hdf5/tools/h5diff/h5difftst.c

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <stdio.h>
#include <stdlib.h>
#include "hdf5.h"
#include "H5private.h"
/* diff test*/
static int do_test_1(const char *file1, const char *file2);
static int do_test_2(const char *file1, const char *file2);
static int do_test_3(const char *file1, const char *file2);
static int do_test_4(const char *file1, const char *file2);
static int do_test_5(const char *file1, const char *file2);
static int write_dataset( hid_t loc_id, int rank, hsize_t *dims, const char *dset_name,
hid_t type_id, void *buf );
int main(int UNUSED argc, const UNUSED char *argv[])
{
do_test_1("file1.h5","file2.h5");
do_test_2("file3.h5",NULL);
do_test_3("file4.h5",NULL);
do_test_4("file5.h5",NULL);
do_test_5("file6.h5",NULL);
return 0;
}
/*-------------------------------------------------------------------------
* Function: write_dataset
*
* Purpose: utility function to write a dataset
*
* Return:
*
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
*
* Date: April 7, 2003
*
*-------------------------------------------------------------------------
*/
static
int write_dataset( hid_t loc_id, int rank, hsize_t *dims, const char *dset_name,
hid_t type_id, void *buf )
{
hid_t dataset_id;
hid_t space_id;
herr_t status;
/* Create a buf space */
space_id = H5Screate_simple(rank,dims,NULL);
/* Create a dataset */
dataset_id = H5Dcreate(loc_id,dset_name,type_id,space_id,H5P_DEFAULT);
/* Write the buf */
if ( buf )
status = H5Dwrite(dataset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf);
/* Close */
status = H5Dclose(dataset_id);
status = H5Sclose(space_id);
assert(status>=0);
return status;
}
/*
# ##############################################################################
# # Common usage
# ##############################################################################
# 1.0
-h
# 1.1
file1.h5 file2.h5 g1/dset1 g1/dset2
# 1.2
file1.h5 file2.h5 -n 2 g1/dset1 g1/dset2
# 1.3
file1.h5 file2.h5 -d 5 g1/dset3 g1/dset4
# 1.4
file1.h5 file2.h5 -p 0.05 g1/dset3 g1/dset4
# 1.5
file1.h5 file2.h5 -r g1/dset1 g1/dset2
# 1.6
file1.h5 file2.h5
# ##############################################################################
# # not comparable types
# ##############################################################################
# 2.0
file3.h5 file3.h5 dset group
# 2.1
file3.h5 file3.h5 dset link
# 2.2
file3.h5 file3.h5 dset type
# 2.3
file3.h5 file3.h5 group group
# 2.4
file3.h5 file3.h5 type type
# 2.5
file3.h5 file3.h5 link link
# ##############################################################################
# # Class issues
# ##############################################################################
# 3.0
file4.h5 file4.h5 string
# 3.1
file4.h5 file4.h5 bitfield
# 3.2
file4.h5 file4.h5 opaque
# 3.3
file4.h5 file4.h5 compound
# 3.4
file4.h5 file4.h5 ref
# 3.5
file4.h5 file4.h5 enum
# 3.6
file4.h5 file4.h5 vlen
# 3.7
file4.h5 file4.h5 array
# 3.8
file4.h5 file4.h5 integer float
# ##############################################################################
# # Dimensions
# ##############################################################################
# 4.0
file5.h5 file5.h5 dset1 dset2
# 4.1
file5.h5 file5.h5 dset3 dset4
# 4.2
file5.h5 file5.h5 dset5 dset6
# ##############################################################################
# # Dataset types
# ##############################################################################
# 5.0
file6.h5 file6.h5 dset0a dset0b
# 5.1
file6.h5 file6.h5 dset1a dset1b
# 5.2
file6.h5 file6.h5 dset2a dset2b
# 5.3
file6.h5 file6.h5 dset3a dset4b
# 5.4
file6.h5 file6.h5 dset4a dset4b
# 5.5
file6.h5 file6.h5 dset5a dset5b
# 5.6
file6.h5 file6.h5 dset6a dset6b
# 5.7
file6.h5 file6.h5 dset7a dset7b
# 5.8
file6.h5 file6.h5 dset8a dset8b
# ##############################################################################
# # Error messages
# ##############################################################################
# 6.0: Check if the command line number of arguments is less than 3
h5diff_test1.h5
