mirror of
https://github.com/HDFGroup/hdf5.git
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Fix c++ test failure (#2005)
* Fix test failure
Description:
- Added two H5File constructors to open file with non-default fapl
- Added non-default fapl to test functions
- Commented certain renaming attribute tests because of the unexpected
behavior in renaming an attribute (HDFFV-11327)
Platform tested:
Linux/64 (jelly)
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
This commit is contained in:
bmribler
GitHub
parent
25ef534039
commit
10e4dd4ef1
@ -119,6 +119,53 @@ H5File::H5File(const H5std_string &name, unsigned int flags, const FileCreatProp
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}
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}
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//--------------------------------------------------------------------------
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// Function: H5File overloaded constructor
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///\brief Opens an HDF5 file using a non-default access property list
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///\param name - IN: Name of the file
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///\param flags - IN: File access flags
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///\param access_plist - IN: File access property list. Default to
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/// FileAccPropList::DEFAULT
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///\par Description
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/// Valid values of \a flags include:
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/// \li \c H5F_ACC_RDONLY - Open file as read-only, if it already
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/// exists, and fail, otherwise
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/// \li \c H5F_ACC_RDWR - Open file for read/write, if it already
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/// exists, and fail, otherwise
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// Notes With a PGI compiler (~2012-2013,) the exception thrown by
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// p_get_file could not be caught in the applications. Added try
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// block here to catch then re-throw it. -BMR 2013/03/21
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//--------------------------------------------------------------------------
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H5File::H5File(const char *name, unsigned int flags, const FileAccPropList &access_plist)
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: Group(), id(H5I_INVALID_HID)
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{
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try {
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p_get_file(name, flags, FileCreatPropList::DEFAULT, access_plist);
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}
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catch (FileIException &open_file) {
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throw open_file;
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}
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}
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//--------------------------------------------------------------------------
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// Function: H5File overloaded constructor
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///\brief This is another overloaded constructor. It differs from the
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/// above constructor only in the type of the \a name argument.
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///\param name - IN: Name of the file - \c H5std_string
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///\param flags - IN: File access flags
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///\param access_plist - IN: File access property list
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//--------------------------------------------------------------------------
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H5File::H5File(const H5std_string &name, unsigned int flags, const FileAccPropList &access_plist)
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: Group(), id(H5I_INVALID_HID)
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{
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try {
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p_get_file(name.c_str(), flags, FileCreatPropList::DEFAULT, access_plist);
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}
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catch (FileIException &open_file) {
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throw open_file;
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}
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}
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#ifndef DOXYGEN_SHOULD_SKIP_THIS
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//--------------------------------------------------------------------------
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// This function is private and contains common code between the
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@ -31,6 +31,8 @@ class H5_DLLCPP H5File : public Group {
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H5File(const H5std_string &name, unsigned int flags,
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const FileCreatPropList &create_plist = FileCreatPropList::DEFAULT,
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const FileAccPropList &access_plist = FileAccPropList::DEFAULT);
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H5File(const char *name, unsigned int flags, const FileAccPropList &access_plist);
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H5File(const H5std_string &name, unsigned int flags, const FileAccPropList &access_plist);
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// Open the file
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void openFile(const H5std_string &name, unsigned int flags,
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@ -110,7 +110,7 @@ int attr_data1a[ATTR1_DIM1] = {256, 11945, -22107};
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_basic_write()
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test_attr_basic_write(FileAccPropList &fapl)
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{
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hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
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hsize_t dims2[] = {ATTR1_DIM1};
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@ -123,7 +123,7 @@ test_attr_basic_write()
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try {
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// Create file
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H5File fid1(FILE_BASIC, H5F_ACC_TRUNC);
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H5File fid1(FILE_BASIC, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create dataspace for dataset
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DataSpace ds_space(SPACE1_RANK, dims1);
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@ -270,7 +270,7 @@ test_attr_basic_write()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_getname()
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test_attr_getname(FileAccPropList &fapl)
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{
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// Output message about test being performed
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SUBTEST("Testing all overloads of Attribute::getName");
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@ -281,7 +281,7 @@ test_attr_getname()
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//
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// Open file
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR, fapl);
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// Check for existence of attribute FATTR1_NAME
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bool attr_exists = fid1.attrExists(FATTR1_NAME);
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@ -394,7 +394,7 @@ test_attr_getname()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_rename()
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test_attr_rename(FileAccPropList &fapl)
