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Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates

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This commit is contained in:
Quincey Koziol 2018-04-29 03:04:21 -05:00
commit 01f196b31a
1874 changed files with 154893 additions and 80527 deletions
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10
.autom4te.cfg
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@ -4,12 +4,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
## ------------------ ##
## User Preferences. ##

5
.gitattributes vendored
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@ -321,6 +321,7 @@ java/test/TestH5Dparams.java -text
java/test/TestH5Dplist.java -text
java/test/TestH5E.java -text
java/test/TestH5Edefault.java -text
java/test/TestH5Eparams.java -text
java/test/TestH5Eregister.java -text
java/test/TestH5F.java -text
java/test/TestH5Fbasic.java -text
@ -347,6 +348,7 @@ java/test/TestH5Sbasic.java -text
java/test/TestH5T.java -text
java/test/TestH5Tbasic.java -text
java/test/TestH5Tparams.java -text
java/test/TestUnit.java -text
java/test/TestH5Z.java -text
java/test/h5ex_g_iterate.orig -text svneol=unset#application/x-hdf
java/test/junit.sh.in -text
@ -726,7 +728,8 @@ tools/testfiles/tattrreg.h5 -text
tools/testfiles/tbigdims.h5 -text
tools/testfiles/tbinary.h5 -text
tools/testfiles/tbitfields.h5 -text
tools/testfiles/tbitnopaque.ddl -text
tools/testfiles/tbitnopaque_be.ddl -text
tools/testfiles/tbitnopaque_le.ddl -text
tools/testfiles/tbitnopaque.h5 -text svneol=unset#application/x-hdf
tools/testfiles/tchar.h5 -text
tools/testfiles/tcmpdattrintsize.h5 -text

1
.gitignore vendored
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@ -40,3 +40,4 @@ src/H5config.h.in
src/H5overflow.h
src/H5version.h
/.classpath

10
.h5chkright.ini
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@ -4,12 +4,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
# Initialization files for the Copyright Checker, chkcopyright.
# Each line is a keyword for action and the rest are values.

42
CMakeFilters.cmake
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@ -1,9 +1,20 @@
#
# Copyright by The HDF Group.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
include (ExternalProject)
#option (HDF5_ALLOW_EXTERNAL_SUPPORT "Allow External Library Building (NO GIT SVN TGZ)" "NO")
set (HDF5_ALLOW_EXTERNAL_SUPPORT "NO" CACHE STRING "Allow External Library Building (NO SVN TGZ)")
set_property (CACHE HDF5_ALLOW_EXTERNAL_SUPPORT PROPERTY STRINGS NO GIT SVN TGZ)
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "SVN" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
#option (HDF5_ALLOW_EXTERNAL_SUPPORT "Allow External Library Building (NO GIT TGZ)" "NO")
set (HDF5_ALLOW_EXTERNAL_SUPPORT "NO" CACHE STRING "Allow External Library Building (NO GIT TGZ)")
set_property (CACHE HDF5_ALLOW_EXTERNAL_SUPPORT PROPERTY STRINGS NO GIT TGZ)
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
option (ZLIB_USE_EXTERNAL "Use External Library Building for ZLIB" 1)
option (SZIP_USE_EXTERNAL "Use External Library Building for SZIP" 1)
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT")
@ -11,9 +22,6 @@ if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MAT
set (ZLIB_BRANCH ${ZLIB_GIT_BRANCH})
set (SZIP_URL ${SZIP_GIT_URL} CACHE STRING "Path to szip git repository")
set (SZIP_BRANCH ${SZIP_GIT_BRANCH})
elseif (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "SVN")
set (ZLIB_URL ${ZLIB_SVN_URL} CACHE STRING "Path to zlib Subversion repository")
set (SZIP_URL ${SZIP_SVN_URL} CACHE STRING "Path to szip Subversion repository")
elseif (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (NOT TGZPATH)
set (TGZPATH ${HDF5_SOURCE_DIR})
@ -37,8 +45,8 @@ if (HDF5_ENABLE_Z_LIB_SUPPORT)
if (NOT ZLIB_FOUND)
find_package (ZLIB) # Legacy find
if (ZLIB_FOUND)
set (LINK_LIBS ${LINK_LIBS} ${ZLIB_LIBRARIES})
set (LINK_SHARED_LIBS ${LINK_SHARED_LIBS} ${ZLIB_LIBRARIES})
set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${ZLIB_LIBRARIES})
set (LINK_COMP_SHARED_LIBS ${LINK_COMP_SHARED_LIBS} ${ZLIB_LIBRARIES})
endif ()
endif ()
endif ()
@ -50,7 +58,7 @@ if (HDF5_ENABLE_Z_LIB_SUPPORT)
set (ZLIB_INCLUDE_DIR_GEN ${ZLIB_INCLUDE_DIR})
set (ZLIB_INCLUDE_DIRS ${ZLIB_INCLUDE_DIRS} ${ZLIB_INCLUDE_DIR})
else ()
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "SVN" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
EXTERNAL_ZLIB_LIBRARY (${HDF5_ALLOW_EXTERNAL_SUPPORT})
set (H5_HAVE_FILTER_DEFLATE 1)
set (H5_HAVE_ZLIB_H 1)
@ -70,9 +78,9 @@ if (HDF5_ENABLE_Z_LIB_SUPPORT)
set (EXTERNAL_FILTERS "${EXTERNAL_FILTERS} DEFLATE")
endif ()
if (BUILD_SHARED_LIBS)
set (LINK_SHARED_LIBS ${LINK_SHARED_LIBS} ${ZLIB_SHARED_LIBRARY})
set (LINK_COMP_SHARED_LIBS ${LINK_COMP_SHARED_LIBS} ${ZLIB_SHARED_LIBRARY})
endif ()
set (LINK_LIBS ${LINK_LIBS} ${ZLIB_STATIC_LIBRARY})
set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${ZLIB_STATIC_LIBRARY})
INCLUDE_DIRECTORIES (${ZLIB_INCLUDE_DIRS})
message (STATUS "Filter ZLIB is ON")
endif ()
@ -88,8 +96,8 @@ if (HDF5_ENABLE_SZIP_SUPPORT)
if (NOT SZIP_FOUND)
find_package (SZIP) # Legacy find
if (SZIP_FOUND)
set (LINK_LIBS ${LINK_LIBS} ${SZIP_LIBRARIES})
set (LINK_SHARED_LIBS ${LINK_SHARED_LIBS} ${SZIP_LIBRARIES})
set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${SZIP_LIBRARIES})
set (LINK_COMP_SHARED_LIBS ${LINK_COMP_SHARED_LIBS} ${SZIP_LIBRARIES})
endif ()
endif ()
endif ()
@ -100,7 +108,7 @@ if (HDF5_ENABLE_SZIP_SUPPORT)
set (SZIP_INCLUDE_DIR_GEN ${SZIP_INCLUDE_DIR})
set (SZIP_INCLUDE_DIRS ${SZIP_INCLUDE_DIRS} ${SZIP_INCLUDE_DIR})
else ()
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "SVN" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
EXTERNAL_SZIP_LIBRARY (${HDF5_ALLOW_EXTERNAL_SUPPORT} ${HDF5_ENABLE_SZIP_ENCODING})
set (H5_HAVE_FILTER_SZIP 1)
set (H5_HAVE_SZLIB_H 1)
@ -111,9 +119,9 @@ if (HDF5_ENABLE_SZIP_SUPPORT)
endif ()
endif ()
if (BUILD_SHARED_LIBS)
set (LINK_SHARED_LIBS ${LINK_SHARED_LIBS} ${SZIP_SHARED_LIBRARY})
set (LINK_COMP_SHARED_LIBS ${LINK_COMP_SHARED_LIBS} ${SZIP_SHARED_LIBRARY})
endif ()
set (LINK_LIBS ${LINK_LIBS} ${SZIP_STATIC_LIBRARY})
set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${SZIP_STATIC_LIBRARY})
INCLUDE_DIRECTORIES (${SZIP_INCLUDE_DIRS})
message (STATUS "Filter SZIP is ON")
if (H5_HAVE_FILTER_SZIP)

51
CMakeInstallation.cmake
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@ -1,3 +1,14 @@
#
# Copyright by The HDF Group.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
include (CMakePackageConfigHelpers)
#-----------------------------------------------------------------------------
@ -12,16 +23,6 @@ if (WIN32)
find_program (WIX_EXECUTABLE candle PATHS "${CPACK_WIX_ROOT}/bin")
endif ()
#-----------------------------------------------------------------------------
# Add file(s) to CMake Install
#-----------------------------------------------------------------------------
if (NOT HDF5_INSTALL_NO_DEVELOPMENT)
install (
FILES ${PROJECT_BINARY_DIR}/H5pubconf.h
DESTINATION ${HDF5_INSTALL_INCLUDE_DIR}
COMPONENT headers
)
endif ()
#-----------------------------------------------------------------------------
# Add Target(s) to CMake Install for import into other projects
@ -30,7 +31,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
if (HDF5_EXPORTED_TARGETS)
install (
EXPORT ${HDF5_EXPORTED_TARGETS}
DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5
FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
NAMESPACE ${HDF5_PACKAGE}::
COMPONENT configinstall
@ -73,7 +74,7 @@ set (CURRENT_BUILD_DIR "${CMAKE_CURRENT_BINARY_DIR}" )
configure_package_config_file (
${HDF_RESOURCES_DIR}/hdf5-config.cmake.in
"${HDF5_BINARY_DIR}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake"
INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}"
INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}/hdf5"
PATH_VARS INCLUDE_INSTALL_DIR SHARE_INSTALL_DIR CURRENT_BUILD_DIR
INSTALL_PREFIX "${CMAKE_CURRENT_BINARY_DIR}"
)
@ -87,14 +88,14 @@ set (CURRENT_BUILD_DIR "${CMAKE_INSTALL_PREFIX}" )
configure_package_config_file (
${HDF_RESOURCES_DIR}/hdf5-config.cmake.in
"${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake"
INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}"
INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}/hdf5"
PATH_VARS INCLUDE_INSTALL_DIR SHARE_INSTALL_DIR CURRENT_BUILD_DIR
)
if (NOT HDF5_EXTERNALLY_CONFIGURED)
install (
FILES ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake
DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5
COMPONENT configinstall
)
endif ()
@ -109,7 +110,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
)
install (
FILES ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake
DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5
COMPONENT configinstall
)
endif ()
@ -132,24 +133,6 @@ install (
COMPONENT libraries
)
#-----------------------------------------------------------------------------
# Create pkgconfig files
#-----------------------------------------------------------------------------
#foreach (libs ${LINK_LIBS})
# set (LIBS "${LIBS} -l${libs}")
#endforeach ()
#foreach (libs ${HDF5_LIBRARIES_TO_EXPORT})
# set (HDF5LIBS "${HDF5LIBS} -l${libs}")
#endforeach ()
#configure_file (
# ${HDF_RESOURCES_DIR}/libhdf5.pc.in
# ${HDF5_BINARY_DIR}/CMakeFiles/libhdf5.pc @ONLY
#)
#install (
# FILES ${HDF5_BINARY_DIR}/CMakeFiles/libhdf5.pc
# DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig
#)
#-----------------------------------------------------------------------------
# Configure the HDF518_Examples.cmake file and the examples
#-----------------------------------------------------------------------------
@ -467,7 +450,7 @@ The HDF5 data model, file format, API, library, and tools are open and distribut
set (CPACK_INSTALL_CMAKE_PROJECTS "${HDF5_BINARY_DIR};HDF5;ALL;/")
if (HDF5_PACKAGE_EXTLIBS)
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "SVN" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL)
if (WIN32)
set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;ALL;/")

