2017-03-21 23:57:40 +08:00
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HDF5 version 1.10.2-snap0 currently under development
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2009-01-06 22:58:21 +08:00
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================================================================================
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INTRODUCTION
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2017-05-05 06:14:38 +08:00
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This document describes the differences between HDF5-1.10.1 and HDF5 1.10.2, and
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contains information on the platforms tested and known problems in HDF5-1.10.1.
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2009-01-06 22:58:21 +08:00
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For more details check the HISTORY*.txt files in the HDF5 source.
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2017-02-01 06:05:20 +08:00
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Links to HDF5 1.10.1 source code, documentation, and additional materials can be found on The HDF5 web page at:
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https://support.hdfgroup.org/HDF5/
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2017-03-21 02:32:26 +08:00
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2017-02-01 06:05:20 +08:00
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The HDF5 1.10.1 release can be obtained from:
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2017-05-05 06:14:38 +08:00
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https://support.hdfgroup.org/HDF5/release/obtain5.html
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2017-03-21 02:32:26 +08:00
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2016-03-08 00:01:53 +08:00
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User documentation for the snapshot can be accessed directly at this location:
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2009-01-06 22:58:21 +08:00
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2017-05-05 06:14:38 +08:00
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https://support.hdfgroup.org/HDF5/doc/
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2017-02-01 06:05:20 +08:00
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New features in the HDF5-1.10.x release series, including brief general
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2017-05-05 06:14:38 +08:00
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descriptions of some new and modified APIs, are described in the "New Features
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in HDF5 1.10" document:
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2017-02-01 06:05:20 +08:00
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2017-05-05 06:14:38 +08:00
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https://support.hdfgroup.org/HDF5/docNewFeatures/index.html
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2016-03-08 00:01:53 +08:00
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2017-02-01 06:05:20 +08:00
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All new and modified APIs are listed in detail in the "HDF5 Software Changes
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2017-05-05 06:14:38 +08:00
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from Release to Release" document, in the section "Release 1.10.1 (current
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release) versus Release 1.10.0
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2017-02-01 06:05:20 +08:00
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2017-05-05 06:14:38 +08:00
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https://support.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
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2009-01-06 22:58:21 +08:00
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If you have any questions or comments, please send them to the HDF Help Desk:
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help@hdfgroup.org
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CONTENTS
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- New Features
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- Support for new platforms and languages
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2017-05-05 23:50:27 +08:00
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- Bug Fixes since HDF5-1.10.1
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2012-11-15 02:10:03 +08:00
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- Supported Platforms
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- Tested Configuration Features Summary
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- More Tested Platforms
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2009-01-06 22:58:21 +08:00
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- Known Problems
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New Features
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============
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Configuration:
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-------------
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2017-06-01 05:45:41 +08:00
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- Removed version-specific gcc/gfortran flags for version 4.0 (inclusive)
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2017-07-06 02:35:03 +08:00
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and earlier.
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2017-06-01 05:45:41 +08:00
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The config/gnu-flags file, which is sourced as a part of the configure
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process, adds version-specific flags for use when building HDF5. Most of
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these flags control warnings and do not affect the final product.
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Flags for older versions of the compiler were consolidated into the
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common flags section. Moving these flags simplifies maintenance of
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the file.
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The upshot of this is that building with ancient versions of gcc
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(<= 4.0) will possibly no longer work without hand-hacking the file
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to remove the flags not understood by that version of the compiler.
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Nothing should change when building with gcc >= 4.1.
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(HDFFV-9937, DER, 2017/05/31)
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2017-07-06 02:35:03 +08:00
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- Corrected FORTRAN_HAVE_C_LONG_DOUBLE processing in the autotools.
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A bug in the autotools Fortran processing code always set the
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FORTRAN_HAVE_C_LONG_DOUBLE variable to be true regardless of
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whether or not a C long double type was present.
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This would cause compilation failures on platforms where a C
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long double type was not available and the Fortran wrappers
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were being built.
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(HDFFV-10247, DER, 2017/07/05)
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- The deprecated --enable-production and --enable-debug configure options
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failed to emit errors when passed an empty string
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(e.g.: --enable-debug="").
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Due to the way we checked for these options being set, it was possible
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to avoid the error message and continue configuration if an empty string
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was passed to the option.
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Any use of --enable-production or --enable-debug will now halt the
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configuration step and emit a helpful error message
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(use --enable-build-mode=debug|production instead).