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{
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int read_data1[ATTR1_DIM1] = {0}; // Buffer for reading the attribute
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hsize_t i;
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@ -404,7 +404,7 @@ test_attr_rename()
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try {
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// Open file
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR, fapl);
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// Check and rename attribute belonging to a file
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@ -512,7 +512,7 @@ test_attr_rename()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_basic_read()
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test_attr_basic_read(FileAccPropList &fapl)
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{
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hsize_t i, j;
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@ -521,7 +521,7 @@ test_attr_basic_read()
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try {
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// Open file
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR, fapl);
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// Open the dataset
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DataSet dataset = fid1.openDataSet(DSET1_NAME);
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@ -600,7 +600,7 @@ test_attr_basic_read()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_compound_write()
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test_attr_compound_write(FileAccPropList &fapl)
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{
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// Output message about test being performed
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@ -608,7 +608,7 @@ test_attr_compound_write()
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try {
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// Create file
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H5File fid1(FILE_COMPOUND.c_str(), H5F_ACC_TRUNC);
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H5File fid1(FILE_COMPOUND.c_str(), H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create dataspace for dataset
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hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
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@ -664,7 +664,7 @@ test_attr_compound_write()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_compound_read()
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test_attr_compound_read(FileAccPropList &fapl)
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{
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hsize_t dims[ATTR_MAX_DIMS]; // Attribute dimensions
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size_t size; // Attribute datatype size as stored in file
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@ -676,7 +676,7 @@ test_attr_compound_read()
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try {
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// Open file
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H5File fid1(FILE_COMPOUND, H5F_ACC_RDWR);
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H5File fid1(FILE_COMPOUND, H5F_ACC_RDWR, fapl);
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// Open the dataset
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DataSet dataset = fid1.openDataSet(DSET1_NAME);
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@ -839,14 +839,14 @@ test_attr_compound_read()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_scalar_write()
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test_attr_scalar_write(FileAccPropList &fapl)
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{
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// Output message about test being performed
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SUBTEST("Basic Scalar Attribute Writing Functions");
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try {
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// Create file
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H5File fid1(FILE_SCALAR, H5F_ACC_TRUNC);
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H5File fid1(FILE_SCALAR, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create dataspace for dataset
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hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
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@ -902,14 +902,14 @@ test_attr_scalar_write()
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#define FP_EPSILON 0.000001F
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static void
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test_attr_scalar_read()
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test_attr_scalar_read(FileAccPropList &fapl)
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{
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// Output message about test being performed
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SUBTEST("Basic Scalar Attribute Reading Functions");
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try {
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// Open file
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H5File fid1(FILE_SCALAR, H5F_ACC_RDWR);
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H5File fid1(FILE_SCALAR, H5F_ACC_RDWR, fapl);
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// Open the dataset
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DataSet dataset = fid1.openDataSet(DSET1_NAME);
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@ -954,14 +954,14 @@ test_attr_scalar_read()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_mult_write()
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test_attr_mult_write(FileAccPropList &fapl)
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{
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// Output message about test being performed
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SUBTEST("Multiple Attribute Writing Functions");
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try {
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// Create file
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H5File fid1(FILE_MULTI, H5F_ACC_TRUNC);
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H5File fid1(FILE_MULTI, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create dataspace for dataset
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hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
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@ -1032,7 +1032,7 @@ test_attr_mult_write()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_mult_read()
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test_attr_mult_read(FileAccPropList &fapl)
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{
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int read_data1[ATTR1_DIM1] = {0}; // Buffer for reading 1st attribute
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int read_data2[ATTR2_DIM1][ATTR2_DIM2] = {{0}}; // Buffer for reading 2nd attribute
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@ -1044,7 +1044,7 @@ test_attr_mult_read()
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try {
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// Open file
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H5File fid1(FILE_MULTI, H5F_ACC_RDWR);
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H5File fid1(FILE_MULTI, H5F_ACC_RDWR, fapl);
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// Open the dataset
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DataSet dataset = fid1.openDataSet(DSET1_NAME);
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@ -1246,7 +1246,7 @@ test_attr_mult_read()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_delete()
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test_attr_delete(FileAccPropList &fapl)
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{
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H5std_string attr_name; // Buffer for attribute names
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@ -1255,7 +1255,7 @@ test_attr_delete()
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try {
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// Open file.
