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Add python testing for examples (#4628)
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Allen Byrne
GitHub
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commit
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@ -1,97 +0,0 @@
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#
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# Copyright by The HDF Group.
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# All rights reserved.
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#
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# This file is part of HDF5. The full HDF5 copyright notice, including
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# terms governing use, modification, and redistribution, is contained in
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# the COPYING file, which can be found at the root of the source code
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# distribution tree, or in https://www.hdfgroup.org/licenses.
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# If you do not have access to either file, you may request a copy from
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# help@hdfgroup.org.
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#
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##############################################################################
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##############################################################################
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### T E S T I N G ###
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##############################################################################
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##############################################################################
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file (MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/red ${PROJECT_BINARY_DIR}/blue ${PROJECT_BINARY_DIR}/u2w)
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set (test_ex_CLEANFILES
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Attributes.h5
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btrees_file.h5
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cmprss.h5
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default_file.h5
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dset.h5
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extend.h5
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extlink_prefix_source.h5
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extlink_source.h5
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extlink_target.h5
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group.h5
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groups.h5
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hard_link.h5
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mount1.h5
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mount2.h5
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one_index_file.h5
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only_dspaces_and_attrs_file.h5
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only_huge_mesgs_file.h5
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REF_REG.h5
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refere.h5
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refer_deprec.h5
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refer_extern1.h5
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refer_extern2.h5
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SDS.h5
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SDScompound.h5
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SDSextendible.h5
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Select.h5
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separate_indexes_file.h5
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small_lists_file.h5
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soft_link.h5
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subset.h5
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unix2win.h5
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blue/prefix_target.h5
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red/prefix_target.h5
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u2w/u2w_target.h5
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)
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if (HDF5_TEST_SERIAL)
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# Remove any output file left over from previous test run
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add_test (
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NAME EXAMPLES-clear-objects
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COMMAND ${CMAKE_COMMAND} -E remove ${test_ex_CLEANFILES}
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)
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set_tests_properties (EXAMPLES-clear-objects PROPERTIES
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FIXTURES_SETUP clear_EXAMPLES
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WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
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)
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add_test (
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NAME EXAMPLES-clean-objects
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COMMAND ${CMAKE_COMMAND} -E remove ${test_ex_CLEANFILES}
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)
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set_tests_properties (EXAMPLES-clean-objects PROPERTIES
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FIXTURES_CLEANUP clear_EXAMPLES
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WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
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)
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foreach (example ${examples})
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if (HDF5_USING_ANALYSIS_TOOL)
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add_test (NAME EXAMPLES-${example} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:${example}>)
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else ()
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add_test (NAME EXAMPLES-${example} COMMAND "${CMAKE_COMMAND}"
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-D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
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-D "TEST_PROGRAM=$<TARGET_FILE:${example}>"
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-D "TEST_ARGS:STRING="
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-D "TEST_EXPECT=0"
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-D "TEST_SKIP_COMPARE=TRUE"
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-D "TEST_OUTPUT=${example}.txt"
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-D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
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-P "${HDF_RESOURCES_DIR}/runTest.cmake"
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)
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endif ()
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set_tests_properties (EXAMPLES-${example} PROPERTIES FIXTURES_REQUIRED clear_EXAMPLES)
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if (last_test)
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set_tests_properties (EXAMPLES-${example} PROPERTIES DEPENDS ${last_test})
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endif ()
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set (last_test "EXAMPLES-${example}")
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endforeach ()
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endif ()
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@ -27,6 +27,11 @@ if (NOT EXAMPLES_EXTERNALLY_CONFIGURED)
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#-----------------------------------------------------------------------------
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HDF5_SUPPORT (TRUE)
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APIVersion(${HDF5_VERSION} H5_LIBVER_DIR)
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#-----------------------------------------------------------------------------
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# Python support check
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#-----------------------------------------------------------------------------
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PYTHON_SUPPORT ()
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endif ()
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message (STATUS "HDF5 link libs: ${H5EX_HDF5_LINK_LIBS}")
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message (STATUS "HDF5 H5_LIBVER_DIR: ${H5_LIBVER_DIR} HDF5_VERSION_MAJOR: ${HDF5_VERSION_MAJOR}")
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@ -230,4 +235,7 @@ endif ()
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if (HDF_BUILD_CPP_LIB AND HDF5_BUILD_CPP_LIB)
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add_subdirectory (CXX)
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endif ()
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if (HDF_BUILD_PYTHON)
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add_subdirectory (PYTHON)
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endif ()
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72
HDF5Examples/PYTHON/CMakeLists.txt
Normal file
72
HDF5Examples/PYTHON/CMakeLists.txt
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cmake_minimum_required (VERSION 3.18)
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project (HDF5Examples_PYTHON)
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#-----------------------------------------------------------------------------
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# Define Sources
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#-----------------------------------------------------------------------------
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include (Py_sourcefiles.cmake)
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if (H5EX_BUILD_TESTING)
