mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-11-27 02:10:55 +08:00
[svn-r3489] Purpose:
Code Movement Description: Moved tools code into their own separate subdirectories Platforms tested: Linux, Kelgia
This commit is contained in:
parent
416a86e3ce
commit
2821175f3f
0
tools/h5ls/Dependencies
Normal file
0
tools/h5ls/Dependencies
Normal file
55
tools/h5ls/Makefile.in
Normal file
55
tools/h5ls/Makefile.in
Normal file
@ -0,0 +1,55 @@
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## HDF5 Library Makefile(.in)
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##
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## Copyright (C) 2001 National Center for Supercomputing Applications.
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## All rights reserved.
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##
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##
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top_srcdir=@top_srcdir@
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top_builddir=../..
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srcdir=@srcdir@
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SUBDIRS=
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@COMMENCE@
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## Add include directory to the C preprocessor flags, add -lh5tools and
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## -lhdf5 to the list of libraries.
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##
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CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src \
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-I$(top_srcdir)/tools/lib @CPPFLAGS@
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## Test programs and scripts.
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##
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TEST_PROGS=
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TEST_SCRIPTS=$(srcdir)/testh5ls.sh
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## These are our main targets: library and tools.
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##
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LIBTOOLS=../lib/libh5tools.la
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LIBHDF5=$(top_builddir)/src/libhdf5.la
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PUB_PROGS=h5ls
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PROGS=$(PUB_PROGS) $(TEST_PROGS)
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## Source and object files for the library; do not install
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LIB_SRC=
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LIB_OBJ=$(LIB_SRC:.c=.lo)
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PUB_LIB=
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## Source and object files for programs...
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PROG_SRC=h5ls.c
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PROG_OBJ=$(PROG_SRC:.c=.lo)
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PRIVATE_HDR=
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## Source and object files for the tests
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TEST_SRC=
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TEST_OBJ=$(TEST_SRC:.c=.lo)
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## Programs have to be built before they can be tested!
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check test _test: $(PROGS)
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## How to build the programs... They all depend on the hdf5 library and
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## the tools library compiled in this directory.
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$(PROGS): $(LIBTOOLS) $(LIBHDF5)
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h5ls: h5ls.lo
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@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5ls.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
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@CONCLUDE@
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2166
tools/h5ls/h5ls.c
Normal file
2166
tools/h5ls/h5ls.c
Normal file
File diff suppressed because it is too large
Load Diff
143
tools/h5ls/testh5ls.sh
Executable file
143
tools/h5ls/testh5ls.sh
Executable file
@ -0,0 +1,143 @@
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#! /bin/sh
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#
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# Copyright (C) 2001 National Center for Supercomputing Applications
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# All rights reserved.
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#
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# Tests for the h5ls tool
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H5LS=h5ls # The tool name
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H5LS_BIN=`pwd`/$H5LS # The path of the tool binary
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CMP='cmp -s'
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DIFF='diff -c'
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NLINES=20 # Max. lines of output to display if test fails
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nerrors=0
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verbose=yes
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# The build (current) directory might be different than the source directory.
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if test -z "$srcdir"; then
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srcdir=.
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fi
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test -d ../testfiles || mkdir ../testfiles
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Testing".
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TESTING() {
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SPACES=" "
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echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
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}
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# Run a test and print PASS or *FAIL*. For now, if h5ls can complete
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# with exit status 0, consider it pass. If a test fails then increment
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# the `nerrors' global variable and (if $verbose is set) display up to $NLINS
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# lines of the actual output from the tool test. The actual output is not
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# removed if $HDF5_NOCLEANUP has a non-zero value.
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# Arguemnts:
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# $1 -- actual output filename to use
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# $2 and on -- argument for the h5ls tool
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TOOLTEST() {
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expect="$srcdir/../testfiles/$1"
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actual="../testfiles/`basename $1 .ls`.out"
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shift
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# Run test.
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# Stderr is included in stdout so that the diff can detect
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# any unexpected output from that stream too.