# 6.1: Check for invalid options
h5diff_test1.h5 h5diff_test2.h5 -x
# ##############################################################################
# # -d
# ##############################################################################
# 6.2: no value
file1.h5 file2.h5 -d g1/dset3 g1/dset4
# 6.3: negative value
file1.h5 file2.h5 -d -4 g1/dset3 g1/dset4
# 6.4: zero
file1.h5 file2.h5 -d 0 g1/dset3 g1/dset4
# 6.5: non number
file1.h5 file2.h5 -d u g1/dset3 g1/dset4
# 6.6: hexadecimal
file1.h5 file2.h5 -d 0x1 g1/dset3 g1/dset4
# 6.7: string
file1.h5 file2.h5 -d "1" g1/dset3 g1/dset4
# 6.8: repeated option
file1.h5 file2.h5 -d 1 -d 2 g1/dset3 g1/dset4
# 6.9: number larger than biggest difference
file1.h5 file2.h5 -d 200 g1/dset3 g1/dset4
# 6.10: number smaller than smallest difference
file1.h5 file2.h5 -d 1 g1/dset3 g1/dset4
# ##############################################################################
# # -p
# ##############################################################################
# 6.11: no value
file1.h5 file2.h5 -p g1/dset3 g1/dset4
# 6.12: negative value
file1.h5 file2.h5 -p -4 g1/dset3 g1/dset4
# 6.13: zero
file1.h5 file2.h5 -p 0 g1/dset3 g1/dset4
# 6.14: non number
file1.h5 file2.h5 -p u g1/dset3 g1/dset4
# 6.15: hexadecimal
file1.h5 file2.h5 -p 0x1 g1/dset3 g1/dset4
# 6.16: string
file1.h5 file2.h5 -p "0.21" g1/dset3 g1/dset4
# 6.17: repeated option
file1.h5 file2.h5 -p 0.21 -p 0.22 g1/dset3 g1/dset4
# 6.18: number larger than biggest difference
file1.h5 file2.h5 -p 2 g1/dset3 g1/dset4
# 6.19: number smaller than smallest difference
file1.h5 file2.h5 -p 0.005 g1/dset3 g1/dset4
# ##############################################################################
# # -n
# ##############################################################################
# 6.20: no value
file1.h5 file2.h5 -n g1/dset3 g1/dset4
# 6.21: negative value
file1.h5 file2.h5 -n -4 g1/dset3 g1/dset4
# 6.22: zero
file1.h5 file2.h5 -n 0 g1/dset3 g1/dset4
# 6.23: non number
file1.h5 file2.h5 -n u g1/dset3 g1/dset4
# 6.24: hexadecimal
file1.h5 file2.h5 -n 0x1 g1/dset3 g1/dset4
# 6.25: string
file1.h5 file2.h5 -n "2" g1/dset3 g1/dset4
# 6.26: repeated option
file1.h5 file2.h5 -n 2 -n 3 g1/dset3 g1/dset4
# 6.27: number larger than biggest difference
file1.h5 file2.h5 -n 200 g1/dset3 g1/dset4
# 6.28: number smaller than smallest difference
file1.h5 file2.h5 -n 1 g1/dset3 g1/dset4
# ##############################################################################
# # non valid files
# ##############################################################################
file1.h6 file2.h6
*/
/*-------------------------------------------------------------------------
* Basic review tests
*-------------------------------------------------------------------------
*/
static
int do_test_1(const char *file1, const char *file2)
{
hid_t file1_id, file2_id;
hid_t group1_id, group2_id, group3_id;
herr_t status;
hsize_t dims[2] = { 3,2 };
/* Test */
double data1[3][2] = {{1,1},{1,1},{1,1}};
double data2[3][2] = {{1,1.1},{1.01,1.001},{1.0001,1.000000001}};
double data3[3][2] = {{100,110},{100,100},{100,100}};
double data4[3][2] = {{110,100},{90,80},{140,200}};
/*-------------------------------------------------------------------------
* Create two files
*-------------------------------------------------------------------------
*/
file1_id = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
file2_id = H5Fcreate (file2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/* Create groups */
group1_id = H5Gcreate(file1_id, "g1", 0);
group2_id = H5Gcreate(file2_id, "g1", 0);
group3_id = H5Gcreate(file2_id, "g2", 0);
write_dataset(group1_id,2,dims,"dset1",H5T_NATIVE_DOUBLE,data1);
write_dataset(group2_id,2,dims,"dset2",H5T_NATIVE_DOUBLE,data2);
write_dataset(group1_id,2,dims,"dset3",H5T_NATIVE_DOUBLE,data3);
write_dataset(group2_id,2,dims,"dset4",H5T_NATIVE_DOUBLE,data4);
write_dataset(group2_id,2,dims,"dset1",H5T_NATIVE_DOUBLE,data2);