221
CMakeLists.txt
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@ -1,5 +1,5 @@
cmake_minimum_required (VERSION 3.2.2)
PROJECT (HDF5 C CXX)
cmake_minimum_required (VERSION 3.10)
project (HDF5 C)
#-----------------------------------------------------------------------------
# Instructions for use : Normal Build
@ -199,51 +199,6 @@ set (HDF5_JAVA_LOGGING_JAR ${HDF5_SOURCE_DIR}/java/lib/slf4j-api-1.7.5.j
set (HDF5_JAVA_LOGGING_NOP_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-nop-1.7.5.jar)
set (HDF5_JAVA_LOGGING_SIMPLE_JAR ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-simple-1.7.5.jar)
if (APPLE)
option (HDF5_BUILD_FRAMEWORKS "TRUE to build as frameworks libraries, FALSE to build according to BUILD_SHARED_LIBS" FALSE)
endif ()
if (NOT HDF5_INSTALL_BIN_DIR)
set (HDF5_INSTALL_BIN_DIR bin)
endif ()
if (NOT HDF5_INSTALL_LIB_DIR)
if (APPLE)
if (HDF5_BUILD_FRAMEWORKS)
set (HDF5_INSTALL_JAR_DIR ../Java)
else ()
set (HDF5_INSTALL_JAR_DIR lib)
endif ()
set (HDF5_INSTALL_FMWK_DIR ${CMAKE_INSTALL_FRAMEWORK_PREFIX})
else ()
set (HDF5_INSTALL_JAR_DIR lib)
endif ()
set (HDF5_INSTALL_LIB_DIR lib)
endif ()
if (NOT HDF5_INSTALL_INCLUDE_DIR)
set (HDF5_INSTALL_INCLUDE_DIR include)
endif ()
if (NOT HDF5_INSTALL_DATA_DIR)
if (NOT WIN32)
if (APPLE)
if (HDF5_BUILD_FRAMEWORKS)
set (HDF5_INSTALL_EXTRA_DIR ../SharedSupport)
else ()
set (HDF5_INSTALL_EXTRA_DIR share)
endif ()
set (HDF5_INSTALL_FWRK_DIR ${CMAKE_INSTALL_FRAMEWORK_PREFIX})
endif ()
set (HDF5_INSTALL_DATA_DIR share)
set (HDF5_INSTALL_CMAKE_DIR share/cmake)
else ()
set (HDF5_INSTALL_DATA_DIR ".")
set (HDF5_INSTALL_CMAKE_DIR cmake)
endif ()
endif ()
if (DEFINED ADDITIONAL_CMAKE_PREFIX_PATH AND EXISTS "${ADDITIONAL_CMAKE_PREFIX_PATH}")
set (CMAKE_PREFIX_PATH ${ADDITIONAL_CMAKE_PREFIX_PATH} ${CMAKE_PREFIX_PATH})
endif ()
#-----------------------------------------------------------------------------
# parse the full version number from H5public.h and include in H5_VERS_INFO
#-----------------------------------------------------------------------------
@ -263,13 +218,13 @@ string (REGEX REPLACE ".*#define[ \t]+H5_VERS_SUBRELEASE[ \t]+\"([0-9A-Za-z._]*)
#-----------------------------------------------------------------------------
file (READ ${HDF5_SOURCE_DIR}/config/lt_vers.am _lt_vers_am_contents)
string (REGEX REPLACE ".*LT_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$"
"\\1" H5_SOVERS_INTERFACE ${_lt_vers_am_contents})
"\\1" H5_LIB_SOVERS_INTERFACE ${_lt_vers_am_contents})
string (REGEX REPLACE ".*LT_VERS_REVISION[ \t]+=[ \t]+([0-9]*).*$"
"\\1" H5_SOVERS_MINOR ${_lt_vers_am_contents})
"\\1" H5_LIB_SOVERS_MINOR ${_lt_vers_am_contents})
string (REGEX REPLACE ".*LT_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
"\\1" H5_SOVERS_RELEASE ${_lt_vers_am_contents})
math (EXPR H5_SOVERS_MAJOR ${H5_SOVERS_INTERFACE}-${H5_SOVERS_RELEASE})
message (STATUS "SOVERSION: ${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
"\\1" H5_LIB_SOVERS_RELEASE ${_lt_vers_am_contents})
math (EXPR H5_LIB_SOVERS_MAJOR ${H5_LIB_SOVERS_INTERFACE}-${H5_LIB_SOVERS_RELEASE})
message (STATUS "SOVERSION: ${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
string (REGEX MATCH ".*LT_TOOLS_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_TOOLS_SOVERS_EXISTS ${_lt_vers_am_contents})
if (H5_TOOLS_SOVERS_EXISTS)
string (REGEX REPLACE ".*LT_TOOLS_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$"
@ -361,41 +316,56 @@ if (NOT "${H5_VERS_SUBRELEASE}" STREQUAL "")
else ()
set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}")
endif ()
set (HDF5_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_LIB_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_LIB_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
if (H5_TOOLS_SOVERS_EXISTS)
set (HDF5_TOOLS_PACKAGE_SOVERSION "${H5_TOOLS_SOVERS_MAJOR}.${H5_TOOLS_SOVERS_RELEASE}.${H5_TOOLS_SOVERS_MINOR}")
set (HDF5_TOOLS_PACKAGE_SOVERSION_MAJOR "${H5_TOOLS_SOVERS_MAJOR}")
else ()
set (HDF5_TOOLS_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_TOOLS_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_TOOLS_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_CXX_SOVERS_EXISTS)
set (HDF5_CXX_PACKAGE_SOVERSION "${H5_CXX_SOVERS_MAJOR}.${H5_CXX_SOVERS_RELEASE}.${H5_CXX_SOVERS_MINOR}")
set (HDF5_CXX_PACKAGE_SOVERSION_MAJOR "${H5_CXX_SOVERS_MAJOR}")
else ()
set (HDF5_CXX_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_CXX_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_CXX_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_F_SOVERS_EXISTS)
set (HDF5_F_PACKAGE_SOVERSION "${H5_F_SOVERS_MAJOR}.${H5_F_SOVERS_RELEASE}.${H5_F_SOVERS_MINOR}")
set (HDF5_F_PACKAGE_SOVERSION_MAJOR "${H5_F_SOVERS_MAJOR}")
else ()
set (HDF5_F_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_F_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_F_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_HL_SOVERS_EXISTS)
set (HDF5_HL_PACKAGE_SOVERSION "${H5_HL_SOVERS_MAJOR}.${H5_HL_SOVERS_RELEASE}.${H5_HL_SOVERS_MINOR}")
set (HDF5_HL_PACKAGE_SOVERSION_MAJOR "${H5_HL_SOVERS_MAJOR}")
else ()
set (HDF5_HL_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_HL_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_HL_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_HL_F_SOVERS_EXISTS)
set (HDF5_HL_CXX_PACKAGE_SOVERSION "${H5_HL_CXX_SOVERS_MAJOR}.${H5_HL_CXX_SOVERS_RELEASE}.${H5_HL_CXX_SOVERS_MINOR}")
set (HDF5_HL_CXX_PACKAGE_SOVERSION_MAJOR "${H5_HL_CXX_SOVERS_MAJOR}")
else ()
set (HDF5_HL_CXX_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_HL_CXX_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_HL_CXX_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_HL_F_SOVERS_EXISTS)
set (HDF5_HL_F_PACKAGE_SOVERSION "${H5_HL_F_SOVERS_MAJOR}.${H5_HL_F_SOVERS_RELEASE}.${H5_HL_F_SOVERS_MINOR}")
set (HDF5_HL_F_PACKAGE_SOVERSION_MAJOR "${H5_HL_F_SOVERS_MAJOR}")
else ()
set (HDF5_HL_F_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_HL_F_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_HL_F_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
if (H5_JAVA_SOVERS_EXISTS)
set (HDF5_PACKAGE_SOVERSION "${H5_JAVA_SOVERS_MAJOR}.${H5_JAVA_SOVERS_RELEASE}.${H5_JAVA_SOVERS_MINOR}")
set (HDF5_JAVA_PACKAGE_SOVERSION "${H5_JAVA_SOVERS_MAJOR}.${H5_JAVA_SOVERS_RELEASE}.${H5_JAVA_SOVERS_MINOR}")
set (HDF5_JAVA_PACKAGE_SOVERSION_MAJOR "${H5_JAVA_SOVERS_MAJOR}")
else ()
set (HDF5_JAVA_PACKAGE_SOVERSION "${H5_SOVERS_MAJOR}.${H5_SOVERS_RELEASE}.${H5_SOVERS_MINOR}")
set (HDF5_JAVA_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
set (HDF5_JAVA_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
endif ()
set (HDF5_PACKAGE_STRING "${HDF5_PACKAGE_NAME} ${HDF5_PACKAGE_VERSION_STRING}")
set (HDF5_PACKAGE_TARNAME "${HDF5_PACKAGE}${HDF_PACKAGE_EXT}")
@ -406,44 +376,15 @@ set (HDF5_PACKAGE_BUGREPORT "help@hdfgroup.org")
# Include some macros for reusable code
#-----------------------------------------------------------------------------
include (${HDF_RESOURCES_EXT_DIR}/HDFMacros.cmake)
HDF_DIR_PATHS(${HDF5_PACKAGE_NAME})
include (${HDF_RESOURCES_EXT_DIR}/HDFLibMacros.cmake)
include (${HDF_RESOURCES_DIR}/HDF5Macros.cmake)
#-----------------------------------------------------------------------------
# Setup output Directories
#-----------------------------------------------------------------------------
if (NOT HDF5_EXTERNALLY_CONFIGURED)
set (CMAKE_RUNTIME_OUTPUT_DIRECTORY
${PROJECT_BINARY_DIR}/bin CACHE PATH "Single Directory for all Executables."
)
set (CMAKE_LIBRARY_OUTPUT_DIRECTORY
${PROJECT_BINARY_DIR}/bin CACHE PATH "Single Directory for all Libraries"
)
set (CMAKE_ARCHIVE_OUTPUT_DIRECTORY
${PROJECT_BINARY_DIR}/bin CACHE PATH "Single Directory for all static libraries."
)
set (CMAKE_Fortran_MODULE_DIRECTORY
${PROJECT_BINARY_DIR}/bin CACHE PATH "Single Directory for all fortran modules."
)
if (WIN32)
set (CMAKE_TEST_OUTPUT_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${CMAKE_BUILD_TYPE})
set (CMAKE_PDB_OUTPUT_DIRECTORY
${PROJECT_BINARY_DIR}/bin CACHE PATH "Single Directory for all pdb files."
)
else ()
set (CMAKE_TEST_OUTPUT_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY})
endif ()
else ()
# if we are externally configured, but the project uses old cmake scripts
# this may not be set and utilities like H5detect will fail
if (NOT CMAKE_RUNTIME_OUTPUT_DIRECTORY)
set (CMAKE_RUNTIME_OUTPUT_DIRECTORY ${EXECUTABLE_OUTPUT_PATH})
endif ()
endif ()
#-----------------------------------------------------------------------------
# Targets built within this project are exported at Install time for use
# by other projects using FindHDF5.
# by other projects.
#-----------------------------------------------------------------------------
if (NOT HDF5_EXPORTED_TARGETS)
set (HDF5_EXPORTED_TARGETS "hdf5-targets")
@ -482,7 +423,6 @@ option (BUILD_SHARED_LIBS "Build Shared Libraries" ON)
set (H5_ENABLE_SHARED_LIB NO)
if (BUILD_SHARED_LIBS)
set (H5_ENABLE_SHARED_LIB YES)
set (LINK_SHARED_LIBS ${LINK_LIBS})
endif ()
set (H5_ENABLE_STATIC_LIB YES)
set (CMAKE_POSITION_INDEPENDENT_CODE ON)
@ -552,11 +492,9 @@ endif ()
set (EXE_EXT "")
if (WIN32)
set (EXE_EXT ".exe")
if (NOT CYGWIN)
add_definitions (-D_BIND_TO_CURRENT_VCLIBS_VERSION=1)
add_definitions (-D_CRT_SECURE_NO_WARNINGS)
add_definitions (-D_CONSOLE)
endif ()
add_definitions (-D_BIND_TO_CURRENT_VCLIBS_VERSION=1)
add_definitions (-D_CRT_SECURE_NO_WARNINGS)
add_definitions (-D_CONSOLE)
endif ()
if (MSVC)
@ -575,12 +513,15 @@ if (MAKE_SYSTEM)
set (CFG_INIT "")
endif ()
# Do not generate test programs by default
option (HDF5_BUILD_GENERATORS "Build Test Generators" OFF)
#-----------------------------------------------------------------------------
# Add some definitions for Debug Builds
#-----------------------------------------------------------------------------
option (HDF5_ENABLE_TRACE "Enable API tracing capability" OFF)
mark_as_advanced (HDF5_ENABLE_TRACE)
if (CMAKE_BUILD_TYPE MATCHES Debug)
if (${HDF_CFG_NAME} MATCHES "Debug")
add_definitions (-DDEBUG)
# Enable tracing of the API
if (HDF5_ENABLE_TRACE)
@ -602,34 +543,33 @@ endif ()
#-----------------------------------------------------------------------------
# Option to embed library info into executables
#-----------------------------------------------------------------------------
option (HDF5_ENABLE_EMBEDDED_LIBINFO "embed library info into executables" ON)
if (HDF5_ENABLE_EMBEDDED_LIBINFO)
set (H5_HAVE_EMBEDDED_LIBINFO 1)
if (CMAKE_SYSTEM_NAME STREQUAL "Emscripten")
set (H5_HAVE_EMBEDDED_LIBINFO 0)
else ()
option (HDF5_ENABLE_EMBEDDED_LIBINFO "embed library info into executables" ON)
if (HDF5_ENABLE_EMBEDDED_LIBINFO)
set (H5_HAVE_EMBEDDED_LIBINFO 1)
endif ()
endif ()
include (${HDF_RESOURCES_DIR}/HDFCompilerFlags.cmake)
#-----------------------------------------------------------------------------
# All libs/tests/examples need the main include directories
#-----------------------------------------------------------------------------
INCLUDE_DIRECTORIES (${HDF5_BINARY_DIR} ${HDF5_SRC_DIR} ${CMAKE_RUNTIME_OUTPUT_DIRECTORY})
#-----------------------------------------------------------------------------
# Option to Enable MPI Parallel
#-----------------------------------------------------------------------------
set (CMAKE_MODULE_PATH ${HDF_RESOURCES_DIR} ${HDF_RESOURCES_EXT_DIR} ${CMAKE_MODULE_PATH})
option (HDF5_ENABLE_PARALLEL "Enable parallel build (requires MPI)" OFF)
if (HDF5_ENABLE_PARALLEL)
include (FindMPI)
INCLUDE_DIRECTORIES (${MPI_C_INCLUDE_PATH})
find_package(MPI REQUIRED)
if (MPI_C_FOUND)
set (H5_HAVE_PARALLEL 1)
# MPI checks, only do these if MPI_C_FOUND is true, otherwise they always fail
# and once set, they are cached as false and not regenerated
set (CMAKE_REQUIRED_LIBRARIES "${MPI_C_LIBRARIES}" )
# Used by Fortran + MPI
CHECK_SYMBOL_EXISTS (MPI_Comm_c2f "${MPI_C_INCLUDE_PATH}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Comm)
CHECK_SYMBOL_EXISTS (MPI_Info_c2f "${MPI_C_INCLUDE_PATH}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Info)
CHECK_SYMBOL_EXISTS (MPI_Comm_c2f "${MPI_C_INCLUDE_DIRS}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Comm)
CHECK_SYMBOL_EXISTS (MPI_Info_c2f "${MPI_C_INCLUDE_DIRS}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Info)
INCLUDE_DIRECTORIES (${MPI_C_INCLUDE_DIRS})
else ()
message (STATUS "Parallel libraries not found")
endif ()
@ -638,7 +578,6 @@ endif ()
# Parallel IO usage requires MPI to be Linked and Included
if (H5_HAVE_PARALLEL)
set (LINK_LIBS ${LINK_LIBS} ${MPI_C_LIBRARIES})
set (LINK_SHARED_LIBS ${LINK_SHARED_LIBS} ${MPI_C_LIBRARIES})
if (MPI_C_LINK_FLAGS)
set (CMAKE_EXE_LINKER_FLAGS "${MPI_C_LINK_FLAGS} ${CMAKE_EXE_LINKER_FLAGS}")
endif ()
@ -742,26 +681,20 @@ if (HDF5_ENABLE_THREADSAFE)
endif ()
endif ()
# -----------------------------------------------------------------------
# wrapper script variables
#
#set (CFLAGS "${C_DEFINES}")
#set (CXXFLAGS "${CXX_DEFINES}")
#-----------------------------------------------------------------------------
# Add the HDF5 Library Target to the build
#-----------------------------------------------------------------------------
add_subdirectory (${HDF5_SOURCE_DIR}/src ${PROJECT_BINARY_DIR}/src)
add_subdirectory (src)
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "SVN" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL)
ADD_DEPENDENCIES (${HDF5_LIB_TARGET} ZLIB)
add_dependencies (${HDF5_LIB_TARGET} ZLIB)
if (BUILD_SHARED_LIBS)
add_dependencies (${HDF5_LIBSH_TARGET} ZLIB)
endif ()
endif ()
if (SZIP_FOUND AND SZIP_USE_EXTERNAL)
ADD_DEPENDENCIES (${HDF5_LIB_TARGET} SZIP)
add_dependencies (${HDF5_LIB_TARGET} SZIP)
if (BUILD_SHARED_LIBS)
add_dependencies (${HDF5_LIBSH_TARGET} SZIP)
endif ()
@ -796,12 +729,11 @@ if (BUILD_TESTING)
if (NOT HDF5_EXTERNALLY_CONFIGURED)
if (EXISTS "${HDF5_SOURCE_DIR}/test" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/test")
add_subdirectory (${HDF5_SOURCE_DIR}/tools/lib ${PROJECT_BINARY_DIR}/tools/lib)
add_subdirectory (${HDF5_SOURCE_DIR}/test ${PROJECT_BINARY_DIR}/test)
add_subdirectory (test)
endif ()
if (H5_HAVE_PARALLEL)
if (EXISTS "${HDF5_SOURCE_DIR}/testpar" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/testpar")
add_subdirectory (${HDF5_SOURCE_DIR}/testpar ${PROJECT_BINARY_DIR}/testpar)
add_subdirectory (testpar)
endif ()
endif ()
endif ()
@ -813,7 +745,7 @@ endif ()
if (EXISTS "${HDF5_SOURCE_DIR}/tools" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/tools")
option (HDF5_BUILD_TOOLS "Build HDF5 Tools" ON)
if (HDF5_BUILD_TOOLS)
add_subdirectory (${HDF5_SOURCE_DIR}/tools ${PROJECT_BINARY_DIR}/tools)
add_subdirectory (tools)
endif ()
endif ()
@ -823,7 +755,7 @@ endif ()
if (EXISTS "${HDF5_SOURCE_DIR}/examples" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/examples")
option (HDF5_BUILD_EXAMPLES "Build HDF5 Library Examples" ON)
if (HDF5_BUILD_EXAMPLES)
add_subdirectory (${HDF5_SOURCE_DIR}/examples ${PROJECT_BINARY_DIR}/examples)
add_subdirectory (examples)
endif ()
endif ()
@ -834,7 +766,7 @@ if (EXISTS "${HDF5_SOURCE_DIR}/hl" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/hl")
option (HDF5_BUILD_HL_LIB "Build HIGH Level HDF5 Library" ON)
if (HDF5_BUILD_HL_LIB)
set (H5_INCLUDE_HL 1)
add_subdirectory (${HDF5_SOURCE_DIR}/hl ${PROJECT_BINARY_DIR}/hl)
add_subdirectory (hl)
endif ()
endif ()
@ -848,16 +780,8 @@ set (H5_FC_FUNC "H5_FC_FUNC(name,NAME) name ## _")
set (H5_FC_FUNC_ "H5_FC_FUNC_(name,NAME) name ## _")
if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/fortran")
option (HDF5_BUILD_FORTRAN "Build FORTRAN support" OFF)
option (SKIP_HDF5_FORTRAN_SHARED "Do not build the fortran shared libraries" OFF)
if (HDF5_BUILD_FORTRAN)
if (BUILD_SHARED_LIBS AND APPLE)
if (NOT ALLOW_UNSUPPORTED)
message (STATUS " **** Shared FORTRAN libraries are unsupported **** ")
set (SKIP_HDF5_FORTRAN_SHARED ON)
else ()
message (STATUS " **** Allowing unsupported Fortran shared libraries **** ")
endif ()
endif ()
option (HDF5_ENABLE_F2003 "Enable FORTRAN 2003 Standard" ON)
include (${HDF_RESOURCES_EXT_DIR}/HDFUseFortran.cmake)
@ -870,6 +794,7 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
endif ()
include (${HDF_RESOURCES_DIR}/HDF5UseFortran.cmake)
set (LINK_Fortran_LIBS ${LINK_LIBS})
if (HDF5_ENABLE_F2003)
if (NOT FORTRAN_HAVE_ISO_C_BINDING)
@ -879,23 +804,17 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
# Parallel IO usage requires MPI to be Linked and Included
if (H5_HAVE_PARALLEL)
set (LINK_Fortran_LIBS ${LINK_LIBS} ${MPI_Fortran_LIBRARIES})
set (LINK_Fortran_SHARED_LIBS ${LINK_SHARED_LIBS} ${MPI_Fortran_LIBRARIES})
set (LINK_Fortran_LIBS ${LINK_Fortran_LIBS} ${MPI_Fortran_LIBRARIES})
if (MPI_Fortran_LINK_FLAGS)
set (CMAKE_Fortran_EXE_LINKER_FLAGS "${MPI_Fortran_LINK_FLAGS} ${CMAKE_EXE_LINKER_FLAGS}")
endif ()
endif ()
# -----------------------------------------------------------------------
# wrapper script variables
#
# set (FCFLAGS "${Fortran_DEFINES}")
add_subdirectory (${HDF5_SOURCE_DIR}/fortran ${PROJECT_BINARY_DIR}/fortran)
add_subdirectory (fortran)
if (HDF5_BUILD_HL_LIB)
if (EXISTS "${HDF5_SOURCE_DIR}/hl/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/hl/fortran")
#-- Build the High Level Fortran source codes
add_subdirectory (${HDF5_SOURCE_DIR}/hl/fortran ${PROJECT_BINARY_DIR}/hl/fortran)
add_subdirectory (hl/fortran)
endif ()
endif ()
endif ()
@ -918,11 +837,11 @@ if (EXISTS "${HDF5_SOURCE_DIR}/c++" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/c++")
if (CMAKE_NO_STD_NAMESPACE)
set (H5_NO_STD 1)
endif ()
add_subdirectory (${HDF5_SOURCE_DIR}/c++ ${PROJECT_BINARY_DIR}/c++)
add_subdirectory (c++)
if (HDF5_BUILD_HL_LIB)
if (EXISTS "${HDF5_SOURCE_DIR}/hl/c++" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/hl/c++")
#-- Build the High Level Fortran source codes
add_subdirectory (${HDF5_SOURCE_DIR}/hl/c++ ${PROJECT_BINARY_DIR}/hl/c++)
add_subdirectory (hl/c++)
endif ()
endif ()
endif ()
@ -944,7 +863,7 @@ endif ()
if (EXISTS "${HDF5_SOURCE_DIR}/java" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/java")
option (HDF5_BUILD_JAVA "Build Java HDF5 Library" OFF)
if (HDF5_BUILD_JAVA)
add_subdirectory (${HDF5_SOURCE_DIR}/java ${PROJECT_BINARY_DIR}/java)
add_subdirectory (java)
endif ()
endif ()