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TESTING $H5LS $@
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(
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echo "#############################"
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echo " output for '$H5LS $@'"
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echo "#############################"
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cd $srcdir/../testfiles
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$RUNSERIAL $H5LS_BIN "$@"
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) >$actual 2>&1
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exitcode=$?
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if [ $exitcode -ne 0 ]; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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if [ yes = "$verbose" ]; then
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echo "test returned with exit code $exitcode"
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echo "test output: (up to $NLINES lines)"
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head -$NLINES $actual
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echo "***end of test output***"
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echo ""
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fi
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elif [ ! -f $expect ]; then
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# Create the expect file if it doesn't yet exist.
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echo " CREATED"
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cp $actual $expect
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elif $CMP $expect $actual; then
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echo " PASSED"
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else
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echo "*FAILED*"
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echo " Expected result differs from actual result"
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
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fi
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# Clean up output file
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if test -z "$HDF5_NOCLEANUP"; then
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rm -f $actual
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fi
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}
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##############################################################################
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##############################################################################
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### T H E T E S T S ###
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##############################################################################
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##############################################################################
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# Toss in a bunch of tests. Not sure if they are the right kinds.
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# test the help syntax
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TOOLTEST help-1.ls -w80 -h
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TOOLTEST help-2.ls -w80 -help
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TOOLTEST help-3.ls -w80 -?
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# test simple command
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TOOLTEST tall-1.ls -w80 tall.h5
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TOOLTEST tall-2.ls -w80 -r -d tall.h5
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TOOLTEST tgroup.ls -w80 tgroup.h5
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# test for displaying groups
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TOOLTEST tgroup-1.ls -w80 -r -g tgroup.h5
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# test for displaying simple space datasets
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TOOLTEST tdset-1.ls -w80 -r -d tdset.h5
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# test for displaying soft links
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TOOLTEST tslink-1.ls -w80 -r tslink.h5
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# tests for hard links
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TOOLTEST thlink-1.ls -w80 thlink.h5
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# tests for compound data types
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TOOLTEST tcomp-1.ls -w80 -r -d tcompound.h5
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#test for the nested compound type
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TOOLTEST tnestcomp-1.ls -w80 -r -d tnestedcomp.h5
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# test for loop detection
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TOOLTEST tloop-1.ls -w80 -r -d tloop.h5
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# test for string
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TOOLTEST tstr-1.ls -w80 -r -d tstr.h5
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# test test file created from lib SAF team
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TOOLTEST tsaf.ls -w80 -r -d tsaf.h5
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# test for variable length data types
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TOOLTEST tvldtypes1.ls -w80 -r -d tvldtypes1.h5
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# test for array data types
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TOOLTEST tarray1.ls -w80 -r -d tarray1.h5
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# test for empty data
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TOOLTEST tempty.ls -w80 -d tempty.h5
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if test $nerrors -eq 0 ; then
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echo "All h5ls tests passed."
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fi
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exit $nerrors
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0
tools/h5toh4/Dependencies
Normal file
0
tools/h5toh4/Dependencies
Normal file
60
tools/h5toh4/Makefile.in
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60
tools/h5toh4/Makefile.in
Normal file
@ -0,0 +1,60 @@
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## HDF5 Library Makefile(.in)
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##
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## Copyright (C) 2001 National Center for Supercomputing Applications.
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## All rights reserved.
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##
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##
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top_srcdir=@top_srcdir@
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top_builddir=../..
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srcdir=@srcdir@
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SUBDIRS=
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@COMMENCE@
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## Add include directory to the C preprocessor flags, add -lh5tools and
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## -lhdf5 to the list of libraries.
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##
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CPPFLAGS=-I. -I$(srcdir) -I$(top_builddir)/src -I$(top_srcdir)/src \
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-I$(top_srcdir)/tools/lib @CPPFLAGS@
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## Test programs and scripts.
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##
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TEST_PROGS=
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TEST_SCRIPTS=@TESTH5TOH4@
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## These are our main targets: library and tools.