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(HDFFV-10248, DER, 2017/07/05)
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- FC_BASENAME was set to 'gfortran40' instead 'gfortran' in the autotools
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processing on gcc (any platform) and freebsd.
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This was probably a historical artifact and so was changed to
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'gfortran'. We don't use FC_BASENAME in our processing, so this
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had no effect on building the library normally.
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(HDFFV-10249, DER, 2017/05/31)
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- -fno-omit-frame-pointer was added when building with debugging symbols
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enabled.
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Debugging symbols can be enabled independently of the overall build
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mode in both the autotools and CMake. This allows (limited) debugging
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of optimized code. Since many debuggers rely on the frame pointer,
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we've disabled this optimization when debugging symbols are requested
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(e.g.: via building with --enable-symbols).
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(HDFFV-10250, DER, 2017/05/31)
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2009-01-06 22:58:21 +08:00
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Library:
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--------
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2017-06-01 05:45:41 +08:00
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- H5FDdriver_query() API call added to the C library.
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This new library call allows the user to query a virtual file driver
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(VFD) for the feature flags it supports (listed in H5FDpublic.h).
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This can be useful to determine if a VFD supports SWMR, for example.
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Note that some VFDs have feature flags that may only be present
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after a file has been created or opened (e.g.: the core VFD will
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have the H5FD_FEAT_POSIX_COMPAT_HANDLE flag set if the backing
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store is switched on). Since the new API call queries a generic VFD
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unassociated with a file, these flags will never be returned.
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(HDFFV-10215, DER, 2017/05/31)
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- H5FD_FEAT_DEFAULT_VFD_COMPATIBLE VFD feature flag added to the C library.
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This new feature flag indicates that the VFD is compatible with the
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default VFD. VFDs that set this flag create single files that follow
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the canonical HDF5 file format.
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(HDFFV-10214, DER, 2017/05/31)
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2017-04-04 23:07:41 +08:00
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2009-01-06 22:58:21 +08:00
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Parallel Library:
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-----------------
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2017-03-21 02:32:26 +08:00
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-
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2009-01-06 22:58:21 +08:00
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Fortran Library:
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----------------
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2017-03-21 02:32:26 +08:00
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-
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2016-03-07 02:15:05 +08:00
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2009-01-06 22:58:21 +08:00
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C++ Library:
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------------
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2017-05-27 00:17:44 +08:00
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-
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2015-08-28 05:46:50 +08:00
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2016-03-07 02:15:05 +08:00
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Tools:
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------
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2017-05-27 00:17:44 +08:00
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-
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2016-03-08 00:01:53 +08:00
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2009-01-06 22:58:21 +08:00
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High-Level APIs:
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2016-03-09 21:56:58 +08:00
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---------------
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2017-05-27 00:17:44 +08:00
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-
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2016-03-09 21:56:58 +08:00
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2017-02-01 06:05:20 +08:00
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C Packet Table API
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------------------
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2017-05-27 00:17:44 +08:00
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-
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2016-03-07 02:15:05 +08:00
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2017-02-01 06:05:20 +08:00
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Internal header file
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--------------------
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-
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2017-03-21 02:32:26 +08:00
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2016-03-08 00:01:53 +08:00
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Documentation
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-------------
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2017-05-05 06:14:38 +08:00
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-
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2009-01-06 22:58:21 +08:00
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Support for new platforms, languages and compilers.
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=======================================
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2017-03-21 02:32:26 +08:00
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-
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2009-01-06 22:58:21 +08:00
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2017-02-01 06:05:20 +08:00
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Bug Fixes since HDF5-1.10.0-patch1 release
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2009-01-06 22:58:21 +08:00
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==================================
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Library
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-------
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2017-05-05 06:14:38 +08:00
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-
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2017-03-24 05:08:49 +08:00
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2009-01-06 22:58:21 +08:00
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Configuration
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-------------
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2017-05-27 00:17:44 +08:00
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-
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2009-01-06 22:58:21 +08:00
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Performance
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-------------
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2017-05-05 06:14:38 +08:00
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-
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2017-03-21 02:32:26 +08:00
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2012-06-24 07:31:40 +08:00
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Fortran
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--------
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2017-03-21 02:32:26 +08:00
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-
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2016-03-05 04:49:15 +08:00
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2016-03-07 02:15:05 +08:00
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Tools
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-----
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2017-05-27 02:07:47 +08:00
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- h5repack
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2017-05-27 00:17:44 +08:00
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2017-05-27 02:07:47 +08:00
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h5repack did not maintain the creation order flag of the root
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group.