2
COPYING
View File

@ -99,7 +99,7 @@ and/or accompanying materials:
HDF5 is available with the SZIP compression library but SZIP is not part
of HDF5 and has separate copyright and license terms. See “Szip Compression
in HDF Products” (www.hdfgroup.org/doc_resource/SZIP/) for further details.
in HDF Products” (https://support.hdfgroup.org/doc_resource/SZIP/) for further details.
-----------------------------------------------------------------------------

13
CTestConfig.cmake
View File

@ -1,3 +1,14 @@
#
# Copyright by The HDF Group.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
## This file should be placed in the root directory of your project.
## Then modify the CMakeLists.txt file in the root directory of your
## project to incorporate the testing dashboard.
@ -13,7 +24,7 @@ if (CDASH_LOCAL)
set (CTEST_DROP_LOCATION "/submit.php?project=HDF5Trunk")
else ()
set (CTEST_DROP_SITE "cdash.hdfgroup.org")
set (CTEST_DROP_LOCATION "/submit.php?project=HDF5+Trunk")
set (CTEST_DROP_LOCATION "/submit.php?project=HDF5")
endif ()
set (CTEST_DROP_SITE_CDASH TRUE)

174
MANIFEST
View File

@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
#------------------------------------------------------------------------------
# This is the list of files that are part of HDF5 source distribution.
@ -247,7 +245,6 @@
./fortran/src/HDF5.F90
./fortran/src/Makefile.am
./fortran/src/README
./fortran/src/README_DEVELOPEMENT _DO_NOT_DISTRIBUTE_
./fortran/src/h5fc.in
./fortran/src/hdf5_fortrandll.def.in
@ -377,6 +374,8 @@
./c++/src/H5IntType.h
./c++/src/H5LaccProp.cpp
./c++/src/H5LaccProp.h
./c++/src/H5LcreatProp.cpp
./c++/src/H5LcreatProp.h
./c++/src/H5Library.cpp
./c++/src/H5Library.h
./c++/src/H5Location.cpp
@ -395,6 +394,7 @@
./c++/src/H5VarLenType.h
./c++/src/Makefile.am
./c++/src/RM_stylesheet.css
./c++/src/C2Cppfunction_map.mht
./c++/src/cpp_doc_config
./c++/src/h5c++.in
./c++/src/footer.html
@ -434,7 +434,9 @@
./release_docs/COPYING
./release_docs/HISTORY-1_0-1_8_0_rc3.txt
./release_docs/HISTORY-1_9.txt
./release_docs/HISTORY-1_8.txt
./release_docs/HISTORY-1_10.txt
./release_docs/HISTORY-1_8_0-1_10_0.txt
./release_docs/INSTALL
./release_docs/INSTALL_CMake.txt
./release_docs/INSTALL_Cygwin.txt
@ -518,6 +520,9 @@
./src/H5Ctest.c
./src/H5CS.c
./src/H5CSprivate.h
./src/H5CX.c
./src/H5CXprivate.h
./src/H5CXmodule.h
./src/H5D.c
./src/H5Dbtree.c
./src/H5Dbtree2.c
@ -753,6 +758,7 @@
./src/H5Oflush.c
./src/H5Ofsinfo.c
./src/H5Oginfo.c
./src/H5Oint.c
./src/H5Olayout.c
./src/H5Olinfo.c
./src/H5Olink.c
@ -800,13 +806,17 @@
./src/H5PBpkg.h
./src/H5PBprivate.h
./src/H5PL.c
./src/H5PLint.c
./src/H5PLmodule.h
./src/H5PLpath.c
./src/H5PLpkg.h
./src/H5PLplugin_cache.c
./src/H5PLprivate.h
./src/H5PLpublic.h
./src/H5PLextern.h
./src/H5R.c
./src/H5Rdeprec.c
./src/H5Rint.c
./src/H5Rmodule.h
./src/H5Rpkg.h
./src/H5Rprivate.h
@ -907,6 +917,7 @@
./test/atomic_reader.c
./test/atomic_writer.c
./test/bad_compound.h5
./test/bad_offset.h5
./test/be_data.h5
./test/be_extlink1.h5
./test/be_extlink2.h5
@ -932,10 +943,6 @@
./test/dt_arith.c
./test/dtypes.c
./test/dtransform.c
./test/dynlib1.c
./test/dynlib2.c
./test/dynlib3.c
./test/dynlib4.c
./test/earray.c
./test/efc.c
./test/enc_dec_plist.c
@ -957,11 +964,17 @@
./test/filespace_1_8.h5
./test/filespace_1_6.h5
./test/freespace.c
./test/filenotclosed.c
./test/file_image.c
./test/file_image_core_test.h5
./test/fill_old.h5
./test/fillval.c
./test/filter_fail.c
./test/filter_plugin.c
./test/filter_plugin1_dsets.c
./test/filter_plugin2_dsets.c
./test/filter_plugin3_dsets.c
./test/filter_plugin4_groups.c
./test/flush1.c
./test/flush2.c
./test/flushrefresh.c
@ -969,9 +982,11 @@
./test/fsm_aggr_persist.h5
./test/genall5.c
./test/genall5.h
./test/gen_bad_offset.c
./test/gen_bad_ohdr.c
./test/gen_bad_compound.c
./test/gen_bogus.c
./test/gen_bounds.c
./test/gen_cross.c
./test/gen_deflate.c
./test/gen_file_image.c
@ -1024,7 +1039,6 @@
./test/page_buffer.c
./test/paged_nopersist.h5
./test/paged_persist.h5
./test/plugin.c
./test/reserved.c
./test/pool.c
./test/set_extent.c
@ -1058,12 +1072,13 @@
./test/testcheck_version.sh.in
./test/testerror.sh.in
./test/testlinks_env.sh.in
./test/test_filenotclosed.sh.in
./test/test_filter_plugin.sh.in
./test/testflushrefresh.sh.in
./test/testframe.c
./test/testhdf5.c
./test/testhdf5.h
./test/testlibinfo.sh.in
./test/test_plugin.sh.in
./test/test_usecases.sh.in
./test/testmeta.c
./test/testswmr.sh.in
@ -1221,6 +1236,7 @@
./testpar/COPYING
./testpar/Makefile.am
./testpar/t_bigio.c
./testpar/t_cache.c
./testpar/t_cache_image.c
./testpar/t_chunk_alloc.c
@ -1229,11 +1245,14 @@
./testpar/t_file.c
./testpar/t_file_image.c
./testpar/t_filter_read.c
./testpar/t_filters_parallel.c
./testpar/t_filters_parallel.h
./testpar/t_mdset.c
./testpar/t_mpi.c
./testpar/t_ph5basic.c
./testpar/t_pflush1.c
./testpar/t_pflush2.c
./testpar/t_pread.c
./testpar/t_prop.c
./testpar/t_shapesame.c
./testpar/t_pshutdown.c
@ -1276,20 +1295,16 @@
./tools/test/h5import/h5importtestutil.sh.in
# testfiles for h5import
./tools/test/h5import/testfiles/binfp64.conf
./tools/test/h5import/testfiles/binfp64.h5
./tools/test/h5import/testfiles/binin16.conf
./tools/test/h5import/testfiles/binin16.h5
./tools/test/h5import/testfiles/binin32.conf
./tools/test/h5import/testfiles/binin32.h5
./tools/test/h5import/testfiles/binin8.conf
./tools/test/h5import/testfiles/binin8.h5
./tools/test/h5import/testfiles/binin8w.conf
./tools/test/h5import/testfiles/binin8w.h5
./tools/test/h5import/testfiles/binuin16.conf
./tools/test/h5import/testfiles/binuin16.h5
./tools/test/h5import/testfiles/binuin32.conf
./tools/test/h5import/testfiles/binuin32.h5
./tools/test/h5import/testfiles/tall_fp32.ddl
./tools/test/h5import/testfiles/tall_i32.ddl
./tools/test/h5import/testfiles/tintsattrs_u32.ddl
./tools/test/h5import/testfiles/textpfe.conf
./tools/test/h5import/testfiles/textpfe.h5
./tools/test/h5import/testfiles/textpfe64.txt
@ -1348,6 +1363,7 @@
./tools/test/h5format_convert/testfiles/h5fc_v_n_all.ddl
./tools/test/h5format_convert/testfiles/h5fc_v_bt1.ddl
./tools/test/h5format_convert/testfiles/h5fc_v_err.ddl
./tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err
./tools/test/h5format_convert/testfiles/h5fc_v_non_chunked.ddl
./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl
./tools/test/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl
@ -1420,6 +1436,12 @@
./tools/test/h5ls/h5ls_plugin.sh.in
./tools/test/h5ls/testh5ls.sh.in
./tools/test/h5ls/testh5lsvds.sh.in
./tools/test/h5ls/vds_prefix/tvds-1.ls
./tools/test/h5ls/vds_prefix/tvds-2.ls
./tools/test/h5ls/vds_prefix/tvds-3_1.ls
./tools/test/h5ls/vds_prefix/tvds-3_2.ls
./tools/test/h5ls/vds_prefix/tvds-4.ls
./tools/test/h5ls/vds_prefix/tvds-5.ls
# h5copy sources
./tools/src/h5copy/Makefile.am
@ -1427,6 +1449,7 @@
./tools/test/h5copy/Makefile.am
./tools/test/h5copy/h5copygentest.c
./tools/test/h5copy/testh5copy.sh.in
./tools/test/h5copy/dynlib_copy.c
./tools/lib/Makefile.am
@ -1468,14 +1491,41 @@
./tools/test/misc/testh5mkgrp.sh.in
./tools/test/misc/testh5repart.sh.in
./tools/test/misc/talign.c
./tools/test/misc/testfiles/h5clear_equal_after_size.ddl
./tools/test/misc/testfiles/h5clear_equal_before_size.ddl
./tools/test/misc/testfiles/h5clear_greater_after_size.ddl
./tools/test/misc/testfiles/h5clear_greater_before_size.ddl
./tools/test/misc/testfiles/h5clear_less_after_size.ddl
./tools/test/misc/testfiles/h5clear_less_before_size.ddl
./tools/test/misc/testfiles/h5clear_missing_file.ddl
./tools/test/misc/testfiles/h5clear_noclose_after_size.ddl
./tools/test/misc/testfiles/h5clear_noclose_before_size.ddl
./tools/test/misc/testfiles/h5clear_no_mdc_image.ddl
./tools/test/misc/testfiles/h5clear_open_fail.ddl
./tools/test/misc/testfiles/h5clear_status_noclose_after_size.ddl
./tools/test/misc/testfiles/h5clear_usage.ddl
./tools/test/misc/testfiles/h5clear_user_equal_after_size.ddl
./tools/test/misc/testfiles/h5clear_user_equal_before_size.ddl
./tools/test/misc/testfiles/h5clear_user_greater_after_size.ddl
./tools/test/misc/testfiles/h5clear_user_greater_before_size.ddl
./tools/test/misc/testfiles/h5clear_user_less_after_size.ddl
./tools/test/misc/testfiles/h5clear_user_less_before_size.ddl
./tools/test/misc/testfiles/h5clear_fsm_persist_equal.h5
./tools/test/misc/testfiles/h5clear_fsm_persist_greater.h5
./tools/test/misc/testfiles/h5clear_fsm_persist_less.h5
./tools/test/misc/testfiles/h5clear_fsm_persist_noclose.h5
./tools/test/misc/testfiles/h5clear_fsm_persist_user_equal.h5
./tools/test/misc/testfiles/h5clear_fsm_persist_user_greater.h5
./tools/test/misc/testfiles/h5clear_fsm_persist_user_less.h5
./tools/test/misc/testfiles/h5clear_log_v3.h5
./tools/test/misc/testfiles/h5clear_mdc_image.h5
./tools/test/misc/testfiles/h5clear_sec2_v0.h5
./tools/test/misc/testfiles/h5clear_sec2_v2.h5
./tools/test/misc/testfiles/h5clear_sec2_v3.h5
./tools/test/misc/testfiles/h5clear_status_noclose.h5
./tools/test/misc/testfiles/latest_h5clear_log_v3.h5
./tools/test/misc/testfiles/latest_h5clear_sec2_v3.h5
./tools/test/misc/testfiles/mod_h5clear_mdc_image.h5
./tools/test/misc/testfiles/orig_h5clear_sec2_v0.h5
./tools/test/misc/testfiles/orig_h5clear_sec2_v2.h5
./tools/test/misc/testfiles/orig_h5clear_sec2_v3.h5
./tools/test/misc/testfiles/h5mkgrp_help.txt
./tools/test/misc/testfiles/h5mkgrp_version.txt.in
./tools/test/misc/h5perf_gentest.c
@ -1626,7 +1676,8 @@
./tools/testfiles/tbinregR.exp
./tools/testfiles/tbinregR.ddl
./tools/testfiles/tbitfields.h5
./tools/testfiles/tbitnopaque.ddl
./tools/testfiles/tbitnopaque_be.ddl
./tools/testfiles/tbitnopaque_le.ddl
./tools/testfiles/tbitnopaque.h5
./tools/testfiles/tboot1.ddl
./tools/testfiles/tboot2.ddl
@ -1706,6 +1757,9 @@
./tools/testfiles/tgrp_comments.ls
./tools/testfiles/tgrp_comments.ddl
./tools/testfiles/tgrp_comments.h5
./tools/testfiles/tgrpnullspace.h5
./tools/testfiles/tgrpnullspace.ddl
./tools/testfiles/tgrpnullspace.ls
./tools/testfiles/thlink-1.ddl
./tools/testfiles/thlink-2.ddl
./tools/testfiles/thlink-3.ddl
@ -1761,6 +1815,7 @@
./tools/testfiles/tno-subset.h5
./tools/testfiles/tno-subset.ddl
./tools/testfiles/tnullspace.h5
./tools/testfiles/tnullspace.h5.xml
./tools/testfiles/tnullspace.ddl
./tools/testfiles/tobjref.h5
./tools/testfiles/topaque.h5
@ -2076,7 +2131,8 @@
./tools/testfiles/tarray6.h5.xml
./tools/testfiles/tarray7.h5.xml
./tools/testfiles/tattr.h5.xml
./tools/testfiles/tbitfields.h5.xml
./tools/testfiles/tbitfields_be.h5.xml
./tools/testfiles/tbitfields_le.h5.xml
./tools/testfiles/tcompound.h5.xml
./tools/testfiles/tcompound2.h5.xml
./tools/testfiles/tcompound_complex.h5.xml
@ -2085,6 +2141,8 @@
./tools/testfiles/tdset2.h5.xml
./tools/testfiles/tempty.h5.xml
./tools/testfiles/tenum.h5.xml
./tools/testfiles/test35.nc
./tools/testfiles/test35.nc.xml
./tools/testfiles/tfpformat.h5.xml
./tools/testfiles/tgroup.h5.xml
./tools/testfiles/thlink.h5.xml
@ -2188,6 +2246,8 @@
./tools/test/h5diff/testfiles/h5diff_63.txt
./tools/test/h5diff/testfiles/h5diff_600.txt
./tools/test/h5diff/testfiles/h5diff_601.txt
./tools/test/h5diff/testfiles/h5diff_601_ERR.err
./tools/test/h5diff/testfiles/h5diff_601_ERR.txt
./tools/test/h5diff/testfiles/h5diff_603.txt
./tools/test/h5diff/testfiles/h5diff_604.txt
./tools/test/h5diff/testfiles/h5diff_605.txt
@ -2235,6 +2295,8 @@
./tools/test/h5diff/testfiles/h5diff_709.txt
./tools/test/h5diff/testfiles/h5diff_710.txt
./tools/test/h5diff/testfiles/h5diff_80.txt
./tools/test/h5diff/testfiles/h5diff_800.txt
./tools/test/h5diff/testfiles/h5diff_801.txt
./tools/test/h5diff/testfiles/h5diff_90.txt
./tools/test/h5diff/testfiles/h5diff_100.txt
./tools/test/h5diff/testfiles/h5diff_101.txt
@ -2292,11 +2354,21 @@
./tools/test/h5diff/testfiles/h5diff_452.txt
./tools/test/h5diff/testfiles/h5diff_453.txt
./tools/test/h5diff/testfiles/h5diff_454.txt
./tools/test/h5diff/testfiles/h5diff_454_ERR.err
./tools/test/h5diff/testfiles/h5diff_454_ERR.txt
./tools/test/h5diff/testfiles/h5diff_455.txt
./tools/test/h5diff/testfiles/h5diff_455_ERR.err
./tools/test/h5diff/testfiles/h5diff_455_ERR.txt
./tools/test/h5diff/testfiles/h5diff_456.txt
./tools/test/h5diff/testfiles/h5diff_457.txt
./tools/test/h5diff/testfiles/h5diff_457_ERR.err
./tools/test/h5diff/testfiles/h5diff_457_ERR.txt
./tools/test/h5diff/testfiles/h5diff_458.txt
./tools/test/h5diff/testfiles/h5diff_458_ERR.err
./tools/test/h5diff/testfiles/h5diff_458_ERR.txt
./tools/test/h5diff/testfiles/h5diff_459.txt
./tools/test/h5diff/testfiles/h5diff_459_ERR.err
./tools/test/h5diff/testfiles/h5diff_459_ERR.txt
./tools/test/h5diff/testfiles/h5diff_465.txt
./tools/test/h5diff/testfiles/h5diff_466.txt
./tools/test/h5diff/testfiles/h5diff_467.txt
@ -2339,12 +2411,14 @@
./tools/test/h5diff/testfiles/h5diff_attr1.h5
./tools/test/h5diff/testfiles/h5diff_attr2.h5
./tools/test/h5diff/testfiles/h5diff_attr3.h5
./tools/test/h5diff/testfiles/h5diff_attr_v_level1.h5
./tools/test/h5diff/testfiles/h5diff_attr_v_level2.h5
./tools/test/h5diff/testfiles/h5diff_basic1.h5
./tools/test/h5diff/testfiles/h5diff_basic2.h5
./tools/test/h5diff/testfiles/h5diff_dset1.h5
./tools/test/h5diff/testfiles/h5diff_dset2.h5
./tools/test/h5diff/testfiles/h5diff_dset3.h5
./tools/test/h5diff/testfiles/h5diff_dtypes.h5
./tools/test/h5diff/testfiles/h5diff_empty.h5
./tools/test/h5diff/testfiles/h5diff_hyper1.h5
@ -2379,18 +2453,15 @@
./tools/test/h5diff/testfiles/compounds_array_vlen2.h5
./tools/test/h5diff/testfiles/non_comparables1.h5
./tools/test/h5diff/testfiles/non_comparables2.h5
./tools/test/h5diff/testfiles/tmptest2.he5
./tools/test/h5diff/testfiles/tmpSingleSiteBethe.reference.h5
./tools/test/h5diff/testfiles/h5diff_tmp1.txt
./tools/test/h5diff/testfiles/tmptest.he5
./tools/test/h5diff/testfiles/h5diff_tmp2.txt
./tools/test/h5diff/testfiles/tmpSingleSiteBethe.output.h5
./tools/test/h5diff/testfiles/h5diff_8625.txt
./tools/test/h5diff/testfiles/h5diff_8639.txt
./tools/test/h5diff/testfiles/tudfilter.h5
./tools/test/h5diff/testfiles/tudfilter2.h5
./tools/test/h5diff/testfiles/h5diff_ud.txt
./tools/test/h5diff/testfiles/h5diff_udfail.txt
./tools/test/h5diff/testfiles/diff_strings1.h5
./tools/test/h5diff/testfiles/diff_strings2.h5
./tools/test/h5diff/testfiles/h5diff_vlstr.txt
#vds
./tools/test/h5diff/testfiles/h5diff_v1.txt
./tools/test/h5diff/testfiles/h5diff_v2.txt
@ -2398,6 +2469,8 @@
#test files for h5repack
./tools/test/h5repack/testfiles/README
./tools/test/h5repack/testfiles/bounds_latest_latest.h5
./tools/test/h5repack/testfiles/h5repack_aggr.h5
./tools/test/h5repack/testfiles/h5repack_attr.h5
./tools/test/h5repack/testfiles/h5repack_attr_refs.h5
./tools/test/h5repack/testfiles/h5repack_deflate.h5
@ -2407,6 +2480,8 @@
./tools/test/h5repack/testfiles/h5repack_fill.h5
./tools/test/h5repack/testfiles/h5repack_filters.h5
./tools/test/h5repack/testfiles/h5repack_fletcher.h5
./tools/test/h5repack/testfiles/h5repack_fsm_aggr_nopersist.h5
./tools/test/h5repack/testfiles/h5repack_fsm_aggr_persist.h5
./tools/test/h5repack/testfiles/h5repack_hlink.h5
./tools/test/h5repack/testfiles/h5repack.info
./tools/test/h5repack/testfiles/h5repack_layout.h5
@ -2418,15 +2493,20 @@
./tools/test/h5repack/testfiles/h5repack_nested_8bit_enum_deflated.h5
./tools/test/h5repack/testfiles/h5repack_nested_8bit_enum.h5
./tools/test/h5repack/testfiles/h5repack_nbit.h5
./tools/test/h5repack/testfiles/h5repack_none.h5
./tools/test/h5repack/testfiles/h5repack_objs.h5
./tools/test/h5repack/testfiles/h5repack_paged_nopersist.h5
./tools/test/h5repack/testfiles/h5repack_paged_persist.h5
./tools/test/h5repack/testfiles/h5repack_refs.h5
./tools/test/h5repack/testfiles/h5repack_shuffle.h5
./tools/test/h5repack/testfiles/h5repack_soffset.h5
./tools/test/h5repack/testfiles/h5repack_szip.h5
./tools/test/h5repack/testfiles/ublock.bin
./tools/test/h5repack/testfiles/crtorder.tordergr.h5.ddl
./tools/test/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl
./tools/test/h5repack/testfiles/plugin_none.h5repack_layout.UD.h5.tst
./tools/test/h5repack/testfiles/plugin_test.h5repack_layout.h5.tst
./tools/test/h5repack/testfiles/plugin_zero.h5repack_layout.h5.tst
./tools/test/h5repack/testfiles/plugin_version_test.h5repack_layout.h5.tst
./tools/test/h5repack/testfiles/h5repack-help.txt
./tools/test/h5repack/testfiles/h5repack_filters.h5-gzip_verbose_filters.tst
@ -2435,7 +2515,13 @@
./tools/test/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl
./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl
./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl
./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst
./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.ddl
./tools/test/h5repack/testfiles/GS.h5repack_paged_nopersist.h5.ddl
./tools/test/h5repack/testfiles/S.h5repack_fsm_aggr_persist.h5.ddl
./tools/test/h5repack/testfiles/SP.h5repack_fsm_aggr_nopersist.h5.ddl
./tools/test/h5repack/testfiles/SP.h5repack_paged_persist.h5.ddl
./tools/test/h5repack/testfiles/SPT.h5repack_aggr.h5.ddl
./tools/test/h5repack/testfiles/STG.h5repack_none.h5.ddl
./tools/test/h5repack/testfiles/1_vds.h5-vds_dset_chunk20x10x5-v.ddl
./tools/test/h5repack/testfiles/2_vds.h5-vds_chunk3x6x9-v.ddl
./tools/test/h5repack/testfiles/3_1_vds.h5-vds_chunk2x5x8-v.ddl
@ -2475,6 +2561,12 @@
./tools/test/h5copy/testfiles/h5copy_misc1.out
./tools/test/h5copy/testfiles/h5copytst_new.h5
./tools/test/h5copy/testfiles/h5copytst_new.out.ls
./tools/test/h5copy/testfiles/h5copy_plugin_fail_ERR.out.h5.txt
./tools/test/h5copy/testfiles/h5copy_plugin_test.out.h5.txt
./tools/test/h5copy/testfiles/tudfilter.h5
./tools/test/h5copy/testfiles/tudfilter2.h5
./tools/test/h5copy/testfiles/tudfilter.h5.txt
./tools/test/h5copy/testfiles/tudfilter.h5_ERR.txt
# test files for h5mkgrp
./tools/testfiles/h5mkgrp_nested_p.ls
@ -2834,7 +2926,7 @@
./java/examples/intro/Makefile.am
./java/examples/intro/CMakeLists.txt
./java/examples/intro/runExample.sh.in
./java/examples/intro/JavaIntroExample.sh.in
./java/examples/intro/H5_CreateAttribute.java
./java/examples/intro/H5_CreateDataset.java
./java/examples/intro/H5_CreateFile.java
@ -2845,7 +2937,7 @@
./java/examples/groups/Makefile.am
./java/examples/groups/CMakeLists.txt
./java/examples/groups/runExample.sh.in
./java/examples/groups/JavaGroupExample.sh.in
./java/examples/groups/H5Ex_G_Create.java
./java/examples/groups/H5Ex_G_Iterate.java
./java/examples/groups/H5Ex_G_Compact.java
@ -2859,7 +2951,7 @@
./java/examples/datasets/Makefile.am
./java/examples/datasets/CMakeLists.txt
./java/examples/datasets/runExample.sh.in
./java/examples/datasets/JavaDatasetExample.sh.in
./java/examples/datasets/H5Ex_D_Alloc.java
./java/examples/datasets/H5Ex_D_Checksum.java
./java/examples/datasets/H5Ex_D_Chunk.java
@ -2881,7 +2973,7 @@
./java/examples/datatypes/Makefile.am
./java/examples/datatypes/CMakeLists.txt
./java/examples/datatypes/runExample.sh.in
./java/examples/datatypes/JavaDatatypeExample.sh.in
./java/examples/datatypes/H5Ex_T_Array.java
./java/examples/datatypes/H5Ex_T_ArrayAttribute.java
./java/examples/datatypes/H5Ex_T_Bit.java
@ -2956,6 +3048,7 @@
./java/test/CMakeLists.txt
./java/test/junit.sh.in
./java/test/JUnit-interface.txt
./java/test/JUnit-unit.txt
./java/test/JUnit-interface.ert
./java/test/h5ex_g_iterate.orig
./java/test/TestH5.java
@ -2965,6 +3058,7 @@
./java/test/TestH5Dplist.java
./java/test/TestH5E.java
./java/test/TestH5Edefault.java
./java/test/TestH5Eparams.java
./java/test/TestH5Eregister.java
./java/test/TestH5Fparams.java
./java/test/TestH5Fbasic.java
@ -2994,6 +3088,7 @@
./java/test/TestH5T.java
./java/test/TestH5Z.java
./java/test/TestAll.java
./java/test/TestUnit.java
./java/lib/hamcrest-core.jar
./java/lib/junit.jar
@ -3020,6 +3115,8 @@
./config/cmake/HDF5Macros.cmake
./config/cmake/HDF5UseFortran.cmake
./config/cmake/jrunTest.cmake
./config/cmake/libh5cc.in
./config/cmake/libhdf5.pc.in
./config/cmake/libhdf5.settings.cmake.in
./config/cmake/mccacheinit.cmake
./config/cmake/patch.xml
@ -3031,10 +3128,8 @@
./config/cmake/userblockTest.cmake
./config/cmake/vfdTest.cmake
./config/cmake_ext_mod/CheckTypeSize.cmake
./config/cmake_ext_mod/ConfigureChecks.cmake
./config/cmake_ext_mod/CTestCustom.cmake
./config/cmake_ext_mod/FindMPI.cmake
./config/cmake_ext_mod/FindSZIP.cmake
./config/cmake_ext_mod/GetTimeOfDayTest.cpp
./config/cmake_ext_mod/grepTest.cmake
@ -3108,6 +3203,7 @@
./src/CMakeLists.txt
./test/CMakeLists.txt
./test/CMakeTests.cmake
./test/CMakeVFDTests.cmake
./testpar/CMakeLists.txt
./testpar/CMakeTests.cmake
./tools/CMakeLists.txt

