T_NATIVE_UCHAR */
if ((did=H5Dcreate(loc_id,dset_name,H5T_NATIVE_UINT8,sid,H5P_DEFAULT))<0)
return -1;
/* write with memory type H5T_NATIVE_INT */
/* Use long type if Fortran integer is 8 bytes and C long long is also 8 bytes*/
/* Fail if otherwise */
if (buf)
{
if (sizeof(int_f) == sizeof(int)) {
if (H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long)) {
if (H5Dwrite(did,H5T_NATIVE_LONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long long)) {
if (H5Dwrite(did,H5T_NATIVE_LLONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else
return -1;
}
/* close */
if (H5Dclose(did)<0)
return -1;
if (H5Sclose(sid)<0)
return -1;
/*-------------------------------------------------------------------------
* attach the specification attributes
*-------------------------------------------------------------------------
*/
/* attach the CLASS attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "CLASS", IMAGE_CLASS ) < 0 )
return -1;
/* attach the VERSION attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "IMAGE_VERSION", IMAGE_VERSION ) < 0 )
return -1;
/* attach the IMAGE_SUBCLASS attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "IMAGE_SUBCLASS", "IMAGE_INDEXED" ) < 0 )
return -1;
return 0;
}
/*-------------------------------------------------------------------------
* Function: H5IMmake_image_24bitf
*
* Purpose:
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows the creation and writing of an 8bit image on disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* Interlace Mode Dimensions in the Dataspace
* INTERLACE_PIXEL [height][width][pixel components]
* INTERLACE_PLANE [pixel components][height][width]
*
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMmake_image_24bitf( hid_t loc_id,
const char *dset_name,
hsize_t width,
hsize_t height,
const char *interlace,
int_f *buf)
{
hid_t did; /* dataset ID */
hid_t sid; /* space ID */
hsize_t dims[IMAGE24_RANK]; /* dimensions */
/*-------------------------------------------------------------------------
* attach the image dimensions according to the interlace mode
*-------------------------------------------------------------------------
*/
if ( strcmp( interlace, "INTERLACE_PIXEL" ) == 0 )
{
/* Number of color planes is defined as the third dimension */
dims[0] = height;
dims[1] = width;
dims[2] = IMAGE24_RANK;
}
else
if ( strcmp( interlace, "INTERLACE_PLANE" ) == 0 )
{
/* Number of color planes is defined as the first dimension */
dims[0] = IMAGE24_RANK;
dims[1] = height;
dims[2] = width;
}
else return -1;
/*-------------------------------------------------------------------------
* create and write the dataset
*-------------------------------------------------------------------------
*/
/* create the data space for the dataset. */
if ((sid=H5Screate_simple(IMAGE24_RANK,dims,NULL))<0)
return -1;
/* create the dataset as H5T_NATIVE_UCHAR */
if ((did=H5Dcreate(loc_id,dset_name,H5T_NATIVE_UCHAR,sid,H5P_DEFAULT))<0)
return -1;
/* write with memory type H5T_NATIVE_INT */
if (buf)
{
if (sizeof(int_f) == sizeof(int)) {
if (H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long)) {
if (H5Dwrite(did,H5T_NATIVE_LONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long long)) {
if (H5Dwrite(did,H5T_NATIVE_LLONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
return -1;}
else
return -1;
}
/* close */
if (H5Dclose(did)<0)
return -1;
if (H5Sclose(sid)<0)
return -1;
/*-------------------------------------------------------------------------
* attach the specification attributes
*-------------------------------------------------------------------------
*/
/* Attach the CLASS attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "CLASS", IMAGE_CLASS ) < 0 )
return -1;
/* Attach the VERSION attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "IMAGE_VERSION", IMAGE_VERSION ) < 0 )
return -1;
/* Attach the IMAGE_SUBCLASS attribute */
if ( H5LTset_attribute_string( loc_id, dset_name, "IMAGE_SUBCLASS", "IMAGE_TRUECOLOR" ) < 0 )
return -1;
/* Attach the INTERLACE_MODE attribute. This attributes is only for true color images */
if ( H5LTset_attribute_string( loc_id, dset_name, "INTERLACE_MODE", interlace ) < 0 )
return -1;
return 0;
}
/*-------------------------------------------------------------------------
* Function: H5IMread_imagef
*
* Purpose: Reads image data from disk.
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows reading of an 8bit image on disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMread_imagef( hid_t loc_id,
const char *dset_name,