/*-------------------------------------------------------------------------
* Close
*-------------------------------------------------------------------------
*/
status = H5Gclose(group1_id);
status = H5Gclose(group2_id);
status = H5Gclose(group3_id);
status = H5Fclose(file1_id);
status = H5Fclose(file2_id);
return status;
}
/*-------------------------------------------------------------------------
* Compare different types: H5G_DATASET, H5G_TYPE, H5G_GROUP, H5G_LINK
*-------------------------------------------------------------------------
*/
static
int do_test_2(const char *file1, const char UNUSED *file2)
{
hid_t file1_id;
hid_t group_id;
hid_t type_id;
herr_t status;
hsize_t dims[1]={1};
/* Compound datatype */
typedef struct s_t
{
int a;
float b;
} s_t;
/*-------------------------------------------------------------------------
* Create one file
*-------------------------------------------------------------------------
*/
file1_id = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* H5G_DATASET
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,1,dims,"dset",H5T_NATIVE_INT,0);
/*-------------------------------------------------------------------------
* H5G_GROUP
*-------------------------------------------------------------------------
*/
group_id = H5Gcreate(file1_id, "group", 0);
status = H5Gclose(group_id);
/*-------------------------------------------------------------------------
* H5G_TYPE
*-------------------------------------------------------------------------
*/
/* Create a memory compound datatype */
type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_INT);
H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT);
/* Commit compound datatype and close it */
H5Tcommit(file1_id, "type", type_id);
H5Tclose(type_id);
/*-------------------------------------------------------------------------
* H5G_LINK
*-------------------------------------------------------------------------
*/
status = H5Glink(file1_id, H5G_LINK_SOFT, "dset", "link");
/*-------------------------------------------------------------------------
* Close
*-------------------------------------------------------------------------
*/
status = H5Fclose(file1_id);
return status;
}
/*-------------------------------------------------------------------------
* Check for non supported classes. Supported classes are H5T_INTEGER and H5T_FLOAT
* Non supported classes are
* H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE,
* H5T_ENUM, H5T_VLEN, H5T_ARRAY
*-------------------------------------------------------------------------
*/
static
int do_test_3(const char *file1, const char UNUSED *file2)
{
hid_t file1_id;
hid_t dataset_id;
hid_t space_id;
hid_t type_id;
hsize_t dims[1]={1};
herr_t status;
int val;
/* Compound datatype */
typedef struct s_t
{
int a;
float b;
} s_t;
typedef enum
{
E_RED,
E_GREEN
} e_t;
/*-------------------------------------------------------------------------
* Create a file
*-------------------------------------------------------------------------
*/
file1_id = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* H5T_STRING
*-------------------------------------------------------------------------
*/
space_id = H5Screate(H5S_SCALAR);
type_id = H5Tcopy(H5T_C_S1);
dataset_id = H5Dcreate(file1_id,"string",type_id,space_id,H5P_DEFAULT);
status = H5Dclose(dataset_id);
status = H5Sclose(space_id);
status = H5Tclose(type_id);
/*-------------------------------------------------------------------------
* H5T_BITFIELD
*-------------------------------------------------------------------------
*/
type_id = H5Tcopy(H5T_STD_B8LE);
write_dataset(file1_id,1,dims,"bitfield",type_id,0);
status = H5Tclose(type_id);
/*-------------------------------------------------------------------------
* H5T_OPAQUE
*-------------------------------------------------------------------------
*/
type_id = H5Tcreate(H5T_OPAQUE, 1);
status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
write_dataset(file1_id,1,dims,"opaque",type_id,0);