10
Makefile.am
View File

@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
##
## Makefile.am
## Run automake to generate a Makefile.in from this file.

10
Makefile.dist
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
# This Makefile is a stub (copied from Makefile.dist) which will run
# configure and then invoke the same target in the new Makefile created

92
README.txt
View File

@ -1,38 +1,80 @@
HDF5 version 1.11.0 currently under development
HDF5 version 1.11.2 currently under development
------------------------------------------------------------------------------
Please refer to the release_docs/INSTALL file for installation instructions.
------------------------------------------------------------------------------
THE HDF GROUP
---------------
The HDF Group is the developer of HDF5®, a high-performance software library and
data format that has been adopted across multiple industries and has become a
de facto standard in scientific and research communities.
More information about The HDF Group, the HDF5 Community and the HDF5 software
project, tools and services can be found at the Group's website.
https://www.hdfgroup.org/
DOCUMENTATION
-------------
This release is fully functional for the API described in the documentation.
See the RELEASE.txt file in the release_docs/ directory for information
specific to this release of the library. Several INSTALL* files can also be
found in the release_docs/ directory: INSTALL contains instructions for
compiling and installing the library; INSTALL_parallel contains instructions
for installing the parallel version of the library; similarly-named files
contain instructions for several environments on MS Windows systems.
https://portal.hdfgroup.org/display/HDF5/The+HDF5+API
Documentation for this release can be found at the following URL:
http://www.hdfgroup.org/HDF5/doc/.
Full Documentation and Programming Resources for this release can be found at
https://portal.hdfgroup.org/display/HDF5
The following mailing lists are currently set up for HDF5 Library users:
See the RELEASE.txt file in the release_docs/ directory for information specific
to the features and updates included in this release of the library.
news - For announcements of HDF5 related developments,
not a discussion list.
Several more files are located within the release_docs/ directory with specific
details for several common platforms and configurations.
hdf-forum - For general discussion of the HDF5 library with
other users.
INSTALL - Start Here. General instructions for compiling and installing the library
INSTALL_CMAKE - instructions for building with CMake (Kitware.com)
INSTALL_parallel - instructions for building and configuring Parallel HDF5
INSTALL_Windows and INSTALL_Cygwin - MS Windows installations.
To subscribe to a list, send mail to "<list>-subscribe@lists.hdfgroup.org".
where <list> is the name of the list. For example, send a request
to subscribe to the 'news' mail list to the following address:
news-subscribe@lists.hdfgroup.org
Messages sent to the list should be addressed to "<list>@lists.hdfgroup.org".
Periodic code snapshots are provided at the following URL:
ftp://ftp.hdfgroup.uiuc.edu/pub/outgoing/hdf5/snapshots
Please read the README.txt file in that directory before working with a
library snapshot.
HELP AND SUPPORT
----------------
Information regarding Help Desk and Support services is available at
The HDF5 website is located at http://hdfgroup.org/HDF5/
https://portal.hdfgroup.org/display/support/The+HDF+Help+Desk
FORUM and NEWS
--------------
The following public forums are provided for public announcements and discussions
of interest to the general HDF5 Community.
Homepage of the Forum
https://forum.hdfgroup.org
News and Announcement
https://forum.hdfgroup.org/c/news-and-announcements-from-the-hdf-group
HDF5 and HDF4 Topics
https://forum.hdfgroup.org/c/hdf5
These forums are provided as an open and public service for searching and reading.
Posting requires completing a simple registration and allows one to join in the
conversation. Please read the following instructions pertaining to the Forum's
use and configuration
https://forum.hdfgroup.org/t/quickstart-guide-welcome-to-the-new-hdf-forum
SNAPSHOTS, PREVIOUS RELEASES AND SOURCE CODE
--------------------------------------------
Periodically development code snapshots are provided at the following URL:
https://gamma.hdfgroup.org/ftp/pub/outgoing/hdf5/snapshots/
Source packages for current and previous releases are located at:
https://portal.hdfgroup.org/display/support/Downloads
Development code is available at our BitBucket Server:
https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/browse
Bugs should be reported to help@hdfgroup.org.

11
UserMacros.cmake
View File

@ -1,3 +1,14 @@
#
# Copyright by The HDF Group.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
########################################################
# Include file for user options
########################################################

11
acsite.m4
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@ -1,17 +1,16 @@
dnl -------------------------------------------------------------------------
dnl -------------------------------------------------------------------------
dnl
dnl Copyright by The HDF Group.
dnl Copyright by the Board of Trustees of the University of Illinois.
dnl All rights reserved.
dnl
dnl This file is part of HDF5. The full HDF5 copyright notice, including
dnl terms governing use, modification, and redistribution, is contained in
dnl the files COPYING and Copyright.html. COPYING can be found at the root
dnl of the source code distribution tree; Copyright.html can be found at the
dnl root level of an installed copy of the electronic HDF5 document set and
dnl is linked from the top-level documents page. It can also be found at
dnl http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have
dnl access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
dnl the COPYING file, which can be found at the root of the source code
dnl dnl distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
dnl dnl If you do not have access to either file, you may request a copy from
dnl dnl help@hdfgroup.org.
dnl
dnl Macros for HDF5 Fortran
dnl

73
autogen.sh
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@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic document set and is
# linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access
# to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# A script to reconfigure autotools for HDF5, and to recreate other
@ -205,6 +203,39 @@ Darwin*)
;;
esac
# Run scripts that process source.
#
# These should be run before the autotools so that failures here block
# compilation.
# Run trace script
# The trace script adds H5TRACE macros to library source files. It should
# have no effect on files that don't have HDF5 API macros in them.
echo "Running trace script:"
bin/trace src/H5*.c || exit 1
echo
# Run make_err
# make_err automatically generates the H5E headers that create error message
# types for HDF5.
echo "Running error generation script:"
bin/make_err src/H5err.txt || exit 1
echo
# Run make_vers
# make_vers automatically generates the public headers that define the API version
# macros for HDF5.
echo "Running API version generation script:"
bin/make_vers src/H5vers.txt || exit 1
echo
# Run make_overflow
# make_overflow automatically generates macros for detecting overflows for type
# conversion.
echo "Running overflow macro generation script:"
bin/make_overflow src/H5overflow.txt || exit 1
echo
# Run autotools in order
#
# When available, we use the --force option to ensure all files are
@ -267,35 +298,7 @@ fi
${autoconf_cmd} || exit 1
echo
# Run scripts that process source.
# Run trace script
# The trace script adds H5TRACE macros to library source files. It should
# have no effect on files that don't have HDF5 API macros in them.
echo
echo "Running trace script:"
bin/trace src/H5*.c || exit 1
# Run make_err
# make_err automatically generates the H5E headers that create error message
# types for HDF5.
echo
echo "Running error generation script:"
bin/make_err src/H5err.txt || exit 1
# Run make_vers
# make_vers automatically generates the public headers that define the API version
# macros for HDF5.
echo
echo "Running API version generation script:"
bin/make_vers src/H5vers.txt || exit 1
# Run make_overflow
# make_overflow automatically generates macros for detecting overflows for type
# conversion.
echo
echo "Running overflow macro generation script:"
bin/make_overflow src/H5overflow.txt || exit 1
echo "*** SUCCESS ***"
echo
exit 0

11
bin/COPYING
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@ -5,12 +5,9 @@
The files and subdirectories in this directory are part of HDF5.
The full HDF5 copyright notice, including terms governing use,
modification, and redistribution, is contained in the files COPYING
and Copyright.html. COPYING can be found at the root of the source
code distribution tree; Copyright.html can be found at the root
level of an installed copy of the electronic HDF5 document set and
is linked from the top-level documents page. It can also be found
at http://www.hdfgroup.org/HDF5/doc/Copyright.html. If you do not
have access to either file, you may request a copy from
modification, and redistribution, is contained in the COPYING file
which can be found at the root of the source code distribution tree
or in https://support.hdfgroup.org/ftp/HDF5/releases. If you do
not have access to either file, you may request a copy from
help@hdfgroup.org.