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##
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LIBTOOLS=../lib/libh5tools.la
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LIBHDF5=$(top_builddir)/src/libhdf5.la
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PUB_PROGS=@H5TOH4@
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PROGS=$(PUB_PROGS) $(TEST_PROGS)
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## Source and object files for the library; do not install
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||||
##
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LIB_SRC=
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LIB_OBJ=$(LIB_SRC:.c=.lo)
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PUB_LIB=
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## Source and object files for programs...
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||||
##
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PROG_SRC=h5toh4.c
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PROG_OBJ=$(PROG_SRC:.c=.lo)
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PRIVATE_HDR=h5toh4.h
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||||
## Source and object files for the tests
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||||
##
|
||||
TEST_SRC=
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TEST_OBJ=$(TEST_SRC:.c=.lo)
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|
||||
## Programs have to be built before they can be tested!
|
||||
##
|
||||
check test _test: $(PROGS)
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||||
|
||||
## How to build the programs... They all depend on the hdf5 library and
|
||||
## the tools library compiled in this directory.
|
||||
##
|
||||
$(PROGS): $(LIBTOOLS) $(LIBHDF5)
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||||
h5toh4: h5toh4.lo
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@$(LT_LINK_EXE) $(CFLAGS) -o $@ h5toh4.lo $(LIBTOOLS) $(LIBHDF5) $(LDFLAGS) $(LIBS)
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@CONCLUDE@
|
2592
tools/h5toh4/h5toh4.c
Normal file
2592
tools/h5toh4/h5toh4.c
Normal file
File diff suppressed because it is too large
Load Diff
43
tools/h5toh4/h5toh4.h
Normal file
43
tools/h5toh4/h5toh4.h
Normal file
@ -0,0 +1,43 @@
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/*
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* Copyright © 1998 NCSA
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* All rights reserved.
|
||||
*
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* Programmer: Paul Harten <pharten@ncsa.uiuc.edu>
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* Friday, October 16th, 1998
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*
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* Purpose: Convert H5 files to H4 files.
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*/
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#ifndef _H5TOH4_H
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#define _H5TOH4_H
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||||
#include "hdf.h"
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#include "mfhdf.h"
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#include "hdf5.h"
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#ifdef H5_HAVE_SYS_STAT_H
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# include <sys/stat.h>
|
||||
#endif
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|
||||
typedef struct op_data_t {
|
||||
/*
|
||||
* information being carried between iterations.
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||||
*
|
||||
*/
|
||||
|
||||
int32 hfile_id;
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int32 vgroup_id;
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int32 sd_id;
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int32 sds_id;
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||||
int32 vdata_id;
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||||
int32 obj_idx;
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||||
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||||
} op_data_t;
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|
||||
#ifdef H5TOH4_DEBUG
|
||||
#define DEBUG_PRINT(s1,s2,s3,n1) ( fprintf(stderr,s1,s2,s3,n1) )
|
||||
#else
|
||||
#define DEBUG_PRINT(s1,s2,s3,n1) ( fprintf(stderr," ") )
|
||||
#endif
|
||||
|
||||
#endif
|
299
tools/h5toh4/testh5toh4.sh
Executable file
299
tools/h5toh4/testh5toh4.sh
Executable file
@ -0,0 +1,299 @@
|
||||
#! /bin/sh
|
||||
#
|
||||
# Copyright (C) 1997-2001 National Center for Supercomputing Applications.
|
||||
# All rights reserved.
|
||||
#
|
||||
|
||||
H5TOH4=h5toh4 # a relative name
|
||||
H5TOH4_BIN=`pwd`/$H5TOH4 # an absolute command path
|
||||
|
||||
cmp='cmp -s'
|
||||
diff='diff -c'
|
||||
|
||||
RM='rm -f'
|
||||
SED='sed '
|
||||
H4DUMP='hdp'
|
||||
|
||||
# Verify if $H4DUMP is a valid command.
|
||||
tmpfile=/tmp/testh5toh4.$$
|
||||
$H4DUMP -H > $tmpfile
|
||||
if test -s "$tmpfile"; then
|
||||
# Find out which version of hdp is being used. Over simplified
|
||||
# algorithm but will do the job for now.
|
||||
if ( grep -s 'NCSA HDF Version 4.1 Release [3-9]' $tmpfile > /dev/null )
|
||||
then
|
||||
H4DUMPVER=413
|
||||
else
|
||||
H4DUMPVER=0
|
||||
echo " Some tests maybe skipped because your version of $H4DUMP does"
|
||||
echo " not handle loops in Vgroups correctly. You need version"
|
||||
echo " 4.1 Release 3 or later. Visit http://hdf.ncsa.uiuc.edu"
|
||||
echo " or email hdfhelp@ncsa.uiuc.edu for more information."