status = H5Tclose(type_id);
/*-------------------------------------------------------------------------
* H5T_COMPOUND
*-------------------------------------------------------------------------
*/
type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_INT);
H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT);
write_dataset(file1_id,1,dims,"compound",type_id,0);
status = H5Tclose(type_id);
/*-------------------------------------------------------------------------
* H5T_REFERENCE
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,1,dims,"ref",H5T_STD_REF_OBJ,0);
/*-------------------------------------------------------------------------
* H5T_ENUM
*-------------------------------------------------------------------------
*/
type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
H5Tenum_insert(type_id, "RED", (val = 0, &val));
H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
write_dataset(file1_id,1,dims,"enum",type_id,0);
status = H5Tclose(type_id);
/*-------------------------------------------------------------------------
* H5T_VLEN
*-------------------------------------------------------------------------
*/
type_id = H5Tvlen_create(H5T_NATIVE_INT);
write_dataset(file1_id,1,dims,"vlen",type_id,0);
status = H5Tclose(type_id);
/*-------------------------------------------------------------------------
* H5T_ARRAY
*-------------------------------------------------------------------------
*/
type_id = H5Tarray_create(H5T_NATIVE_INT,1,dims,NULL);
write_dataset(file1_id,1,dims,"array",type_id,0);
status = H5Tclose(type_id);
/*-------------------------------------------------------------------------
* H5T_INTEGER vs H5T_FLOAT
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,1,dims,"integer",H5T_NATIVE_INT,0);
write_dataset(file1_id,1,dims,"float",H5T_NATIVE_FLOAT,0);
/*-------------------------------------------------------------------------
* Close
*-------------------------------------------------------------------------
*/
status = H5Fclose(file1_id);
return status;
}
/*-------------------------------------------------------------------------
* Dimension issues
*-------------------------------------------------------------------------
*/
static
int do_test_4(const char *file1, const char UNUSED *file2)
{
hid_t file1_id;
hid_t dataset_id;
hid_t space_id;
hid_t plist_id;
herr_t status;
hsize_t dims1 [1]={7};
hsize_t dims2 [4]={2,2,2,2};
hsize_t dims21[4]={2,2,2,3};
/*-------------------------------------------------------------------------
* Create a file
*-------------------------------------------------------------------------
*/
file1_id = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* rank
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,1,dims1,"dset1",H5T_NATIVE_INT,NULL);
write_dataset(file1_id,4,dims2,"dset2",H5T_NATIVE_INT,NULL);
/*-------------------------------------------------------------------------
* current dimensions
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,4,dims2,"dset3",H5T_NATIVE_INT,NULL);
write_dataset(file1_id,4,dims21,"dset4",H5T_NATIVE_INT,NULL);
/*-------------------------------------------------------------------------
* Check for the same maximum dimensions. Give a warning if they are different
*-------------------------------------------------------------------------
*/
space_id = H5Screate_simple(4,dims2,dims2);
dataset_id = H5Dcreate(file1_id,"dset5",H5T_NATIVE_INT,space_id,H5P_DEFAULT);
status = H5Dclose(dataset_id);
status = H5Sclose(space_id);
space_id = H5Screate_simple(4,dims2,dims21);
plist_id = H5Pcreate(H5P_DATASET_CREATE);
status = H5Pset_chunk(plist_id,4,dims2);
dataset_id = H5Dcreate(file1_id,"dset6",H5T_NATIVE_INT,space_id,plist_id);
status = H5Dclose(dataset_id);
status = H5Sclose(space_id);
/*-------------------------------------------------------------------------
* Close
*-------------------------------------------------------------------------
*/
status = H5Fclose(file1_id);
return status;
}