10
bin/bbrelease
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Make a release of hdf5.

10
bin/buildhdf5
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Build HDF5 library by doing configure, make, and tests.
# Usage: See USAGE()

10
bin/checkapi
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
require 5.003;

10
bin/checkposix
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@ -8,12 +8,10 @@ require 5.003;
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Robb Matzke, matzke@llnl.gov
# 30 Aug 1997

12
bin/chkconfigure
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@ -5,14 +5,12 @@
##
## This file is part of HDF5. The full HDF5 copyright notice, including
## terms governing use, modification, and redistribution, is contained in
## the files COPYING and Copyright.html. COPYING can be found at the root
## of the source code distribution tree; Copyright.html can be found at the
## root level of an installed copy of the electronic HDF5 document set and
## is linked from the top-level documents page. It can also be found at
## http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have
## access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
## the COPYING file, which can be found at the root of the source code
## distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
## If you do not have access to either file, you may request a copy from
## help@hdfgroup.org.
##
# Check that all the configure files are properly genernated.
# Check that all the configure files are properly generated.
#
# Programmer: Albert Cheng
# Created Date: 2004/12/07

10
bin/chkcopyright
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Check Copyright notice.

10
bin/chkmanifest
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Check that all the files in MANIFEST exist and (if this is a

10
bin/debug-ohdr
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
require 5.003;

10
bin/dependencies
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
my $depend_file;
my $new_depend_file;

10
bin/deploy
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Deploy the HDF5 binary.
#

10
bin/distdep
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Usage: $0 [<].depend

10
bin/errors
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@ -11,12 +11,10 @@ use Text::Tabs;
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Robb Matzke, matzke@llnl.gov
# 30 Aug 1997

10
bin/gcov_script
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
# A script to generate coverage files for HDF5 using gcov.
# Configures, builds, and runs tests in-place; the output files will be placed

10
bin/genparser
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@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic document set and is
# linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access
# to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# This script runs flex/lex and bison/yacc to generate parser code for

20
bin/h5vers
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@ -12,12 +12,10 @@ use strict;
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Robb Matzke <matzke@llnl.gov>
# 17 July 1998
@ -200,7 +198,7 @@ my $H5_JAVA = $file;
$H5_JAVA =~ s/[^\/]*$/..\/java\/src\/hdf\/hdf5lib\/H5.java/;
die "unable to read file: $H5_JAVA\n" unless -r $file;
my $TESTH5_JAVA = $file;
$TESTH5_JAVA =~ s/[^\/]*$/..\/java\/test\/TestH5.java/;
$TESTH5_JAVA =~ s/[^\/]*$/..\/java\/test\/TestH5.java/;
die "unable to read file: $TESTH5_JAVA\n" unless -r $file;
my $REPACK_LAYOUT_PLUGIN_VERSION = $file;
$REPACK_LAYOUT_PLUGIN_VERSION =~ s/[^\/]*$/..\/tools\/test\/h5repack\/testfiles\/h5repack_layout.h5-plugin_version_test.ddl/;
@ -356,7 +354,7 @@ if ($HDF5CONFIGCMAKE) {
my $sub_rel_ver_str = (
$newver[3] eq ""
? sprintf("\"%s\"", "")
: sprintf("\"%s\"", "-".$newver[3].", currently under development")
: sprintf("\"%s\"", "-".$newver[3])
);
my $version_string = sprintf("\"%d.%d.%d\"", @newver[0,1,2]);
@ -379,7 +377,7 @@ if ($H5_JAVA) {
my $version_string2 = sprintf("%d, %d, %d", @newver[0,1,2]);
$data =~ s/\@version HDF5 .* <BR>/\@version HDF5 $version_string1 <BR>/;
$data =~ s/ public final static int LIB_VERSION\[\] = { \d*, \d*, \d* };/ public final static int LIB_VERSION[] = { $version_string2 };/;
$data =~ s/ public final static int LIB_VERSION\[\] = { \d*, \d*, \d* };/ public final static int LIB_VERSION[] = { $version_string2 };/;
write_file($H5_JAVA, $data);
}
@ -397,7 +395,7 @@ if ($TESTH5_JAVA) {
my $version_string2 = sprintf("int majnum = %d, minnum = %d, relnum = %d", @newver[0,1,2]);
$data =~ s/ int libversion\[\] = { .* };/ int libversion\[\] = { $version_string1 };/;
$data =~ s/ int majnum = \d*, minnum = \d*, relnum = \d*;/ $version_string2;/;
$data =~ s/ int majnum = \d*, minnum = \d*, relnum = \d*;/ $version_string2;/;
write_file($TESTH5_JAVA, $data);
}
@ -412,7 +410,7 @@ if ($REPACK_LAYOUT_PLUGIN_VERSION) {
write_file($REPACK_LAYOUT_PLUGIN_VERSION, $data);
}
# helper function to read the file for updating c++/src/cpp_doc_config,
# helper function to read the file for updating c++/src/cpp_doc_config,
# config/cmake/scripts/HDF5Config.cmake, and java files.
# The version string in that file is not at the top, so the string replacement
# is not for the first line, and reading/writing the entire file as one string

10
bin/iostats
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Usage: pipe the output of Linux's `strace' program into the stdin of

10
bin/locate_sw
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@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Try to locate the software as named in argument.

20
bin/make_err
View File

@ -9,12 +9,10 @@ $indent=4;
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Create error headers
@ -38,12 +36,10 @@ sub print_copyright ($) {
print $fh " * *\n";
print $fh " * This file is part of HDF5. The full HDF5 copyright notice, including *\n";
print $fh " * terms governing use, modification, and redistribution, is contained in *\n";
print $fh " * the files COPYING and Copyright.html. COPYING can be found at the root *\n";
print $fh " * of the source code distribution tree; Copyright.html can be found at the *\n";
print $fh " * root level of an installed copy of the electronic HDF5 document set and *\n";
print $fh " * is linked from the top-level documents page. It can also be found at *\n";
print $fh " * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *\n";
print $fh " * access to either file, you may request a copy from help\@hdfgroup.org. *\n";
print $fh " * the COPYING file, which can be found at the root of the source code *\n";
print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *\n";
print $fh " * If you do not have access to either file, you may request a copy from *\n";
print $fh " * help\@hdfgroup.org. *\n";
print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
}

20
bin/make_overflow
View File

@ -14,12 +14,10 @@ my @ctypes = ( () );
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Create assignment overflow #ifdefs
@ -67,12 +65,10 @@ sub print_copyright ($) {
print $fh " * *\n";
print $fh " * This file is part of HDF5. The full HDF5 copyright notice, including *\n";
print $fh " * terms governing use, modification, and redistribution, is contained in *\n";
print $fh " * the files COPYING and Copyright.html. COPYING can be found at the root *\n";
print $fh " * of the source code distribution tree; Copyright.html can be found at the *\n";
print $fh " * root level of an installed copy of the electronic HDF5 document set and *\n";
print $fh " * is linked from the top-level documents page. It can also be found at *\n";
print $fh " * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *\n";
print $fh " * access to either file, you may request a copy from help\@hdfgroup.org. *\n";
print $fh " * the COPYING file, which can be found at the root of the source code *\n";
print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *\n";
print $fh " * If you do not have access to either file, you may request a copy from *\n";
print $fh " * help\@hdfgroup.org. *\n";
print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
}

20
bin/make_vers
View File

@ -23,12 +23,10 @@ $indent = 2;
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Create public symbol version headers
@ -52,12 +50,10 @@ sub print_copyright ($) {
print $fh " * *\n";
print $fh " * This file is part of HDF5. The full HDF5 copyright notice, including *\n";
print $fh " * terms governing use, modification, and redistribution, is contained in *\n";
print $fh " * the files COPYING and Copyright.html. COPYING can be found at the root *\n";
print $fh " * of the source code distribution tree; Copyright.html can be found at the *\n";
print $fh " * root level of an installed copy of the electronic HDF5 document set and *\n";
print $fh " * is linked from the top-level documents page. It can also be found at *\n";
print $fh " * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *\n";
print $fh " * access to either file, you may request a copy from help\@hdfgroup.org. *\n";
print $fh " * the COPYING file, which can be found at the root of the source code *\n";
print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *\n";
print $fh " * If you do not have access to either file, you may request a copy from *\n";
print $fh " * help\@hdfgroup.org. *\n";
print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
}

10
bin/mkdirs
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# This is a small program which will create directories n-levels deep.
# You just call it with something like:

10
bin/newer
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Compare the modification time of file argument 1 against other file arguments.
# Return true (0) if argument 1 is newer than all others, otherwise return

10
bin/output_filter.sh
View File

@ -3,12 +3,10 @@
##
## This file is part of HDF5. The full HDF5 copyright notice, including
## terms governing use, modification, and redistribution, is contained in
## the files COPYING and Copyright.html. COPYING can be found at the root
## of the source code distribution tree; Copyright.html can be found at the
## root level of an installed copy of the electronic HDF5 document set and
## is linked from the top-level documents page. It can also be found at
## http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
## access to either file, you may request a copy from help@hdfgroup.org.
## the COPYING file, which can be found at the root of the source code
## distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
## If you do not have access to either file, you may request a copy from
## help@hdfgroup.org.
# This contains function definitions of output filtering.
# This file should only be sourced in by another shell script.

10
bin/pkgscrpts/h5rmflags
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
## Remove paths to libraries used to build HDF5 when packaging HDF5

10
bin/pkgscrpts/makeHDF5BinaryTarfiles.pl
View File

@ -7,12 +7,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
#
#

20
bin/release
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Make a release of hdf5.
@ -216,12 +214,12 @@ tar2cmakezip()
fi
# step 2: add batch file for building CMake on window
cp /mnt/scr1/pre-release/hdf5/CMake/build-VS2012-32.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/build-VS2012-64.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/build-VS2013-32.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/build-VS2013-64.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/build-VS2015-32.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/build-VS2015-64.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/build-VS2017-32.bat $cmziptmpdir
cp /mnt/scr1/pre-release/hdf5/CMake/build-VS2017-64.bat $cmziptmpdir
# step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmziptmpdir
@ -447,6 +445,12 @@ fi
bin/chkmanifest || fail=yes
if [ "X$fail" = "Xyes" ]; then
if [ $check = yes ]; then
echo ""
echo "Note! If you are running bin/release in a development branch"
echo "later than v 1.8 the MANIFEST check is expected to fail when"
echo "autogen.sh has not been run successfully. Either run autogen.sh "
echo "with /usr/hdf/bin/AUTOTOOLS at the beginning of PATH or add the"
echo "--nocheck argument to the bin/release command."
exit 1
else
echo "Continuing anyway..."

10
bin/restore.sh
View File

@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic document set and is
# linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access
# to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# A script to clean up the action of autogen.sh

10
bin/runtest
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# run the hdf5/bin/snapshot

10
bin/snapshot
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
# This script should be run nightly from cron. It checks out the source
# from the source repository and compares it against the previous

10
bin/snapshot_version
View File

@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# default version for snapshot test

10
bin/switch_maint_mode
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Switch AM_MAINTAINER_MODE value in configure.ac
# Usage: See USAGE()

10
bin/timekeeper
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
##
# As a time keeper of the remote daily test process launched by runtest.
# It sleeps for a certain time and then wakes up to hangup those processes

29
bin/trace
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
##
require 5.003;
$Source = "";
@ -78,7 +76,7 @@ $Source = "";
"off_t" => "o",
"H5O_type_t" => "Ot",
"H5P_class_t" => "p",
"hobj_ref_t" => "r",
"hobj_ref_t" => "r",
"H5R_type_t" => "Rt",
"char" => "s",
"unsigned char" => "s",
@ -126,7 +124,7 @@ $Source = "";
"H5G_iterate_t" => "x",
"H5G_info_t" => "x",
"H5I_free_t" => "x",
"H5I_search_func_t" => "x",
"H5I_search_func_t" => "x",
"H5L_class_t" => "x",
"H5L_elink_traverse_t" => "x",
"H5L_iterate_t" => "x",
@ -163,6 +161,8 @@ $Source = "";
##############################################################################
# Print an error message.
#
my $found_errors = 0;
sub errmesg ($$@) {
my ($file, $func, @mesg) = @_;
my ($mesg) = join "", @mesg;
@ -172,6 +172,8 @@ sub errmesg ($$@) {
$lineno = tr/\n/\n/;
}
$found_errors = 1;
print "$file: in function \`$func\':\n";
print "$file:$lineno: $mesg\n";
}
@ -341,4 +343,13 @@ for $file (@ARGV) {
}
}
printf "Finished processing HDF5 API calls\n"
if ($found_errors eq 1) {
printf "\n";
printf "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n";
printf "*** ERRORS FOUND *** ERRORS FOUND *** ERRORS FOUND ****\n";
printf "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n";
exit 1;
} else {
printf "Finished processing HDF5 API calls\n";
}

11
bin/yodconfigure
View File

@ -1,16 +1,15 @@
#!/bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Fix configure file so that it can launch configure testing executable
# via the proper launching command, e.g., yod. (Thus the name yodconfigure

36
c++/CMakeLists.txt
View File

@ -1,44 +1,18 @@
cmake_minimum_required (VERSION 3.2.2)
PROJECT (HDF5_CPP)
cmake_minimum_required (VERSION 3.10)
project (HDF5_CPP CXX)
#-----------------------------------------------------------------------------
# Apply Definitions to compiler in this directory and below
#-----------------------------------------------------------------------------
add_definitions (${HDF_EXTRA_C_FLAGS})
#-----------------------------------------------------------------------------
# Generate configure file
#-----------------------------------------------------------------------------
configure_file (${HDF_RESOURCES_DIR}/H5cxx_config.h.in
${HDF5_BINARY_DIR}/H5cxx_pubconf.h
)
#-----------------------------------------------------------------------------
# Setup Include directories
#-----------------------------------------------------------------------------
INCLUDE_DIRECTORIES (${HDF5_CPP_SOURCE_DIR}/src)
INCLUDE_DIRECTORIES (${HDF5_BINARY_DIR})
#-----------------------------------------------------------------------------
# Parallel/MPI, prevent spurious cpp/cxx warnings
#-----------------------------------------------------------------------------
if (H5_HAVE_PARALLEL)
add_definitions ("-DMPICH_SKIP_MPICXX")
add_definitions ("-DMPICH_IGNORE_CXX_SEEK")
endif ()
add_subdirectory (${HDF5_CPP_SOURCE_DIR}/src ${HDF5_CPP_BINARY_DIR}/src)
add_subdirectory (src)
#-----------------------------------------------------------------------------
# Build the CPP Examples
#-----------------------------------------------------------------------------
if (HDF5_BUILD_EXAMPLES)
add_subdirectory (${HDF5_CPP_SOURCE_DIR}/examples ${HDF5_CPP_BINARY_DIR}/examples)
add_subdirectory (examples)
endif ()
#-----------------------------------------------------------------------------
# Build the CPP unit tests
#-----------------------------------------------------------------------------
if (BUILD_TESTING)
add_subdirectory (${HDF5_CPP_SOURCE_DIR}/test ${HDF5_CPP_BINARY_DIR}/test)
add_subdirectory (test)
endif ()

11
c++/COPYING
View File

@ -5,12 +5,9 @@
The files and subdirectories in this directory are part of HDF5.
The full HDF5 copyright notice, including terms governing use,
modification, and redistribution, is contained in the files COPYING
and Copyright.html. COPYING can be found at the root of the source
code distribution tree; Copyright.html can be found at the root
level of an installed copy of the electronic HDF5 document set and
is linked from the top-level documents page. It can also be found
at http://www.hdfgroup.org/HDF5/doc/Copyright.html. If you do not
have access to either file, you may request a copy from
modification, and redistribution, is contained in the COPYING file
which can be found at the root of the source code distribution tree
or in https://support.hdfgroup.org/ftp/HDF5/releases. If you do
not have access to either file, you may request a copy from
help@hdfgroup.org.

10
c++/Makefile.am
View File

@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
##
## Makefile.am
## Run automake to generate a Makefile.in from this file.