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2017-05-27 00:17:44 +08:00
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2017-05-27 02:07:47 +08:00
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Improved h5repack by reading the creation order and applying the
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flag to the new root group. Also added arguments to set the
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order and index direction, which applys to the traversing of the
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original file, on the command line.
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2017-05-18 22:15:27 +08:00
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2017-05-27 02:07:47 +08:00
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(ADB - 2017/05/26, HDFFV-8611)
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- h5diff
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h5diff failed to account for strpad type and null terminators
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of char strings. Also, h5diff failed to account for string length
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differences and would give a different result depending on file
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order in the command line.
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Improved h5diff compare of strings and arrays by adding a check for
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string lengths and if the strpad was null filled.
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(ADB - 2017/05/18, HDFFV-9055, HDFFV-10128)
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2017-04-04 00:33:01 +08:00
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2009-04-09 05:22:13 +08:00
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High-Level APIs:
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2017-02-01 06:05:20 +08:00
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------
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2017-05-16 02:58:13 +08:00
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- Fixed a bug in the H5DOwrite_chunk() API call where overwriting a chunk
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with no filters caused an assert to trip (with assertions enabled /
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debug builds) or additional chunks to be inserted instead of overwriting
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the data (without assertions enabled / production builds).
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(HDFFV-10187, DER, 2017/05/11)
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2016-03-05 03:50:52 +08:00
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2016-03-07 02:15:05 +08:00
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Fortran High-Level APIs:
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2017-02-01 06:05:20 +08:00
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------
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2017-03-21 02:32:26 +08:00
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-
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2016-03-07 02:15:05 +08:00
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2016-03-08 00:01:53 +08:00
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Documentation
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-------------
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2017-05-05 06:14:38 +08:00
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-
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2009-01-06 22:58:21 +08:00
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F90 APIs
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--------
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2017-03-21 02:32:26 +08:00
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-
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2016-03-08 00:01:53 +08:00
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2009-01-06 22:58:21 +08:00
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C++ APIs
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--------
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2017-05-27 00:17:44 +08:00
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-
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2017-03-21 02:32:26 +08:00
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2013-02-14 00:03:49 +08:00
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Testing
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-------
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2017-03-21 02:32:26 +08:00
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-
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2009-01-06 22:58:21 +08:00
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2012-11-15 02:10:03 +08:00
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Supported Platforms
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===================
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2017-03-21 02:32:26 +08:00
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2017-02-01 07:10:07 +08:00
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Linux 2.6.32-573.18.1.el6.ppc64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4)
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2014-10-06 21:27:47 +08:00
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#1 SMP ppc64 GNU/Linux g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4)
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(ostrich) GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4)
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IBM XL C/C++ V13.1
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IBM XL Fortran V15.1
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2016-03-08 00:01:53 +08:00
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2017-02-01 06:05:20 +08:00
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Linux 3.10.0-327.10.1.el7 GNU C (gcc), Fortran (gfortran), C++ (g++)