int_f *buf )
{
hid_t did;
/* open the dataset */
if ( (did = H5Dopen( loc_id, dset_name )) < 0 )
return -1;
/* read to memory type H5T_NATIVE_INT */
if (sizeof(int_f) == sizeof(int)){
if ( H5Dread( did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf ) < 0 )
goto out;}
else if (sizeof(int_f) == sizeof(long)) {
if ( H5Dread( did, H5T_NATIVE_LONG, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf ) < 0 )
goto out;}
else if (sizeof(int_f) == sizeof(long long)) {
if ( H5Dread( did, H5T_NATIVE_LLONG, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf ) < 0 )
goto out;}
else
goto out;
/* close */
if ( H5Dclose( did ) )
return -1;
return 0;
out:
H5Dclose( did );
return -1;
}
/*-------------------------------------------------------------------------
* Function: H5IMmake_palettef
*
* Purpose: Creates and writes a palette.
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows writing of an 8bit palette to disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* based on HDF5 Image and Palette Specification
* http://hdf.ncsa.uiuc.edu/HDF5/H5Image/ImageSpec.html
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMmake_palettef( hid_t loc_id,
const char *pal_name,
const hsize_t *pal_dims,
int_f *pal_data )
{
hid_t did; /* dataset ID */
hid_t sid; /* space ID */
int has_pal;
/* Check if the dataset already exists */
has_pal = H5LTfind_dataset( loc_id, pal_name );
/* It exists. Return */
if ( has_pal == 1 )
return 0;
/*-------------------------------------------------------------------------
* create and write the dataset
*-------------------------------------------------------------------------
*/
/* create the data space for the dataset. */
if ((sid=H5Screate_simple(2,pal_dims,NULL))<0)
return -1;
/* create the dataset as H5T_NATIVE_UCHAR */
if ((did=H5Dcreate(loc_id,pal_name,H5T_NATIVE_UCHAR,sid,H5P_DEFAULT))<0)
return -1;
/* write with memory type H5T_NATIVE_INT */
if (pal_data)
{
if (sizeof(int_f) == sizeof(int)) {
if (H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,pal_data)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long)) {
if (H5Dwrite(did,H5T_NATIVE_LONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,pal_data)<0)
return -1;}
else if (sizeof(int_f) == sizeof(long long)) {
if (H5Dwrite(did,H5T_NATIVE_LLONG,H5S_ALL,H5S_ALL,H5P_DEFAULT,pal_data)<0)
return -1;}
else
return -1;
}
/* close */
if (H5Dclose(did)<0)
return -1;
if (H5Sclose(sid)<0)
return -1;
/*-------------------------------------------------------------------------
* attach the specification attributes
*-------------------------------------------------------------------------
*/
/* Attach the attribute "CLASS" to the >>palette<< dataset*/
if ( H5LTset_attribute_string( loc_id, pal_name, "CLASS", PALETTE_CLASS ) < 0 )
return -1;
/* Attach the attribute "PAL_VERSION" to the >>palette<< dataset*/
if ( H5LTset_attribute_string( loc_id, pal_name, "PAL_VERSION", "1.2" ) < 0 )
return -1;
return 0;
}
/*-------------------------------------------------------------------------
* Function: H5IMget_palettef
*
* Purpose: Read palette
*
* Return: Success: 0, Failure: -1
*
* Programmer: Pedro Vicente Nunes, pvn@ncsa.uiuc.edu
*
* Date: May 10, 2005
*
* Comments:
* This function allows reading of an 8bit palette from disk.
* The memory datatype is H5T_NATIVE_INT. It is supposed to be called from
* the FORTRAN interface where the image buffer is defined as type "integer"
*
* based on HDF5 Image and Palette Specification
* http://hdf.ncsa.uiuc.edu/HDF5/H5Image/ImageSpec.html
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t H5IMget_palettef( hid_t loc_id,
const char *image_name,
int pal_number,
int_f *pal_data )
{
if(sizeof(int_f) == sizeof(int))
return H5IM_get_palette(loc_id,image_name,pal_number,H5T_NATIVE_INT,pal_data);
else if (sizeof(int_f) == sizeof(long))
return H5IM_get_palette(loc_id,image_name,pal_number,H5T_NATIVE_LONG,pal_data);
else if (sizeof(int_f) == sizeof(long long))
return H5IM_get_palette(loc_id,image_name,pal_number,H5T_NATIVE_LLONG,pal_data);
else
return -1;
}
/*-------------------------------------------------------------------------
* Function: H5IM_get_palette
*
@ -1700,13 +1291,11 @@ herr_t H5IMget_palettef( hid_t loc_id,
*
*-------------------------------------------------------------------------
*/
static
herr_t H5IM_get_palette( hid_t loc_id,
const char *image_name,
int pal_number,
hid_t tid,
int_f *pal_data)
void *pal_data)
{
hid_t image_id;
int has_pal;
@ -1793,4 +1382,5 @@ out:
H5Dclose( image_id );
return -1;
}