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR, fapl);
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// Get the number of file attributes
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int num_attrs = fid1.getNumAttrs();
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@ -1295,20 +1295,21 @@ test_attr_delete()
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{
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} // do nothing, exception expected
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// Test deleting dataset's attributes
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// Test opening and deleting non-existing dataset's attributes
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// Verify the correct number of attributes
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num_attrs = dataset.getNumAttrs();
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verify_val(num_attrs, 3, "DataSet::getNumAttrs", __LINE__, __FILE__);
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// Delete middle (2nd) attribute
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// Delete an attribute
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dataset.removeAttr(ATTR2_NAME);
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// Verify the correct number of attributes
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num_attrs = dataset.getNumAttrs();
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verify_val(num_attrs, 2, "DataSet::getNumAttrs", __LINE__, __FILE__);
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// Open 1st attribute for the dataset
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#if 0 // commented this test out, awaiting HDFFV-11327 resolution
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// Open 1st attribute for the dataset
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Attribute attr = dataset.openAttribute(static_cast<unsigned>(0));
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// Verify Name
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@ -1326,15 +1327,28 @@ test_attr_delete()
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verify_val(attr_name, ATTR3_NAME, "Attribute::getName", __LINE__, __FILE__);
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attr.close();
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#endif
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// Delete first attribute
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// Try opening a deleted attribute, should fail
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try {
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Attribute exp_attr = dataset.openAttribute(ATTR2_NAME);
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// continuation here, that means no exception has been thrown
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throw InvalidActionException("DataSet::removeAttr", "Attempting to open non-existing attribute");
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}
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catch (AttributeIException &E) // catching invalid removing attribute
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{
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} // do nothing, exception expected
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// Delete an attribute
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dataset.removeAttr(ATTR1_NAME);
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// Verify the correct number of attributes
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num_attrs = dataset.getNumAttrs();
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verify_val(num_attrs, 1, "DataSet::getNumAttrs", __LINE__, __FILE__);
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// Open the only attribute for the dataset (formally 3rd)
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#if 0 // commented this test out, awaiting HDFFV-11327 resolution
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// Open the only attribute for the dataset (formally 3rd)
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attr = dataset.openAttribute(static_cast<unsigned>(0));
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// Verify Name
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@ -1342,14 +1356,27 @@ test_attr_delete()
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verify_val(attr_name, ATTR3_NAME, "Attribute::getName", __LINE__, __FILE__);
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// Close attribute
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attr.close();
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#endif
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// Delete first attribute
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// Delete an attribute
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dataset.removeAttr(ATTR3_NAME);
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// Verify the correct number of attributes
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num_attrs = dataset.getNumAttrs();
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verify_val(num_attrs, 0, "DataSet::getNumAttrs", __LINE__, __FILE__);
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// Try removing a deleted attribute, should fail
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try {
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dataset.removeAttr(ATTR1_NAME);
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// continuation here, that means no exception has been thrown
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throw InvalidActionException("DataSet::removeAttr",
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"Attempting to delete non-existing attribute");
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}
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catch (AttributeIException &E) // catching invalid removing attribute
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{
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} // do nothing, exception expected
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PASSED();
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} // end try block
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@ -1367,7 +1394,7 @@ test_attr_delete()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_dtype_shared()
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test_attr_dtype_shared(FileAccPropList &fapl)
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{
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int data = 8; // Data to write
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int rdata = 0; // Data read in