|
||||
fi
|
||||
else
|
||||
echo " Could not run the '$H4DUMP' command. The test can still proceed"
|
||||
echo " but it may fail if '$H4DUMP' is needed to verify the output."
|
||||
echo " You can make sure '$H4DUMP' is among your shell PATH and run"
|
||||
echo " the test again. You may also visit http://hdf.ncsa.uiuc.edu"
|
||||
echo " or email hdfhelp@ncsa.uiuc.edu for more information."
|
||||
H4DUMP=:
|
||||
H4DUMPVER=0
|
||||
fi
|
||||
$RM $tmpfile
|
||||
|
||||
# The build (current) directory might be different than the source directory.
|
||||
if test -z "$srcdir"; then
|
||||
srcdir=.
|
||||
fi
|
||||
mkdir ../testfiles >/dev/null 2>&1
|
||||
|
||||
SRCDIR="$srcdir/../testfiles"
|
||||
OUTDIR="../testfiles/Results"
|
||||
|
||||
test -d $OUTDIR || mkdir $OUTDIR
|
||||
|
||||
nerrors=0
|
||||
verbose=yes
|
||||
|
||||
# Print a line-line message left justified in a field of 70 characters
|
||||
# beginning with the word "Testing".
|
||||
TESTING() {
|
||||
SPACES=" "