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set (${EXAMPLE_VARNAME}_PY_CLEANFILES
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compound.h5
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dset.h5
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gzip.h5
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hype.h5
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links.h5
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objref.h5
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regref.h5
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copy1.h5
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copy2.h5
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string.h5
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unlim.h5
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vlstring.h5
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)
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# Remove any output file left over from previous test run
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add_test (
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NAME ${EXAMPLE_VARNAME}_PY-clear-objects
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COMMAND ${CMAKE_COMMAND} -E remove ${${EXAMPLE_VARNAME}_PY_CLEANFILES}
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)
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set_tests_properties (${EXAMPLE_VARNAME}_PY-clear-objects PROPERTIES
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FIXTURES_SETUP clear_${EXAMPLE_VARNAME}_PY
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WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
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)
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add_custom_target(${EXAMPLE_VARNAME}_PY-copy-objects ALL COMMENT "Copying Python source files")
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foreach (example_name ${examples})
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add_custom_command (
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TARGET ${EXAMPLE_VARNAME}_PY-copy-objects
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POST_BUILD
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COMMAND ${CMAKE_COMMAND}
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ARGS -E copy_if_different ${PROJECT_SOURCE_DIR}/${example_name}.py ${PROJECT_BINARY_DIR}/${example_name}.py
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)
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endforeach ()
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add_test (
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NAME ${EXAMPLE_VARNAME}_PY-clean-objects
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COMMAND ${CMAKE_COMMAND} -E remove ${${EXAMPLE_VARNAME}_PY_CLEANFILES}
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)
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set_tests_properties (${EXAMPLE_VARNAME}_PY-clean-objects PROPERTIES
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FIXTURES_CLEANUP clear_${EXAMPLE_VARNAME}_PY
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WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
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)
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macro (ADD_H5_TEST testname)
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if (NOT HDF5_USING_ANALYSIS_TOOL)
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add_test (
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NAME ${EXAMPLE_VARNAME}_PY_${testname}
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COMMAND ${Python3_EXECUTABLE} ${testname}.py
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WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
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)
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set_tests_properties (${EXAMPLE_VARNAME}_PY_${testname} PROPERTIES FIXTURES_REQUIRED clear_${EXAMPLE_VARNAME}_PY)
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if (last_test)
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set_tests_properties (${EXAMPLE_VARNAME}_PY_${testname} PROPERTIES DEPENDS ${last_test})
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endif ()
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set (last_test "${EXAMPLE_VARNAME}_PY_${testname}")
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endif ()
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endmacro ()
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foreach (example_name ${examples})
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ADD_H5_TEST (${example_name})
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endforeach ()
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endif ()
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20
HDF5Examples/PYTHON/Py_sourcefiles.cmake
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20
HDF5Examples/PYTHON/Py_sourcefiles.cmake
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#-----------------------------------------------------------------------------
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# Define Sources, one file per application
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#-----------------------------------------------------------------------------
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set (examples
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h5_compound
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h5_crtdat
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h5_gzip
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h5_hype
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h5_hypeb
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h5_links
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h5_objref
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h5_readtofloat
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h5_regref
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h5_selecelem
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h5_string
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h5_unlim
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h5_visit
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h5_visita
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h5_vlstring
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)
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@ -10,7 +10,7 @@ file = h5py.File('vlstring.h5','w')
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#
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# Create a dataset under the Root group using variable-length string type.
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#
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str_type = h5py.new_vlen(str)
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str_type = h5py.special_dtype(vlen=str)
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dataset = file.create_dataset("DSvariable",(4,), dtype=str_type)
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data = ("Parting", " is such", " sweet", " sorrow...")
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dataset[...] = data
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@ -22,7 +22,7 @@ file = h5py.File('vlstring.h5', 'r')
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dataset = file['DSvariable']
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data_out = dataset[...]
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for i in range(4):
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print("DSvariable[",i,"]", "'"+data_out[i]+"'", "has length", len(data_out[i]))
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print("DSvariable[",i,"]", "'"+data_out[i].decode('utf-8')+"'", "has length", len(data_out[i]))
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print(data_out)
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file.close()
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@ -105,6 +105,29 @@ macro (BASIC_SETTINGS varname)
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)
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endmacro ()
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macro (PYTHON_SUPPORT)
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option (HDF_BUILD_PYTHON "Test Python3 support" OFF)
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if (HDF_BUILD_PYTHON)
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find_package (Python3 COMPONENTS Interpreter Development NumPy)
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if (Python3_FOUND AND Python3_NumPy_FOUND)
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include (ExternalProject)
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EXTERNALPROJECT_ADD (h5py
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GIT_REPOSITORY https://github.com/h5py/h5py.git
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GIT_TAG master
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UPDATE_COMMAND ""
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PATCH_COMMAND ""
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CONFIGURE_COMMAND ""
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BUILD_COMMAND "${CMAKE_COMMAND}" -E env HDF5_DIR=${HDF5_ROOT} "${Python3_EXECUTABLE}" setup.py build
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BUILD_IN_SOURCE 1
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INSTALL_COMMAND python3 -m pip --no-cache-dir install -v .
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)
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else ()
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set (HDF_BUILD_PYTHON OFF CACHE BOOL "Test Python3 support" FORCE)
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message (STATUS "Python3:${Python3_FOUND} or numpy:${Python3_NumPy_FOUND} not found - disable test of Python examples")
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endif ()
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endif ()
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endmacro ()
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macro (HDF5_SUPPORT)
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set (CMAKE_MODULE_PATH ${H5EX_RESOURCES_DIR} ${CMAKE_MODULE_PATH})
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option (USE_SHARED_LIBS "Use Shared Libraries" ON)
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