8
c++/examples/CMakeLists.txt
View File

@ -1,5 +1,5 @@
cmake_minimum_required (VERSION 3.2.2)
PROJECT (HDF5_CPP_EXAMPLES)
cmake_minimum_required (VERSION 3.10)
project (HDF5_CPP_EXAMPLES CXX)
# --------------------------------------------------------------------
# Notes: When creating examples they should be prefixed
@ -34,7 +34,7 @@ set (tutr_examples
foreach (example ${examples})
add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp)
TARGET_NAMING (cpp_ex_${example} STATIC)
set_property(TARGET cpp_ex_${example} APPEND PROPERTY INCLUDE_DIRECTORIES "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}")
TARGET_C_PROPERTIES (cpp_ex_${example} STATIC " " " ")
target_link_libraries (cpp_ex_${example} ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp)
@ -42,7 +42,7 @@ endforeach ()
foreach (example ${tutr_examples})
add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp)
TARGET_NAMING (cpp_ex_${example} STATIC)
set_property(TARGET cpp_ex_${example} APPEND PROPERTY INCLUDE_DIRECTORIES "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}")
TARGET_C_PROPERTIES (cpp_ex_${example} STATIC " " " ")
target_link_libraries (cpp_ex_${example} ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp)

15
c++/examples/CMakeTests.cmake
View File

@ -1,3 +1,14 @@
#
# Copyright by The HDF Group.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
##############################################################################
##############################################################################
@ -40,7 +51,7 @@
endif ()
set (last_test "CPP_ex_${example}")
endforeach ()
#the following dependicies are handled by the order of the files
#the following dependencies are handled by the order of the files
# SET_TESTS_PROPERTIES(CPP_ex_readdata PROPERTIES DEPENDS CPP_ex_create)
# SET_TESTS_PROPERTIES(CPP_ex_chunks PROPERTIES DEPENDS CPP_ex_extend_ds)
@ -80,7 +91,7 @@
endif ()
set (last_test "CPP_ex_${example}")
endforeach ()
#the following dependicies are handled by the order of the files
#the following dependencies are handled by the order of the files
# SET_TESTS_PROPERTIES(CPP_ex_h5tutr_crtatt PROPERTIES DEPENDS CPP_ex_h5tutr_crtdat)
# SET_TESTS_PROPERTIES(CPP_ex_h5tutr_rdwt PROPERTIES DEPENDS CPP_ex_h5tutr_crtdat)
# SET_TESTS_PROPERTIES(CPP_ex_h5tutr_crtgrpd PROPERTIES DEPENDS CPP_ex_h5tutr_crtgrpar)

10
c++/examples/Makefile.am
View File

@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
##
## Makefile.am
## Run automake to generate a Makefile.in from this file.

16
c++/examples/chunks.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -211,21 +209,21 @@ int main (void)
// catch failure caused by the H5File operations
catch( FileIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch( DataSetIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataSpaceIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
return 0;

18
c++/examples/compound.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -176,28 +174,28 @@ int main(void)
// catch failure caused by the H5File operations
catch( FileIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch( DataSetIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataSpaceIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataTypeIException error )
{
error.printError();
error.printErrorStack();
return -1;
}

18
c++/examples/create.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -101,28 +99,28 @@ int main (void)
// catch failure caused by the H5File operations
catch( FileIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch( DataSetIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataSpaceIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataTypeIException error )
{
error.printError();
error.printErrorStack();
return -1;
}

18
c++/examples/extend_ds.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -206,28 +204,28 @@ int main (void)
// catch failure caused by the H5File operations
catch( FileIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch( DataSetIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataSpaceIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataTypeIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
return 0;

18
c++/examples/h5group.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -190,28 +188,28 @@ int main(void)
// catch failure caused by the H5File operations
catch( FileIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch( DataSetIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataSpaceIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the Attribute operations
catch( AttributeIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
return 0;

16
c++/examples/h5tutr_cmprss.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -134,21 +132,21 @@ int main (void)
// catch failure caused by the H5File operations
catch(FileIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch(DataSetIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch(DataSpaceIException error)
{
error.printError();
error.printErrorStack();
return -1;
}

18
c++/examples/h5tutr_crtatt.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -61,28 +59,28 @@ int main (void)
// catch failure caused by the H5File operations
catch( DataSpaceIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the H5File operations
catch( AttributeIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the H5File operations
catch( FileIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch( DataSetIException error )
{
error.printError();
error.printErrorStack();
return -1;
}

16
c++/examples/h5tutr_crtdat.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -55,21 +53,21 @@ int main (void)
// catch failure caused by the H5File operations
catch(FileIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch(DataSetIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch(DataSpaceIException error)
{
error.printError();
error.printErrorStack();
return -1;
}

14
c++/examples/h5tutr_crtgrp.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -50,13 +48,13 @@ int main(void)
// catch failure caused by the H5File operations
catch(FileIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the Group operations
catch(GroupIException error)
{
error.printError();
error.printErrorStack();
return -1;
}

14
c++/examples/h5tutr_crtgrpar.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -70,14 +68,14 @@ int main(void)
// catch failure caused by the File operations
catch(FileIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the Group operations
catch(GroupIException error)
{
error.printError();
error.printErrorStack();
return -1;
}

18
c++/examples/h5tutr_crtgrpd.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -108,27 +106,27 @@ int main(void)
// catch failure caused by the H5File operations
catch(FileIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch(DataSetIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch(DataSpaceIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the Group operations
catch(GroupIException error)
{
error.printError();
error.printErrorStack();
return -1;
}

16
c++/examples/h5tutr_extend.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -149,21 +147,21 @@ int main (void)
// catch failure caused by the H5File operations
catch(FileIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch(DataSetIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch(DataSpaceIException error)
{
error.printError();
error.printErrorStack();
return -1;
}

14
c++/examples/h5tutr_rdwt.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -60,14 +58,14 @@ int main (void)
// catch failure caused by the H5File operations
catch(FileIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch(DataSetIException error)
{
error.printError();
error.printErrorStack();
return -1;
}

16
c++/examples/h5tutr_subset.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -155,21 +153,21 @@ int main (void)
// catch failure caused by the H5File operations
catch(FileIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch(DataSetIException error)
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch(DataSpaceIException error)
{
error.printError();
error.printErrorStack();
return -1;
}

18
c++/examples/readdata.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
//
@ -184,28 +182,28 @@ int main (void)
// catch failure caused by the H5File operations
catch( FileIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch( DataSetIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataSpaceIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataTypeIException error )
{
error.printError();
error.printErrorStack();
return -1;
}

10
c++/examples/run-c++-ex.sh.in
View File

@ -5,12 +5,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# This file: run-c++-ex.sh

10
c++/examples/testh5c++.sh.in
View File

@ -6,12 +6,10 @@
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Tests for the h5c++ compiler tool
# Created: Albert Cheng, 2007/3/14

16
c++/examples/writedata.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
@ -308,21 +306,21 @@ int main (void)
// catch failure caused by the H5File operations
catch( FileIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSet operations
catch( DataSetIException error )
{
error.printError();
error.printErrorStack();
return -1;
}
// catch failure caused by the DataSpace operations
catch( DataSpaceIException error )
{
error.printError();
error.printErrorStack();
return -1;
}

35293
c++/src/C2Cppfunction_map.mht Normal file
View File

File diff suppressed because it is too large Load Diff

76
c++/src/CMakeLists.txt
View File

@ -1,5 +1,18 @@
cmake_minimum_required (VERSION 3.2.2)
PROJECT (HDF5_CPP_SRC)
cmake_minimum_required (VERSION 3.10)
project (HDF5_CPP_SRC CXX)
#-----------------------------------------------------------------------------
# Parallel/MPI, prevent spurious cpp/cxx warnings
#-----------------------------------------------------------------------------
if (H5_HAVE_PARALLEL)
add_definitions ("-DMPICH_SKIP_MPICXX")
add_definitions ("-DMPICH_IGNORE_CXX_SEEK")
endif ()
#-----------------------------------------------------------------------------
# Apply Definitions to compiler in this directory and below
#-----------------------------------------------------------------------------
add_definitions (${HDF_EXTRA_C_FLAGS})
#-----------------------------------------------------------------------------
# Generate configure file
@ -33,6 +46,7 @@ set (CPP_SOURCES
${HDF5_CPP_SRC_SOURCE_DIR}/H5IdComponent.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5IntType.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5LaccProp.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5LcreatProp.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5Library.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5Location.cpp
${HDF5_CPP_SRC_SOURCE_DIR}/H5Object.cpp
@ -70,6 +84,7 @@ set (CPP_HDRS
${HDF5_CPP_SRC_SOURCE_DIR}/H5Include.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5IntType.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5LaccProp.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5LcreatProp.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5Library.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5Location.h
${HDF5_CPP_SRC_SOURCE_DIR}/H5Object.h
@ -81,10 +96,11 @@ set (CPP_HDRS
)
add_library (${HDF5_CPP_LIB_TARGET} STATIC ${CPP_SOURCES} ${CPP_HDRS})
set_property(TARGET ${HDF5_CPP_LIB_TARGET} APPEND PROPERTY INCLUDE_DIRECTORIES "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}")
TARGET_C_PROPERTIES (${HDF5_CPP_LIB_TARGET} STATIC " " " ")
target_link_libraries (${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
target_link_libraries (${HDF5_CPP_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET})
set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_CPP_LIB_TARGET}")
H5_SET_LIB_OPTIONS (${HDF5_CPP_LIB_TARGET} ${HDF5_CPP_LIB_NAME} STATIC)
H5_SET_LIB_OPTIONS (${HDF5_CPP_LIB_TARGET} ${HDF5_CPP_LIB_NAME} STATIC 0)
set_target_properties (${HDF5_CPP_LIB_TARGET} PROPERTIES
FOLDER libraries/cpp
INTERFACE_INCLUDE_DIRECTORIES "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>"
@ -93,10 +109,11 @@ set (install_targets ${HDF5_CPP_LIB_TARGET})
if (BUILD_SHARED_LIBS)
add_library (${HDF5_CPP_LIBSH_TARGET} SHARED ${CPP_SOURCES} ${CPP_HDRS})
set_property(TARGET ${HDF5_CPP_LIBSH_TARGET} APPEND PROPERTY INCLUDE_DIRECTORIES "${HDF5_SRC_DIR};${HDF5_BINARY_DIR}")
TARGET_C_PROPERTIES (${HDF5_CPP_LIBSH_TARGET} SHARED " " " ")
target_link_libraries (${HDF5_CPP_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
target_link_libraries (${HDF5_CPP_LIBSH_TARGET} PUBLIC ${HDF5_LIBSH_TARGET})
set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_CPP_LIBSH_TARGET}")
H5_SET_LIB_OPTIONS (${HDF5_CPP_LIBSH_TARGET} ${HDF5_CPP_LIB_NAME} SHARED ${HDF5_CXX_PACKAGE_SOVERSION})
H5_SET_LIB_OPTIONS (${HDF5_CPP_LIBSH_TARGET} ${HDF5_CPP_LIB_NAME} SHARED "CXX")
set_target_properties (${HDF5_CPP_LIBSH_TARGET} PROPERTIES
FOLDER libraries/cpp
COMPILE_DEFINITIONS "H5_BUILT_AS_DYNAMIC_LIB"
@ -139,3 +156,50 @@ if (HDF5_EXPORTED_TARGETS)
INCLUDES DESTINATION include
)
endif ()
#-----------------------------------------------------------------------------
# Create pkgconfig files
#-----------------------------------------------------------------------------
set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
set (_PKG_CONFIG_LIBNAME "${HDF5_CPP_LIB_CORENAME}")
set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
set (_PKG_CONFIG_LIBS_PRIVATE)
set (_PKG_CONFIG_LIBS "${_PKG_CONFIG_LIBS} -l${HDF5_CPP_LIB_CORENAME}")
if (BUILD_SHARED_LIBS)
set (_PKG_CONFIG_SH_LIBS "${_PKG_CONFIG_SH_LIBS} -l${HDF5_CPP_LIB_CORENAME}")
endif ()
set (_PKG_CONFIG_REQUIRES "${HDF5_LIB_CORENAME}")
set (_PKG_CONFIG_REQUIRES_PRIVATE "${HDF5_LIB_CORENAME}")
configure_file (
${HDF_RESOURCES_DIR}/libhdf5.pc.in
${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_CPP_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
@ONLY
)
install (
FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_CPP_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig
COMPONENT cpplibraries
)
if (NOT WIN32)
set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
@ONLY
)
install (
FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5c++
DESTINATION ${HDF5_INSTALL_BIN_DIR}
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT cpplibraries
)
endif ()

11
c++/src/H5AbstractDs.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <string>
@ -24,6 +22,7 @@
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5DxferProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"

24
c++/src/H5AbstractDs.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __AbstractDs_H
@ -33,7 +31,7 @@ class DataSpace;
and DataSet.
It provides a collection of services that are common to both Attribute
and DataSet. AbstractDs inherits from H5Object.
and DataSet.
*/
class H5_DLLCPP AbstractDs {
public:
@ -76,18 +74,6 @@ class H5_DLLCPP AbstractDs {
// Default constructor
AbstractDs();
// *** Deprecation warning ***
// The following two constructors are no longer appropriate after the
// data member "id" had been moved to the sub-classes.
// The copy constructor is a noop and is removed in 1.8.15 and the
// other will be removed from 1.10 release, and then from 1.8 if its
// removal does not raise any problems in two 1.10 releases.
// Mar 2016 -BMR, AbstractDs(const hid_t h5_id);
// Copy constructor
// AbstractDs( const AbstractDs& original );
private:
// This member function is implemented by DataSet and Attribute - pure virtual.
virtual hid_t p_get_type() const = 0;

10
c++/src/H5Alltypes.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
// This header file simply serves as a container to hold the

41
c++/src/H5ArrayType.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <string>
@ -21,6 +19,7 @@
#include "H5PropList.h"
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
@ -47,7 +46,7 @@ ArrayType::ArrayType(const hid_t existing_id) : DataType(existing_id) {}
//--------------------------------------------------------------------------
// Function: ArrayType copy constructor
///\brief Copy constructor: makes a copy of the original ArrayType object.
///\brief Copy constructor: same HDF5 object as \a original
// Programmer Binh-Minh Ribler - May 2004
//--------------------------------------------------------------------------
ArrayType::ArrayType(const ArrayType& original) : DataType(original) {}
@ -121,7 +120,6 @@ ArrayType::ArrayType(const H5Location& loc, const H5std_string& dtype_name) : Da
// Closes the id on the lhs object first with setId, then copies
// each data member from the rhs object. (Issue HDFFV-9562)
// Programmer Binh-Minh Ribler - Mar 2016
// Modification
//--------------------------------------------------------------------------
ArrayType& ArrayType::operator=(const ArrayType& rhs)
{
@ -140,15 +138,33 @@ ArrayType& ArrayType::operator=(const ArrayType& rhs)
return(*this);
}
//--------------------------------------------------------------------------
// Function: ArrayType::decode
///\brief Returns an ArrayType object via DataType* by decoding the
/// binary object description of this type.
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - Aug 2017
//--------------------------------------------------------------------------
DataType* ArrayType::decode() const
{
hid_t encoded_arrtype_id = H5I_INVALID_HID;
try {
encoded_arrtype_id = p_decode();
}
catch (DataTypeIException &err) {
throw;
}
ArrayType *encoded_arrtype = new ArrayType;
encoded_arrtype->p_setId(encoded_arrtype_id);
return(encoded_arrtype);
}
//--------------------------------------------------------------------------
// Function: ArrayType::getArrayNDims
///\brief Returns the number of dimensions for an array datatype.
///\return Number of dimensions
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - May 2004
// Modification
// Apr, 2016
// Became const.
//--------------------------------------------------------------------------
int ArrayType::getArrayNDims() const
{
@ -169,9 +185,6 @@ int ArrayType::getArrayNDims() const
///\return Number of dimensions
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - May 2004
// Modification
// Apr, 2016
// Became const.
//--------------------------------------------------------------------------
int ArrayType::getArrayDims(hsize_t* dims) const
{

19
c++/src/H5ArrayType.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5ArrayType_H
@ -22,9 +20,8 @@ namespace H5 {
/*! \class ArrayType
\brief Class ArrayType inherits from DataType and provides wrappers for
the HDF5's Array Datatypes.
Inheritance: DataType -> H5Object -> H5Location -> IdComponent
*/
// Inheritance: DataType -> H5Object -> H5Location -> IdComponent
class H5_DLLCPP ArrayType : public DataType {
public:
// Constructor that creates a new array data type based on the
@ -38,6 +35,10 @@ class H5_DLLCPP ArrayType : public DataType {
ArrayType(const H5Location& loc, const char* name);
ArrayType(const H5Location& loc, const H5std_string& name);
// Returns an ArrayType object via DataType* by decoding the
// binary object description of this type.
virtual DataType* decode() const;
// Returns the number of dimensions of this array datatype.
int getArrayNDims() const;
//int getArrayNDims(); // removed 1.8.18 and 1.10.1
@ -49,7 +50,7 @@ class H5_DLLCPP ArrayType : public DataType {
///\brief Returns this class name.
virtual H5std_string fromClass () const { return("ArrayType"); }
// Copy constructor: makes copy of the original object.
// Copy constructor: same as the original ArrayType.
ArrayType(const ArrayType& original);
// Constructor that takes an existing id