|
||||
echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
|
||||
}
|
||||
|
||||
# Run a test and print PASS or *FAIL*. If a test fails then increment
|
||||
# the `nerrors' global variable and (if $verbose is set) display the
|
||||
# difference between the actual and the expected hdf4 files. The
|
||||
# expected hdf4 files are in testfiles/Expected directory.
|
||||
# The actual hdf4 file is not removed if $HDF5_NOCLEANUP is to a non-null
|
||||
# value.
|
||||
CONVERT() {
|
||||
# Run h5toh4 convert.
|
||||
TESTING $H5TOH4 $@
|
||||
|
||||
#
|
||||
# Set up arguments to run the conversion test.
|
||||
# The converter assumes all hdf5 files has the .h5 suffix as in the form
|
||||
# of foo.h5. It creates the corresponding hdf4 files with the .hdf suffix
|
||||
# as in the form of foo.hdf. One exception is that if exactly two file
|
||||
# names are given, it treats the first argument as an hdf5 file and creates
|
||||
# the corresponding hdf4 file with the name as the second argument, WITOUT
|
||||
# any consideration of the suffix. (For this test script, in order to
|
||||
# match the output hdf4 file with the expected hdf4 file, it expects the
|
||||
# second file of the two-files tests has the .hdf suffix too.)
|
||||
#
|
||||
# If SRCDIR != OUTDIR, need to copy the input hdf5 files from the SRCDIR
|
||||
# to the OUTDIR and transform the input file pathname because of the suffix
|
||||
# convention mentioned above. This way, the hdf4 files are always created
|
||||
# in the OUTDIR directory.
|
||||
#
|
||||
|
||||
INFILES=""
|
||||
OUTFILES=""
|
||||
MULTIRUN=""
|
||||
|
||||
case "$1" in
|
||||
"-m") # multiple files conversion
|
||||
MULTIRUN="-m"
|
||||
shift
|
||||
for f in $*
|
||||
do
|
||||
if test "$SRCDIR" != "$OUTDIR"; then
|
||||
cp $SRCDIR/$f $OUTDIR/$f
|
||||
fi
|
||||
INFILES="$INFILES $f"
|
||||
OUTFILES="$OUTFILES `basename $f .h5`.hdf"
|
||||
shift
|
||||
done
|
||||
;;
|
||||
* ) # Single file conversion
|
||||
case $# in
|
||||
1) if test "$SRCDIR" != "$OUTDIR"; then
|
||||
cp $SRCDIR/$1 $OUTDIR/$1
|
||||
fi
|
||||
INFILES="$1"
|
||||
OUTFILES="`basename $1 .h5`.hdf"
|
||||
;;
|
||||
2) # hdf4 file specified
|
||||
if test "$SRCDIR" != "$OUTDIR"; then
|
||||
cp $SRCDIR/$1 $OUTDIR/$1
|
||||
fi
|
||||
INFILES="$1"
|
||||
OUTFILES="$2"
|
||||
;;
|
||||
*) # Illegal
|
||||
echo "Illegal arguments"
|
||||
exit 1
|
||||
;;
|
||||
esac
|
||||
;;
|
||||
esac
|
||||
|
||||
# run the conversion and remove input files that have been copied over
|
||||
(
|
||||
cd $OUTDIR
|
||||
$H5TOH4_BIN $MULTIRUN $INFILES 2>/dev/null
|
||||
if test "$SRCDIR" != "$OUTDIR"; then
|
||||
$RM $INFILES
|
||||
fi
|
||||
)
|
||||
|
||||
# Verify results
|
||||
result="passed"
|
||||
for f in $OUTFILES
|
||||
do
|
||||
if $cmp $SRCDIR/Expected/$f $OUTDIR/$f
|
||||
then
|
||||
:
|
||||
else
|
||||
# Use hdp to dump the files and verify the output.
|
||||
# Filter out the output of "reference = ..." because
|
||||
# reference numbers are immaterial in general.
|
||||
outfile=`basename $f .hdf`
|
||||
expect_out=$outfile.expect
|
||||
actual_out=$outfile.actual
|
||||
|
||||
if [ $outfile = "tloop" -a $H4DUMPVER -lt 413 ]
|
||||
then
|
||||
echo " -SKIP-"
|
||||
result="skipped"
|
||||
touch $expect_out $actual_out # fake them
|
||||
else
|
||||
(cd $SRCDIR/Expected
|
||||
$H4DUMP dumpvg $outfile.hdf
|
||||
$H4DUMP dumpvd $outfile.hdf
|
||||
$H4DUMP dumpsds $outfile.hdf ) |
|
||||
sed -e 's/reference = [0-9]*;//' > $expect_out
|
||||
(cd $OUTDIR
|
||||
$H4DUMP dumpvg $outfile.hdf
|
||||
$H4DUMP dumpvd $outfile.hdf
|
||||
$H4DUMP dumpsds $outfile.hdf ) |
|
||||
sed -e 's/reference = [0-9]*;//' > $actual_out
|
||||
fi
|
||||
|
||||
if [ "passed" = $result -a ! -s $actual_out ] ; then
|
||||
echo "*FAILED*"
|
||||
nerrors="`expr $nerrors + 1`"
|
||||
result=failed
|
||||
test yes = "$verbose" &&
|
||||
echo " H4DUMP failed to produce valid output"
|
||||
elif $cmp $expect_out $actual_out; then
|
||||
:
|
||||
else
|
||||
if test "passed" = $result; then
|
||||
echo "*FAILED*"
|
||||
nerrors="`expr $nerrors + 1`"
|
||||
result=failed
|
||||
fi
|
||||
test yes = "$verbose" &&
|
||||
echo " Actual result (*.actual) differs from expected result (*.expect)" &&
|
||||
$diff $expect_out $actual_out |sed 's/^/ /'
|
||||
fi
|
||||
fi
|
||||
|
||||
# Clean up output file
|
||||
if test -z "$HDF5_NOCLEANUP"; then
|
||||
$RM $expect_out $actual_out
|
||||
$RM $OUTDIR/$f
|
||||
fi
|
||||
done
|
||||
if test "passed" = "$result"; then
|
||||
echo " PASSED"
