Purge the buffer used in type conversion. (#263)

Some of the uniniitialized bits in the buffer may get carried through
all the way to disk, creating a risk for leaks.

We observed an msan error during the floating point output conversion.
Due to the encoding certain bits could remain untouched during the conversion.

In this draft we zero initialize the dbuf used by every convertor.
This commit is contained in:
Yu Feng 2021-03-19 06:32:05 -07:00 committed by GitHub
parent dafc7285bb
commit 1c8b3dbe4d
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@ -1668,7 +1668,7 @@ H5T__conv_b_b(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, siz
size_t olap; /*num overlapping elements */
size_t half_size; /*1/2 of total size for swapping*/
uint8_t * s, *sp, *d, *dp; /*source and dest traversal ptrs*/
uint8_t dbuf[256]; /*temp destination buffer */
uint8_t dbuf[256] = {0}; /*temp destination buffer */
size_t msb_pad_offset; /*offset for dest MSB padding */
size_t i;
uint8_t * src_rev = NULL; /*order-reversed source buffer */
@ -3844,7 +3844,7 @@ H5T__conv_i_i(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, siz
size_t olap; /*num overlapping elements */
uint8_t * s, *sp, *d, *dp; /*source and dest traversal ptrs*/
uint8_t * src_rev = NULL; /*order-reversed source buffer */
uint8_t dbuf[64]; /*temp destination buffer */
uint8_t dbuf[64] = {0}; /*temp destination buffer */
size_t first;
ssize_t sfirst; /*a signed version of `first' */
size_t i; /*Local index variables */
@ -4287,7 +4287,7 @@ H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, siz
ssize_t bitno = 0; /*bit number */
uint8_t * s, *sp, *d, *dp; /*source and dest traversal ptrs*/
uint8_t * src_rev = NULL; /*order-reversed source buffer */
uint8_t dbuf[64]; /*temp destination buffer */
uint8_t dbuf[64] = {0}; /*temp destination buffer */
uint8_t tmp1, tmp2; /*temp variables for swapping bytes*/
/* Conversion-related variables */
@ -4947,7 +4947,7 @@ H5T__conv_s_s(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, siz
dst_delta = (ssize_t)direction * (ssize_t)(buf_stride ? buf_stride : dst->shared->size);
/* Allocate the overlap buffer */
if (NULL == (dbuf = (uint8_t *)H5MM_malloc(dst->shared->size)))
if (NULL == (dbuf = (uint8_t *)H5MM_calloc(dst->shared->size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for string conversion")
/* The conversion loop. */
@ -8402,7 +8402,7 @@ H5T__conv_f_i(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, siz
size_t olap; /*num overlapping elements */
uint8_t * s, *sp, *d, *dp; /*source and dest traversal ptrs*/
uint8_t * src_rev = NULL; /*order-reversed source buffer */
uint8_t dbuf[64]; /*temp destination buffer */
uint8_t dbuf[64] = {0}; /*temp destination buffer */
uint8_t tmp1, tmp2; /*temp variables for swapping bytes*/
/* Conversion-related variables */
@ -9028,7 +9028,7 @@ H5T__conv_i_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, siz
size_t olap; /*num overlapping elements */
uint8_t * s, *sp, *d, *dp; /*source and dest traversal ptrs*/
uint8_t * src_rev = NULL; /*order-reversed source buffer */
uint8_t dbuf[64]; /*temp destination buffer */
uint8_t dbuf[64] = {0}; /*temp destination buffer */
uint8_t tmp1, tmp2; /*temp variables for swapping bytes*/
/* Conversion-related variables */