25
c++/src/H5AtomType.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <string>
@ -21,6 +19,7 @@
#include "H5PropList.h"
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
@ -48,7 +47,7 @@ AtomType::AtomType(const hid_t existing_id) : DataType(existing_id) {}
//--------------------------------------------------------------------------
// Function: AtomType copy constructor
///\brief Copy constructor: makes a copy of the original AtomType object.
///\brief Copy constructor: same HDF5 object as \a original
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
AtomType::AtomType(const AtomType& original) : DataType(original) {}
@ -177,8 +176,8 @@ size_t AtomType::getPrecision() const
///\param precision - IN: Number of bits of precision
///\exception H5::DataTypeIException
///\par Description
/// For information, please see C layer Reference Manuat at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-SetPrecision
/// For information, please refer to the H5Tset_precision API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void AtomType::setPrecision(size_t precision) const
@ -197,8 +196,8 @@ void AtomType::setPrecision(size_t precision) const
///\return Offset value
///\exception H5::DataTypeIException
///\par Description
/// For information, please see C layer Reference Manuat at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-GetOffset
/// For information, please refer to the H5Tget_offset API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
// Modification
// 12/05/00: due to C API change
@ -224,8 +223,8 @@ int AtomType::getOffset() const
///\param offset - IN: Offset of first significant bit
///\exception H5::DataTypeIException
///\par Description
/// For information, please see C layer Reference Manuat at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-SetOffset
/// For information, please refer to the H5Tset_offset API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void AtomType::setOffset(size_t offset) const

15
c++/src/H5AtomType.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5AtomType_H
@ -25,9 +23,8 @@ namespace H5 {
AtomType provides operations on HDF5 atomic datatypes. It also inherits
from DataType.
Inheritance: DataType -> H5Object -> H5Location -> IdComponent
*/
// Inheritance: DataType -> H5Object -> H5Location -> IdComponent
class H5_DLLCPP AtomType : public DataType {
public:
// Returns the byte order of an atomic datatype.
@ -63,7 +60,7 @@ class H5_DLLCPP AtomType : public DataType {
virtual H5std_string fromClass () const { return("AtomType"); }
#ifndef DOXYGEN_SHOULD_SKIP_THIS
// Copy constructor - makes copy of the original object
// Copy constructor: same as the original AtomType.
AtomType(const AtomType& original);
// Noop destructor

13
c++/src/H5Attribute.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifdef OLD_HEADER_FILENAME
@ -29,6 +27,7 @@
#include "H5FcreatProp.h"
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
@ -52,7 +51,7 @@ Attribute::Attribute() : AbstractDs(), H5Location(), id(H5I_INVALID_HID) {}
//--------------------------------------------------------------------------
// Function: Attribute copy constructor
///\brief Copy constructor: makes a copy of the original Attribute object.
///\brief Copy constructor: same HDF5 object as \a original
///\param original - IN: Original Attribute object to copy
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------

15
c++/src/H5Attribute.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5Attribute_H
@ -26,13 +24,12 @@ namespace H5 {
Attribute and DataSet are derivatives of AbstractDs. Attribute also
inherits from H5Location because an attribute can be used to specify
a location.
Inheritance: multiple H5Location/AbstractDs -> IdComponent
*/
// Inheritance: multiple H5Location/AbstractDs -> IdComponent
class H5_DLLCPP Attribute : public AbstractDs, public H5Location {
public:
// Copy constructor: makes a copy of an existing Attribute object.
// Copy constructor: same as the original Attribute.
Attribute(const Attribute& original);
// Default constructor

12
c++/src/H5Classes.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5Classes_H
@ -33,10 +31,10 @@ namespace H5 {
class DataSpace;
class AtomType;
class PredType;
class EnumType;
class IntType;
class FloatType;
class StrType;
class EnumType;
class CompType;
class AbstractDs;
class DataSet;

16
c++/src/H5CommonFG.cpp
View File

@ -5,18 +5,16 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <string>
#include "H5Include.h"
#include "H5private.h" // for HDstrcpy
#include "H5Include.h"
#include "H5Exception.h"
#include "H5IdComponent.h"
#include "H5DataSpace.h"
@ -24,6 +22,7 @@
#include "H5DxferProp.h"
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
@ -66,7 +65,8 @@ DataType CommonFG::openDataType(const char* name) const
throwException("openDataType", "H5Topen2 failed");
// No failure, create and return the DataType object
DataType data_type(type_id);
DataType data_type;
f_DataType_setId(&data_type, type_id);
return(data_type);
}

24
c++/src/H5CommonFG.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __CommonFG_H
@ -26,10 +24,9 @@ class ArrayType;
class VarLenType;
/*! \class CommonFG
\brief \a CommonFG is an abstract base class of H5File and H5Group.
It provides common operations of H5File and H5Group.
\brief \a CommonFG is an abstract base class of H5Group.
*/
/* Note: This class is being deprecated gradually. */
class H5_DLLCPP CommonFG {
public:
// Opens a generic named datatype in this location.
@ -89,3 +86,12 @@ class H5_DLLCPP CommonFG {
#endif // __CommonFG_H
/***************************************************************************
Design Note
===========
September 2017:
This class used to be base class of H5File as well, until the
restructure that moved H5File to be subclass of H5Group.
*/

73
c++/src/H5CompType.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <string>
@ -22,6 +20,7 @@
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5DxferProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
@ -41,7 +40,7 @@ CompType::CompType() : DataType() {}
//--------------------------------------------------------------------------
// Function: CompType copy constructor
///\brief Copy constructor: makes copy of the original CompType object
///\brief Copy constructor: same HDF5 object as \a original
///\param original - IN: Original CompType instance
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
@ -125,6 +124,27 @@ CompType::CompType(const H5Location& loc, const H5std_string& dtype_name) : Data
id = p_opentype(loc, dtype_name.c_str());
}
//--------------------------------------------------------------------------
// Function: CompType::decode
///\brief Returns a CompType object via DataType* by decoding the
/// binary object description of this datatype.
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - Aug 2017
//--------------------------------------------------------------------------
DataType* CompType::decode() const
{
hid_t encoded_cmptype_id = H5I_INVALID_HID;
try {
encoded_cmptype_id = p_decode();
}
catch (DataTypeIException &err) {
throw;
}
CompType *encoded_cmptype = new CompType;
encoded_cmptype->p_setId(encoded_cmptype_id);
return(encoded_cmptype);
}
//--------------------------------------------------------------------------
// Function: CompType::getNmembers
///\brief Returns the number of members in this compound datatype.
@ -197,7 +217,6 @@ int CompType::getMemberIndex(const H5std_string& name) const
/// respect to the beginning of the compound data type datum.
///\param member_num - IN: Zero-based index of the member
///\return Byte offset
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - 2000
// Description
/// Members are stored in no particular order with numbers 0
@ -285,7 +304,7 @@ DataType CompType::getMemberDataType(unsigned member_num) const
ArrayType CompType::getMemberArrayType(unsigned member_num) const
{
try {
ArrayType arraytype(p_get_member_type(member_num));
ArrayType arraytype;
f_DataType_setId(&arraytype, p_get_member_type(member_num));
return(arraytype);
}
@ -305,10 +324,10 @@ ArrayType CompType::getMemberArrayType(unsigned member_num) const
//--------------------------------------------------------------------------
CompType CompType::getMemberCompType(unsigned member_num) const
{
try {
CompType comptype(p_get_member_type(member_num));
try {
CompType comptype;
f_DataType_setId(&comptype, p_get_member_type(member_num));
return(comptype);
return(comptype);
}
catch (DataTypeIException& E) {
throw DataTypeIException("CompType::getMemberCompType", E.getDetailMsg());
@ -326,10 +345,10 @@ CompType CompType::getMemberCompType(unsigned member_num) const
//--------------------------------------------------------------------------
EnumType CompType::getMemberEnumType(unsigned member_num) const
{
try {
EnumType enumtype(p_get_member_type(member_num));
try {
EnumType enumtype;
f_DataType_setId(&enumtype, p_get_member_type(member_num));
return(enumtype);
return(enumtype);
}
catch (DataTypeIException& E) {
throw DataTypeIException("CompType::getMemberEnumType", E.getDetailMsg());
@ -347,10 +366,10 @@ EnumType CompType::getMemberEnumType(unsigned member_num) const
//--------------------------------------------------------------------------
IntType CompType::getMemberIntType(unsigned member_num) const
{
try {
IntType inttype(p_get_member_type(member_num));
try {
IntType inttype;
f_DataType_setId(&inttype, p_get_member_type(member_num));
return(inttype);
return(inttype);
}
catch (DataTypeIException& E) {
throw DataTypeIException("CompType::getMemberIntType", E.getDetailMsg());
@ -368,10 +387,10 @@ IntType CompType::getMemberIntType(unsigned member_num) const
//--------------------------------------------------------------------------
FloatType CompType::getMemberFloatType(unsigned member_num) const
{
try {
FloatType floatype(p_get_member_type(member_num));
try {
FloatType floatype;
f_DataType_setId(&floatype, p_get_member_type(member_num));
return(floatype);
return(floatype);
}
catch (DataTypeIException& E) {
throw DataTypeIException("CompType::getMemberFloatType", E.getDetailMsg());
@ -389,10 +408,10 @@ FloatType CompType::getMemberFloatType(unsigned member_num) const
//--------------------------------------------------------------------------
StrType CompType::getMemberStrType(unsigned member_num) const
{
try {
StrType strtype(p_get_member_type(member_num));
try {
StrType strtype;
f_DataType_setId(&strtype, p_get_member_type(member_num));
return(strtype);
return(strtype);
}
catch (DataTypeIException& E) {
throw DataTypeIException("CompType::getMemberStrType", E.getDetailMsg());
@ -410,10 +429,10 @@ StrType CompType::getMemberStrType(unsigned member_num) const
//--------------------------------------------------------------------------
VarLenType CompType::getMemberVarLenType(unsigned member_num) const
{
try {
VarLenType varlentype(p_get_member_type(member_num));
try {
VarLenType varlentype;
f_DataType_setId(&varlentype, p_get_member_type(member_num));
return(varlentype);
return(varlentype);
}
catch (DataTypeIException& E) {
throw DataTypeIException("CompType::getMemberVarLenType", E.getDetailMsg());

19
c++/src/H5CompType.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5CompType_H
@ -22,9 +20,8 @@ namespace H5 {
/*! \class CompType
\brief CompType is a derivative of a DataType and operates on HDF5
compound datatypes.
Inheritance: DataType -> H5Object -> H5Location -> IdComponent
*/
// Inheritance: DataType -> H5Object -> H5Location -> IdComponent
class H5_DLLCPP CompType : public DataType {
public:
// Default constructor
@ -39,13 +36,17 @@ class H5_DLLCPP CompType : public DataType {
// Gets the compound datatype of the specified dataset
CompType(const DataSet& dataset); // H5Dget_type
// Copy constructor - makes a copy of original object
// Copy constructor - same as the original CompType.
CompType(const CompType& original);
// Constructors that open a compound datatype, given a location.
CompType(const H5Location& loc, const char* name);
CompType(const H5Location& loc, const H5std_string& name);
// Returns a CompType object via DataType* by decoding the binary
// object description of this type.
virtual DataType* decode() const;
// Returns the type class of the specified member of this compound
// datatype. It provides to the user a way of knowing what type
// to create another datatype of the same class

11
c++/src/H5Cpp.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5Cpp_H
@ -27,6 +25,7 @@
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5DxferProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"

24
c++/src/H5CppDoc.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5CppDoc_H
@ -28,12 +26,9 @@
*
* The C++ API provides C++ wrappers for the HDF5 C Library.
*
* It is assumed that the user has knowledge of the
* <a href="https://www.hdfgroup.org/HDF5/doc/H5.format.html">
* HDF5 file format</a> and its components.
* For more information on the HDF5 C Library, see the
* <a href="https://www.hdfgroup.org/HDF5/doc/index.html">
* HDF5 Software Documentation</a> page.
* It is assumed that the user has knowledge of the HDF5 file format and its
* components. For more information on the HDF5 C Library, please refer to
* the HDF5 Software Documentation page.
*
* Because the HDF5 C Library maps very well to
* the object oriented design approach, classes in the C++ API can
@ -52,13 +47,14 @@
Dataspace Interface (H5S) DataSpace
Datatype Interface (H5T) DataType and subclasses
\endverbatim
*
* This <a href="./C2Cppfunction_map.mht">
* table </a> provides a map from the C APIs to the C++ member functions.
* <br />
* \section install_sec Installation
*
* The HDF5 C++ API is included with the HDF5 source code and can
* be obtained from
* <a href="https://www.hdfgroup.org/HDF5/release/obtainsrc.html">
* https://www.hdfgroup.org/HDF5/release/obtainsrc.html</a>.
*
* Please refer to the release_docs/INSTALL file under the top directory
* of the HDF5 source code for information about installing, building,

26
c++/src/H5DataSet.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifdef OLD_HEADER_FILENAME
@ -30,6 +28,7 @@
#include "H5OcreatProp.h"
#include "H5DxferProp.h"
#include "H5DcreatProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
@ -69,7 +68,7 @@ DataSet::DataSet(const hid_t existing_id) : H5Object(), AbstractDs(), id(existin
//--------------------------------------------------------------------------
// Function: DataSet copy constructor
///\brief Copy constructor: makes a copy of the original DataSet object.
///\brief Copy constructor: same HDF5 object as \a original
///\param original - IN: DataSet instance to copy
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
@ -92,9 +91,6 @@ DataSet::DataSet(const DataSet& original) : H5Object(), AbstractDs(), id(origina
/// \c loc can be DataSet, Group, H5File, or named DataType, that
/// is a datatype that has been named by DataType::commit.
// Programmer Binh-Minh Ribler - Oct, 2006
// Modification
// Jul, 2008
// Added for application convenience.
//--------------------------------------------------------------------------
DataSet::DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), AbstractDs(), id(H5I_INVALID_HID)
{
@ -111,9 +107,6 @@ DataSet::DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type, co
///\param plist - IN: Property list - default to PropList::DEFAULT
///\exception H5::ReferenceException
// Programmer Binh-Minh Ribler - Oct, 2006
// Modification
// Jul, 2008
// Added for application convenience.
//--------------------------------------------------------------------------
DataSet::DataSet(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), AbstractDs(), id(H5I_INVALID_HID)
{
@ -579,10 +572,8 @@ int DataSet::iterateElems(void* buf, const DataType& type, const DataSpace& spac
///\param size - IN: Array containing the new magnitude of each dimension
///\exception H5::DataSetIException
///\par Description
/// For more information, please see the Description section in
/// C layer Reference Manual at:
///\par
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5D.html#Dataset-Extend
/// For information, please refer to the H5Dset_extent API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DataSet::extend(const hsize_t* size) const
@ -602,7 +593,6 @@ void DataSet::extend(const hsize_t* size) const
///\param space - IN: Dataspace describing memory buffer & containing selection to use
///\exception H5::DataSetIException
// Programmer Binh-Minh Ribler - 2014
// Modification
//--------------------------------------------------------------------------
void DataSet::fillMemBuf(const void *fill, const DataType& fill_type, void *buf, const DataType& buf_type, const DataSpace& space) const
{

15
c++/src/H5DataSet.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5DataSet_H
@ -25,9 +23,8 @@ namespace H5 {
An datasets has many characteristics similar to an attribute, thus both
Attribute and DataSet are derivatives of AbstractDs. DataSet also
inherits from H5Object because a dataset is an HDF5 object.
Inheritance: multiple H5Object/AbstractDs -> H5Location -> IdComponent
*/
// Inheritance: multiple H5Object/AbstractDs -> H5Location -> IdComponent
class H5_DLLCPP DataSet : public H5Object, public AbstractDs {
public:
@ -96,7 +93,7 @@ class H5_DLLCPP DataSet : public H5Object, public AbstractDs {
// Default constructor.
DataSet();
// Copy constructor.
// Copy constructor - same as the original DataSet.
DataSet(const DataSet& original);
// Creates a copy of an existing DataSet using its id.