|
||||
fi
|
||||
}
|
||||
|
||||
|
||||
|
||||
##############################################################################
|
||||
##############################################################################
|
||||
### T H E T E S T S ###
|
||||
##############################################################################
|
||||
##############################################################################
|
||||
|
||||
$RM $OUTDIR/*.hdf $OUTDIR/*.tmp
|
||||
|
||||
#
|
||||
# The HDF4 filenames are created based upon the HDF5 filenames
|
||||
# without the extension.
|
||||
#
|
||||
|
||||
# test for converting H5 groups to H4 Vgroups.
|
||||
CONVERT tgroup.h5
|
||||
|
||||
# test for converting H5 datasets to H4 SDS's.
|
||||
CONVERT tdset.h5
|
||||
|
||||
# test for converting H5 attributes to H4 attributes.
|
||||
CONVERT tattr.h5
|
||||
|
||||
# test for converting H5 soft links.
|
||||
CONVERT tslink.h5
|
||||
|
||||
# test for converting H5 hard links.
|
||||
CONVERT thlink.h5
|
||||
|
||||
# test for converting H5 compound data type to H4 Vdata.
|
||||
CONVERT tcompound.h5
|
||||
|
||||
# test for converting all H5 objects at in same file.
|
||||
CONVERT tall.h5
|
||||
|
||||
# tests for converting H5 objects with loops.
|
||||
CONVERT tloop.h5
|
||||
|
||||
# test for converting extendable H5 datasets to H4 SDS's.
|
||||
CONVERT tdset2.h5
|
||||
|
||||
# test for converting extendable H5 datasets with compound data type to H4 Vdata.
|
||||
CONVERT tcompound2.h5
|
||||
|
||||
# tests for converting H5 objects from many different pathways.
|
||||
CONVERT tmany.h5
|
||||
|
||||
# tests for converting H5 string objects.
|
||||
CONVERT tstr.h5
|
||||
|
||||
# tests for converting more H5 string objects.
|
||||
CONVERT tstr2.h5
|
||||
|
||||
#
|
||||
# The test for conversion are the same as above with the only difference
|
||||
# being that the HDF4 filenames are given explicitly.
|
||||
#
|
||||
|
||||
$RM $OUTDIR/*.tmp
|
||||
CONVERT tgroup.h5 tgroup.hdf
|
||||
CONVERT tdset.h5 tdset.hdf
|
||||
CONVERT tattr.h5 tattr.hdf
|
||||
CONVERT tslink.h5 tslink.hdf
|
||||
CONVERT thlink.h5 thlink.hdf
|
||||
CONVERT tcompound.h5 tcompound.hdf
|
||||
CONVERT tall.h5 tall.hdf
|
||||
CONVERT tloop.h5 tloop.hdf
|
||||
CONVERT tdset2.h5 tdset2.hdf
|
||||
CONVERT tcompound2.h5 tcompound2.hdf
|
||||
CONVERT tmany.h5 tmany.hdf
|
||||
CONVERT tstr.h5 tstr.hdf
|
||||
CONVERT tstr2.h5 tstr2.hdf
|
||||
|
||||
#
|
||||
# Again, the test for conversion are the same as the first set of test.
|
||||
# Here, multiple conversion are done on HDF5 files at one time.
|
||||
#
|
||||
|
||||
$RM $OUTDIR/*.hdf $OUTDIR/*.tmp
|
||||
CONVERT -m tgroup.h5 tdset.h5 tattr.h5 tslink.h5 thlink.h5
|
||||
CONVERT -m tcompound.h5 tall.h5
|
||||
CONVERT -m tloop.h5
|
||||
CONVERT -m tdset2.h5 tcompound2.h5 tmany.h5
|
||||
CONVERT -m tstr.h5 tstr2.h5
|
||||
|
||||
if test $nerrors -eq 0 ; then
|
||||
echo "All h5toh4 tests passed."
|
||||
fi
|
||||
|
||||
if test -z "$HDF5_NOCLEANUP"; then
|
||||
$RM -r $OUTDIR
|
||||
fi
|
||||
exit $nerrors
|
Loading…
Reference in New Issue
Block a user