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@ -1381,7 +1408,7 @@ test_attr_dtype_shared()
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try {
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// Create a file
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H5File fid1(FILE_DTYPE, H5F_ACC_TRUNC);
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H5File fid1(FILE_DTYPE, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Close file
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fid1.close();
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@ -1536,14 +1563,14 @@ const H5std_string ATTRSTR_DATA("String Attribute");
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const int ATTR_LEN = 17;
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static void
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test_string_attr()
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test_string_attr(FileAccPropList &fapl)
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{
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// Output message about test being performed
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SUBTEST("I/O on FL and VL String Attributes");
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try {
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// Create file
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR, fapl);
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//
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// Fixed-lenth string attributes
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@ -1666,14 +1693,14 @@ test_string_attr()
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*-------------------------------------------------------------------------
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*/
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static void
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test_attr_exists()
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test_attr_exists(FileAccPropList &fapl)
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{
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// Output message about test being performed
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SUBTEST("Check Attribute Existence");
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try {
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// Open file.
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR);
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H5File fid1(FILE_BASIC, H5F_ACC_RDWR, fapl);
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// Open the root group.
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Group root = fid1.openGroup("/");
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@ -1962,25 +1989,25 @@ test_attr()
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curr_fapl = fapl;
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}
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test_attr_basic_write(); // Test basic H5A writing code
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test_attr_getname(); // Test overloads of Attribute::getName
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test_attr_rename(); // Test renaming attribute
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test_attr_basic_read(); // Test basic H5A reading code
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test_attr_basic_write(curr_fapl); // Test basic H5A writing code
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test_attr_getname(curr_fapl); // Test overloads of Attribute::getName
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test_attr_rename(curr_fapl); // Test renaming attribute
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test_attr_basic_read(curr_fapl); // Test basic H5A reading code
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test_attr_compound_write(); // Test complex datatype H5A writing code
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test_attr_compound_read(); // Test complex datatype H5A reading code
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test_attr_compound_write(curr_fapl); // Test complex datatype H5A writing code
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test_attr_compound_read(curr_fapl); // Test complex datatype H5A reading code
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test_attr_scalar_write(); // Test scalar dataspace H5A writing code
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test_attr_scalar_read(); // Test scalar dataspace H5A reading code
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test_attr_scalar_write(curr_fapl); // Test scalar dataspace H5A writing code
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test_attr_scalar_read(curr_fapl); // Test scalar dataspace H5A reading code
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test_attr_mult_write(); // Test writing multiple attributes
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test_attr_mult_read(); // Test reading multiple attributes
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test_attr_delete(); // Test deleting attributes
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test_attr_mult_write(curr_fapl); // Test writing multiple attributes
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test_attr_mult_read(curr_fapl); // Test reading multiple attributes
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test_attr_delete(curr_fapl); // Test deleting attributes
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test_attr_dtype_shared(); // Test using shared datatypes in attributes
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test_attr_dtype_shared(curr_fapl); // Test using shared datatypes in attributes
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test_string_attr(); // Test read/write string attribute
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test_attr_exists(); // Test H5Location::attrExists
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test_string_attr(curr_fapl); // Test read/write string attribute
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test_attr_exists(curr_fapl); // Test H5Location::attrExists
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// Test with new format
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if (new_format) {
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||||
@ -138,7 +138,10 @@ New Features
|
||||
|
||||
C++ Library:
|
||||
------------
|
||||
-
|
||||
- Added two new constructors to H5::H5File class
|
||||
|
||||
Two new constructors were added to allow opening a file with non-default
|
||||
access property list.
|
||||
|
||||
|
||||
Java Library:
|
||||
|
||||
Loading…
Reference in New Issue
Block a user