32
c++/src/H5DataSpace.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifdef OLD_HEADER_FILENAME
@ -135,7 +133,7 @@ DataSpace::DataSpace(const hid_t existing_id) : IdComponent(), id(existing_id)
//--------------------------------------------------------------------------
// Function: DataSpace copy constructor
///\brief Copy constructor: makes a copy of the original DataSpace object.
///\brief Copy constructor: same HDF5 object as \a original
///\param original - IN: DataSpace object to copy
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
@ -468,9 +466,8 @@ hssize_t DataSpace::getSelectElemNpoints () const
///\param buf - IN: List of element points selected
///\exception H5::DataSpaceIException
///\par Description
/// For more information, please refer to the C layer Reference
/// Manual at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5S.html#Dataspace-SelectElemPointList
/// For information, please refer to the C API
/// H5Sget_select_elem_pointlist in the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DataSpace::getSelectElemPointlist (hsize_t startpoint, hsize_t numpoints, hsize_t *buf) const
@ -492,9 +489,8 @@ void DataSpace::getSelectElemPointlist (hsize_t startpoint, hsize_t numpoints, h
/// the coordinates of the diagonally opposite corner
///\exception H5::DataSpaceIException
///\par Description
/// For more information, please refer to the C layer Reference
/// Manual at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5S.html#Dataspace-SelectBounds
/// For information, please refer to the H5Sget_select_bounds API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DataSpace::getSelectBounds (hsize_t* start, hsize_t* end) const
@ -518,9 +514,8 @@ void DataSpace::getSelectBounds (hsize_t* start, hsize_t* end) const
/// specifying the coordinates of the elements being selected
///\exception H5::DataSpaceIException
///\par Description
/// For more information, please refer to the C layer Reference
/// Manual at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5S.html#Dataspace-SelectElements
/// For information, please refer to the H5Sselect_elements API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DataSpace::selectElements (H5S_seloper_t op, const size_t num_elements, const hsize_t *coord) const
@ -600,9 +595,8 @@ bool DataSpace::selectValid () const
///\param block - IN: Size of block in the hyperslab - default to \c NULL
///\exception H5::DataSpaceIException
///\par Description
/// For more information, please refer to the C layer Reference
/// Manual at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5S.html#Dataspace-SelectHyperslab
/// For information, please refer to the H5Sselect_hyperslab API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DataSpace::selectHyperslab(H5S_seloper_t op, const hsize_t *count, const hsize_t *start, const hsize_t *stride, const hsize_t *block) const

15
c++/src/H5DataSpace.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5DataSpace_H
@ -22,9 +20,8 @@ namespace H5 {
/*! \class DataSpace
\brief Class DataSpace inherits from IdComponent and provides wrappers for
the HDF5's dataspaces.
Inheritance: IdComponent
*/
// Inheritance: IdComponent
class H5_DLLCPP DataSpace : public IdComponent {
public:
///\brief Default DataSpace objects
@ -39,7 +36,7 @@ class H5_DLLCPP DataSpace : public IdComponent {
// Creates a DataSpace object using an existing dataspace id.
DataSpace(const hid_t space_id);
// Copy constructor: makes a copy of the original DataSpace object.
// Copy constructor - same as the original DataSpace.
DataSpace(const DataSpace& original);
// Assignment operator

169
c++/src/H5DataType.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifdef OLD_HEADER_FILENAME
@ -30,6 +28,7 @@
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5DxferProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
@ -50,7 +49,7 @@ using std::endl;
///\brief Default constructor: Creates a stub datatype
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
DataType::DataType() : H5Object(), id(H5I_INVALID_HID) {}
DataType::DataType() : H5Object(), id(H5I_INVALID_HID), encoded_buf(NULL), buf_size(0) {}
//--------------------------------------------------------------------------
// Function: DataType overloaded constructor
@ -65,7 +64,7 @@ DataType::DataType() : H5Object(), id(H5I_INVALID_HID) {}
// Removed second argument, "predefined", after changing to the
// new ref counting mechanism that relies on C's ref counting.
//--------------------------------------------------------------------------
DataType::DataType(const hid_t existing_id) : H5Object(), id(existing_id)
DataType::DataType(const hid_t existing_id) : H5Object(), id(existing_id), encoded_buf(NULL), buf_size(0)
{
incRefCount(); // increment number of references to this id
}
@ -78,7 +77,7 @@ DataType::DataType(const hid_t existing_id) : H5Object(), id(existing_id)
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
DataType::DataType(const H5T_class_t type_class, size_t size) : H5Object()
DataType::DataType(const H5T_class_t type_class, size_t size) : H5Object(), encoded_buf(NULL), buf_size(0)
{
// Call C routine to create the new datatype
id = H5Tcreate(type_class, size);
@ -98,11 +97,8 @@ DataType::DataType(const H5T_class_t type_class, size_t size) : H5Object()
///\param plist - IN: Property list - default to PropList::DEFAULT
///\exception H5::ReferenceException
// Programmer Binh-Minh Ribler - Oct, 2006
// Modification
// Jul, 2008
// Added for application convenience.
//--------------------------------------------------------------------------
DataType::DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object()
DataType::DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), encoded_buf(NULL), buf_size(0)
{
id = H5Location::p_dereference(loc.getId(), ref, ref_type, plist, "constructor - by dereference");
}
@ -121,7 +117,7 @@ DataType::DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type,
// Jul, 2008
// Added for application convenience.
//--------------------------------------------------------------------------
/* DataType::DataType(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), id(H5I_INVALID_HID)
/* DataType::DataType(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), id(H5I_INVALID_HID), encoded_buf(NULL), buf_size(0)
{
id = H5Location::p_dereference(attr.getId(), ref, ref_type, plist, "constructor - by dereference");
}
@ -129,10 +125,10 @@ DataType::DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type,
//--------------------------------------------------------------------------
// Function: DataType copy constructor
///\brief Copy constructor: makes a copy of the original DataType object
///\brief Copy constructor: same HDF5 object as \a original
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
DataType::DataType(const DataType& original) : H5Object(), id(original.id)
DataType::DataType(const DataType& original) : H5Object(), id(original.id), encoded_buf(NULL), buf_size(0)
{
incRefCount(); // increment number of references to this id
}
@ -150,7 +146,7 @@ DataType::DataType(const DataType& original) : H5Object(), id(original.id)
// unnecessarily and will produce undefined behavior.
// -BMR, Apr 2015
//--------------------------------------------------------------------------
DataType::DataType(const PredType& pred_type) : H5Object()
DataType::DataType(const PredType& pred_type) : H5Object(), encoded_buf(NULL), buf_size(0)
{
// Call C routine to copy the datatype
id = H5Tcopy(pred_type.getId());
@ -172,7 +168,7 @@ DataType::DataType(const PredType& pred_type) : H5Object()
// improve usability.
// -BMR, Dec 2016
//--------------------------------------------------------------------------
DataType::DataType(const H5Location& loc, const char *dtype_name) : H5Object()
DataType::DataType(const H5Location& loc, const char *dtype_name) : H5Object(), encoded_buf(NULL), buf_size(0)
{
id = p_opentype(loc, dtype_name);
}
@ -191,7 +187,7 @@ DataType::DataType(const H5Location& loc, const char *dtype_name) : H5Object()
// improve usability.
// -BMR, Dec 2016
//--------------------------------------------------------------------------
DataType::DataType(const H5Location& loc, const H5std_string& dtype_name) : H5Object()
DataType::DataType(const H5Location& loc, const H5std_string& dtype_name) : H5Object(), encoded_buf(NULL), buf_size(0)
{
id = p_opentype(loc, dtype_name.c_str());
}
@ -249,6 +245,104 @@ void DataType::copy(const DataSet& dset)
throw DataTypeIException(inMemFunc("copy"), "H5Tcopy failed");
}
#ifndef DOXYGEN_SHOULD_SKIP_THIS
//--------------------------------------------------------------------------
// Function: DataType::p_decode
// Purpose Returns an id of a type by decoding the binary object
/// description of this datatype.
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - Aug 2017
//--------------------------------------------------------------------------
hid_t DataType::p_decode() const
{
// Make sure that the buffer can be decoded
if (encoded_buf == NULL)
{
throw DataTypeIException("DataType::p_decode", "No encoded buffer");
}
// Call C function to decode the binary object description
hid_t encoded_dtype_id = H5Tdecode(encoded_buf);
// If H5Tdecode fails, raise exception
if (encoded_dtype_id < 0)
{
throw DataTypeIException("DataType::p_decode", "H5Tdecode failed");
}
else
{
return(encoded_dtype_id);
}
}
#endif // DOXYGEN_SHOULD_SKIP_THIS
//--------------------------------------------------------------------------
// Function: DataType::decode
///\brief Returns a DataType instance by decoding the binary object
/// description of this datatype.
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - Aug 2017
//--------------------------------------------------------------------------
DataType* DataType::decode() const
{
hid_t encoded_dtype_id = H5I_INVALID_HID;
try {
encoded_dtype_id = p_decode();
}
catch (DataTypeIException &err) {
throw;
}
DataType *encoded_dtype = new DataType;
encoded_dtype->p_setId(encoded_dtype_id);
return(encoded_dtype);
}
//--------------------------------------------------------------------------
// Function: DataType::encode
///\brief Creates a binary object description of this datatype.
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - Aug 2017
//--------------------------------------------------------------------------
void DataType::encode()
{
// Call H5Tencode passing in null to determine the size of the buffer
herr_t ret_value = H5Tencode(id, NULL, &buf_size);
if (ret_value < 0)
{
throw DataTypeIException("DataType::encode", "Failed to get buf_size");
}
// Allocate buffer and call C function again to encode
if (buf_size > 0)
{
encoded_buf = (unsigned char *)HDcalloc((size_t)1, buf_size);
ret_value = H5Tencode(id, encoded_buf, &buf_size);
if (ret_value < 0)
{
throw DataTypeIException("DataType::encode", "H5Tencode failed");
}
}
else
{
throw DataTypeIException("DataType::encode", "Failed to allocate buffer for encoding");
}
}
//--------------------------------------------------------------------------
// Function: DataType::hasBinaryDesc
///\brief Determines whether this datatype has a binary object
/// description.
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - Aug 2017
//--------------------------------------------------------------------------
bool DataType::hasBinaryDesc() const
{
if (encoded_buf != NULL)
return true;
else
return false;
}
//--------------------------------------------------------------------------
// Function: DataType::operator=
///\brief Assignment operator
@ -559,8 +653,8 @@ DataType DataType::getSuper() const
/// destination datatypes.
///\exception H5::DataTypeIException
///\par Description
/// For more information, please see:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5T.html#Datatype-Register
/// For information, please refer to the H5Tregister API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DataType::registerFunc(H5T_pers_t pers, const char* name, const DataType& dest, H5T_conv_t func) const
@ -702,6 +796,28 @@ bool DataType::detectClass(H5T_class_t cls) const
}
}
//--------------------------------------------------------------------------
// Function: DataType::detectClass (static)
///\brief Checks whether a predtype is a certain class of datatype.
///\return true if this predtype is the specified type class, and false,
/// otherwise.
///\exception H5::DataTypeIException
// Programmer Binh-Minh Ribler - August, 2017
//--------------------------------------------------------------------------
bool DataType::detectClass(const PredType& pred_type, H5T_class_t cls)
{
htri_t ret_value = H5Tdetect_class(pred_type.getId(), cls);
if (ret_value > 0)
return true;
else if (ret_value == 0)
return false;
else
{
throw DataTypeIException("detectClass on PredType",
"H5Tdetect_class returns negative value");
}
}
//--------------------------------------------------------------------------
// Function: DataType::isVariableStr
///\brief Check whether this datatype is a variable-length string.
@ -783,7 +899,7 @@ hid_t DataType::p_opentype(const H5Location& loc, const char *dtype_name) const
// Call C function to open the named datatype at this location
hid_t ret_value = H5Topen2(loc.getId(), dtype_name, H5P_DEFAULT);
if (ret_value < 0)
throw DataTypeIException("DataType constructor", "H5Topen2 failed");
throw DataTypeIException(inMemFunc("constructor"), "H5Topen2 failed");
return(ret_value);
}
@ -829,8 +945,15 @@ void DataType::close()
{
throw DataTypeIException(inMemFunc("close"), "H5Tclose failed");
}
// reset the id
// Reset the id
id = H5I_INVALID_HID;
// Free and reset buffer of encoded object description if it's been used
if (encoded_buf != NULL)
{
HDfree(encoded_buf);
buf_size = 0;
}
}
}

46
c++/src/H5DataType.h
View File

@ -6,12 +6,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef __H5DataType_H
@ -25,20 +23,23 @@ namespace H5 {
DataType inherits from H5Object because a named datatype is an HDF5
object and is a base class of ArrayType, AtomType, CompType, EnumType,
and VarLenType.
Inheritance: DataType -> H5Object -> H5Location -> IdComponent
*/
// Inheritance: DataType -> H5Object -> H5Location -> IdComponent
class H5_DLLCPP DataType : public H5Object {
public:
// Creates a datatype given its class and size
DataType(const H5T_class_t type_class, size_t size);
// Copy constructor: makes a copy of the original object
// Copy constructor - same as the original DataType.
DataType(const DataType& original);
// Creates a copy of a predefined type
DataType(const PredType& pred_type);
// Constructors to open a generic named datatype at a given location.
DataType(const H5Location& loc, const char* name);
DataType(const H5Location& loc, const H5std_string& name);
// Creates a datatype by way of dereference.
DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT);
// DataType(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT, const PropList& plist = PropList::DEFAULT);
@ -52,6 +53,13 @@ class H5_DLLCPP DataType : public H5Object {
// Copies the datatype of dset to this datatype object.
void copy(const DataSet& dset);
// Returns a DataType instance by decoding the binary object
// description of this datatype.
virtual DataType* decode() const;
// Creates a binary object description of this datatype.
void encode();
// Returns the datatype class identifier.
H5T_class_t getClass() const;
@ -109,6 +117,7 @@ class H5_DLLCPP DataType : public H5Object {
// Checks whether this datatype contains (or is) a certain type class.
bool detectClass(H5T_class_t cls) const;
static bool detectClass(const PredType& pred_type, H5T_class_t cls);
// Checks whether this datatype is a variable-length string.
bool isVariableStr() const;
@ -119,19 +128,15 @@ class H5_DLLCPP DataType : public H5Object {
///\brief Returns this class name.
virtual H5std_string fromClass () const { return("DataType"); }
// From CommonFG then H5Location
// Constructors to open a generic named datatype at a given location.
DataType(const H5Location& loc, const char* name);
DataType(const H5Location& loc, const H5std_string& name);
// End of From CommonFG then H5Location
// Creates a copy of an existing DataType using its id
DataType(const hid_t type_id);
// Default constructor
DataType();
// Determines whether this datatype has a binary object description.
bool hasBinaryDesc() const;
// Gets the datatype id.
virtual hid_t getId() const;
@ -142,6 +147,10 @@ class H5_DLLCPP DataType : public H5Object {
#ifndef DOXYGEN_SHOULD_SKIP_THIS
hid_t id; // HDF5 datatype id
// Returns an id of a type by decoding the binary object
// description of this datatype.
hid_t p_decode() const;
// Sets the datatype id.
virtual void p_setId(const hid_t new_id);
@ -151,6 +160,11 @@ class H5_DLLCPP DataType : public H5Object {
#endif // DOXYGEN_SHOULD_SKIP_THIS
private:
// Buffer for binary object description of this datatype, allocated
// in DataType::encode and used in DataType::decode
unsigned char *encoded_buf;
size_t buf_size;
// Friend function to set DataType id. For library use only.
friend void f_DataType_setId(DataType* dtype, hid_t new_id);

41
c++/src/H5DcreatProp.cpp
View File

@ -5,12 +5,10 @@
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <string>
@ -22,6 +20,7 @@
#include "H5PropList.h"
#include "H5OcreatProp.h"
#include "H5DcreatProp.h"
#include "H5LcreatProp.h"
#include "H5LaccProp.h"
#include "H5Location.h"
#include "H5Object.h"
@ -96,7 +95,7 @@ DSetCreatPropList::DSetCreatPropList() : ObjCreatPropList(H5P_DATASET_CREATE) {}
//--------------------------------------------------------------------------
// Function: DSetCreatPropList copy constructor
///\brief Copy constructor: makes a copy of the original
///\brief Copy constructor: same HDF5 object as \a original
/// DSetCreatPropList object
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
@ -160,8 +159,8 @@ int DSetCreatPropList::getChunk(int max_ndims, hsize_t* dim) const
///\param layout - IN: Type of storage layout for raw data
///\exception H5::PropListIException
///\par Description
/// For information on valid layout types, please refer to
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetLayout
/// For information, please refer to the H5Pset_layout API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DSetCreatPropList::setLayout(H5D_layout_t layout) const
@ -235,9 +234,8 @@ void DSetCreatPropList::setDeflate(int level) const
///\par Description
/// The associate C function sets an SZIP compression filter,
/// H5Z_FILTER_SZIP, for a dataset. For more information about
/// SZIP and usage, please refer to the C layer Reference
/// Manual at:
/// http://hdfgroup.org/HDF5/doc/RM_H5P.html#Property-SetSzip
/// SZIP and usage, please refer to the H5Pset_szip API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - Jan, 2007
//--------------------------------------------------------------------------
void DSetCreatPropList::setSzip(unsigned int options_mask, unsigned int pixels_per_block) const
@ -257,9 +255,8 @@ void DSetCreatPropList::setSzip(unsigned int options_mask, unsigned int pixels_p
///\par Description
/// The associate C function sets an Nbit compression filter,
/// H5Z_FILTER_NBIT, for a dataset. For more information about
/// Nbit compression, please refer to the C layer Reference
/// Manual at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-setNbit
/// Nbit compression, please refer to the H5Pset_nbit API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - Apr, 2016
//--------------------------------------------------------------------------
void DSetCreatPropList::setNbit() const
@ -286,8 +283,7 @@ void DSetCreatPropList::setNbit() const
/// according to the actual dataset datatype.
///\par
/// For information on setting fill value, please refer to the
/// C layer Reference Manual at:
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetFillValue
/// H5Pset_fill_value API in the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DSetCreatPropList::setFillValue(const DataType& fvalue_type, const void* value) const
@ -536,9 +532,8 @@ bool DSetCreatPropList::allFiltersAvail() const
///
///\exception H5::PropListIException
///\par Description
/// Please refer to the Reference Manual of \c H5Pset_shuffle for
/// details.
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetShuffle
/// For information, please refer to the H5Pset_shuffle API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
void DSetCreatPropList::setShuffle() const
@ -754,7 +749,8 @@ void DSetCreatPropList::getExternal(unsigned idx, size_t name_size, char* name,
/// an unlimited selection
///\exception H5::PropListIException
///\par Description
/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetVirtual
/// For information, please refer to the H5Pset_virtual API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - Mar, 2017
//--------------------------------------------------------------------------
void DSetCreatPropList::setVirtual(const DataSpace& vspace, const char *src_fname, const char *src_dsname, const DataSpace& sspace) const
@ -781,7 +777,8 @@ void DSetCreatPropList::setVirtual(const DataSpace& vspace, const char *src_fnam
/// an unlimited selection
///\exception H5::PropListIException
///\par Description
/// https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetVirtual
/// For information, please refer to the H5Pset_virtual API in
/// the HDF5 C Reference Manual.
// Programmer Binh-Minh Ribler - Mar, 2017
//--------------------------------------------------------------------------
void DSetCreatPropList::setVirtual(const DataSpace& vspace, const H5std_string src_fname, const H5std_string src_dsname, const DataSpace& sspace) const

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