/*-------------------------------------------------------------------------
* Datasets datatypes
*-------------------------------------------------------------------------
*/
static
int do_test_5(const char *file1, const char UNUSED *file2)
{
hid_t file1_id;
hsize_t dims[2]={3,2};
herr_t status;
char buf1a[3][2] = {{1,1},{1,1},{1,1}};
char buf1b[3][2] = {{1,1},{3,4},{5,6}};
short buf2a[3][2] = {{1,1},{1,1},{1,1}};
short buf2b[3][2] = {{1,1},{3,4},{5,6}};
int buf3a[3][2] = {{1,1},{1,1},{1,1}};
int buf3b[3][2] = {{1,1},{3,4},{5,6}};
long buf4a[3][2] = {{1,1},{1,1},{1,1}};
long buf4b[3][2] = {{1,1},{3,4},{5,6}};
float buf5a[3][2] = {{1,1},{1,1},{1,1}};
float buf5b[3][2] = {{1,1},{3,4},{5,6}};
double buf6a[3][2] = {{1,1},{1,1},{1,1}};
double buf6b[3][2] = {{1,1},{3,4},{5,6}};
/*unsigned/signed test
signed char -128 to 127
unsigned char 0 to 255
*/
char buf7a[3][2] = {{-1,-128},{-1,-1},{-1,-1}};
unsigned char buf7b[3][2] = {{1,128},{1,1},{1,1}};
/* long_long test */
long_long buf8a[3][2] = {{1,1},{1,1},{1,1}};
long_long buf8b[3][2] = {{1,1},{3,4},{5,6}};
unsigned long_long buf9a[3][2] = {{1,1},{1,1},{1,1}};
unsigned long_long buf9b[3][2] = {{1,1},{3,4},{5,6}};
/*-------------------------------------------------------------------------
* Create a file
*-------------------------------------------------------------------------
*/
file1_id = H5Fcreate (file1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* Check for different storage order. Give a warning if they are different
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset0a",H5T_STD_I16LE,buf2a);
write_dataset(file1_id,2,dims,"dset0b",H5T_STD_I32LE,buf3b);
/*-------------------------------------------------------------------------
* Check H5T_NATIVE_CHAR
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset1a",H5T_NATIVE_CHAR,buf1a);
write_dataset(file1_id,2,dims,"dset1b",H5T_NATIVE_CHAR,buf1b);
/*-------------------------------------------------------------------------
* Check H5T_NATIVE_SHORT
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset2a",H5T_NATIVE_SHORT,buf2a);
write_dataset(file1_id,2,dims,"dset2b",H5T_NATIVE_SHORT,buf2b);
/*-------------------------------------------------------------------------
* Check H5T_NATIVE_INT
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset3a",H5T_NATIVE_INT,buf3a);
write_dataset(file1_id,2,dims,"dset3b",H5T_NATIVE_INT,buf3b);
/*-------------------------------------------------------------------------
* Check H5T_NATIVE_LONG
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset4a",H5T_NATIVE_LONG,buf4a);
write_dataset(file1_id,2,dims,"dset4b",H5T_NATIVE_LONG,buf4b);
/*-------------------------------------------------------------------------
* Check H5T_NATIVE_FLOAT
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset5a",H5T_NATIVE_FLOAT,buf5a);
write_dataset(file1_id,2,dims,"dset5b",H5T_NATIVE_FLOAT,buf5b);
/*-------------------------------------------------------------------------
* Check H5T_NATIVE_DOUBLE
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset6a",H5T_NATIVE_DOUBLE,buf6a);
write_dataset(file1_id,2,dims,"dset6b",H5T_NATIVE_DOUBLE,buf6b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset7a",H5T_NATIVE_CHAR,buf7a);
write_dataset(file1_id,2,dims,"dset7b",H5T_NATIVE_UCHAR,buf7b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_LLONG
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset8a",H5T_NATIVE_LLONG,buf8a);
write_dataset(file1_id,2,dims,"dset8b",H5T_NATIVE_LLONG,buf8b);
/*-------------------------------------------------------------------------
* H5T_NATIVE_ULLONG
*-------------------------------------------------------------------------
*/
write_dataset(file1_id,2,dims,"dset9a",H5T_NATIVE_ULLONG,buf9a);
write_dataset(file1_id,2,dims,"dset9b",H5T_NATIVE_ULLONG,buf9b);
/*-------------------------------------------------------------------------
* Close
*-------------------------------------------------------------------------
*/
status = H5Fclose(file1_id);
return status;
}