View File

@ -16,7 +16,6 @@
#define _H5IM_H
#include "H5LT.h"
#include "../../fortran/src/H5f90i_gen.h"
#ifdef __cplusplus
extern "C" {
@ -90,32 +89,8 @@ herr_t H5IMis_image( hid_t loc_id,
herr_t H5IMis_palette( hid_t loc_id,
const char *dset_name );
herr_t H5IMmake_image_8bitf( hid_t loc_id,
const char *dset_name,
hsize_t width,
hsize_t height,
int_f *buf );
herr_t H5IMmake_image_24bitf( hid_t loc_id,
const char *dset_name,
hsize_t width,
hsize_t height,
const char *interlace,
int_f *buf);
herr_t H5IMread_imagef( hid_t loc_id,
const char *dset_name,
int_f *buf );
herr_t H5IMmake_palettef( hid_t loc_id,
const char *pal_name,
const hsize_t *pal_dims,
int_f *pal_data );
herr_t H5IMget_palettef( hid_t loc_id,
const char *image_name,
int pal_number,
int_f *pal_data );
herr_t H5IM_find_palette( hid_t loc_id );
#ifdef __cplusplus

View File

@ -1571,8 +1571,7 @@ herr_t H5LTset_attribute_long( hid_t loc_id,
*
* Date: June 17, 2005
*
* Comments: This function was added to support 8-bytes int_f type that
* may correspond to INTEGER*8 in Fortran
* Comments: This function was added to support attributes of type long long
*
*-------------------------------------------------------------------------
*/
@ -1580,7 +1579,7 @@ herr_t H5LTset_attribute_long( hid_t loc_id,
herr_t H5LTset_attribute_long_long( hid_t loc_id,
const char *obj_name,
const char *attr_name,
const long long *data,
const long_long *data,
size_t size )
{
@ -2495,7 +2494,6 @@ herr_t H5LTget_attribute_long_long( hid_t loc_id,
}
/*-------------------------------------------------------------------------
/*-------------------------------------------------------------------------
* Function: H5LTget_attribute_ulong

View File

@ -214,7 +214,7 @@ herr_t H5LTset_attribute_long( hid_t loc_id,
herr_t H5LTset_attribute_long_long( hid_t loc_id,
const char *obj_name,
const char *attr_name,
const long long *buffer,
const long_long *buffer,
size_t size );
herr_t H5LTset_attribute_ulong( hid_t loc_id,