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#1 SMP x86_64 GNU/Linux compilers:
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(kituo/moohan) Version 4.8.5 20150623 (Red Hat 4.8.5-4)
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Version 4.9.3, Version 5.2.0
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Intel(R) C (icc), C++ (icpc), Fortran (icc)
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compilers:
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Version 15.0.3.187 Build 20150407
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MPICH 3.1.4 compiled with GCC 4.9.3
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2017-03-21 02:32:26 +08:00
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2013-04-13 03:48:07 +08:00
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SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc
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(emu) Sun Fortran 95 8.6 SunOS_sparc
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Sun C++ 5.12 SunOS_sparc
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2012-11-15 02:10:03 +08:00
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2017-02-01 06:05:20 +08:00
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Windows 7 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
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2015-02-13 05:56:21 +08:00
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Visual Studio 2013 w/ Intel Fortran 15 (cmake)
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2017-02-01 06:05:20 +08:00
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Visual Studio 2015 w/ Intel Fortran 16 (cmake)
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Cygwin(CYGWIN_NT-6.1 2.2.1(0.289/5/3) gcc(4.9.3) compiler and gfortran)
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2012-11-15 02:10:03 +08:00
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(cmake and autotools)
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2010-06-02 04:34:26 +08:00
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2017-02-01 06:05:20 +08:00
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Windows 7 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
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2015-02-13 05:56:21 +08:00
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Visual Studio 2013 w/ Intel Fortran 15 (cmake)
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2017-02-01 06:05:20 +08:00
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Visual Studio 2015 w/ Intel Fortran 16 (cmake)
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2017-03-21 02:32:26 +08:00
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Visual Studio 2015 w/ Intel Parallel Studio 2017 (cmake)
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2017-02-01 06:05:20 +08:00
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Windows 10 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
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Windows 10 x64 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
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2017-03-21 02:32:26 +08:00
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2017-02-01 06:05:20 +08:00
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Mac OS X Mt. Lion 10.8.5 Apple clang/clang++ version 5.1 from Xcode 5.1
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64-bit gfortran GNU Fortran (GCC) 4.8.2
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(swallow/kite) Intel icc/icpc/ifort version 15.0.3
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Mac OS X Mavericks 10.9.5 Apple clang/clang++ version 6.0 from Xcode 6.2
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64-bit gfortran GNU Fortran (GCC) 4.9.2
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(wren/quail) Intel icc/icpc/ifort version 15.0.3
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Mac OS X Yosemite 10.10.5 Apple clang/clang++ version 6.1 from Xcode 7.0
|
|
|
|
64-bit gfortran GNU Fortran (GCC) 4.9.2
|
|
|
|
(osx1010dev/osx1010test) Intel icc/icpc/ifort version 15.0.3
|
2012-11-15 02:10:03 +08:00
|
|
|
|
2017-02-01 06:05:20 +08:00
|
|
|
Mac OS X El Capitan 10.11.6 Apple clang/clang++ version 7.3.0 from Xcode 7.3
|
|
|
|
64-bit gfortran GNU Fortran (GCC) 5.2.0
|
|
|
|
(osx1010dev/osx1010test) Intel icc/icpc/ifort version 16.0.2
|
2012-11-15 02:10:03 +08:00
|
|
|
|
|
|
|
|
|
|
|
Tested Configuration Features Summary
|
|
|
|
=====================================
|
2009-01-06 22:58:21 +08:00
|
|
|
|
|
|
|
In the tables below
|
2016-03-08 00:01:53 +08:00
|
|
|
y = tested
|
2012-11-15 02:10:03 +08:00
|
|
|
n = not tested in this release
|
|
|
|
C = Cluster
|
|
|
|
W = Workstation
|
2009-01-06 22:58:21 +08:00
|
|
|
x = not working in this release
|
2012-11-15 02:10:03 +08:00
|
|
|
dna = does not apply
|
2009-01-06 22:58:21 +08:00
|
|
|
( ) = footnote appears below second table
|
2016-03-08 00:01:53 +08:00
|
|
|
<blank> = testing incomplete on this feature or platform
|
2012-11-15 02:10:03 +08:00
|
|
|
|
|
|
|
Platform C F90/ F90 C++ zlib SZIP
|
|
|
|
parallel F2003 parallel
|
2013-04-13 03:48:07 +08:00
|
|
|
Solaris2.11 32-bit n y/y n y y y
|
|
|
|
Solaris2.11 64-bit n y/n n y y y
|
2013-07-10 04:44:24 +08:00
|
|
|
Windows 7 y y/y n y y y
|
2017-03-21 02:32:26 +08:00
|
|
|
Windows 7 x64 y y/y y y y y
|
2013-07-10 04:44:24 +08:00
|
|
|
Windows 7 Cygwin n y/n n y y y
|
|
|
|
Windows 7 x64 Cygwin n y/n n y y y
|
2017-02-01 06:05:20 +08:00
|
|
|
Windows 10 y y/y n y y y
|
|
|
|
Windows 10 x64 y y/y n y y y
|
|
|
|
Mac OS X Mountain Lion 10.8.5 64-bit n y/y n y y y
|
2017-03-23 05:45:06 +08:00
|
|
|
Mac OS X Mavericks 10.9.5 64-bit n y/y n y y y
|
|
|
|
Mac OS X Yosemite 10.10.5 64-bit n y/y n y y y
|
|
|
|
Mac OS X El Capitan 10.11.6 64-bit n y/y n y y y
|
|
|
|
CentOS 7.2 Linux 2.6.32 x86_64 PGI n y/y n y y y
|
2017-02-01 07:10:07 +08:00
|
|
|
CentOS 7.2 Linux 2.6.32 x86_64 GNU y y/y y y y y
|
|
|
|
CentOS 7.2 Linux 2.6.32 x86_64 Intel n y/y n y y y
|
2017-03-23 05:45:06 +08:00
|
|
|
Linux 2.6.32-573.18.1.el6.ppc64 n y/y n y y y
|
2012-11-15 02:10:03 +08:00
|
|
|
|
|
|
|
|
2016-03-08 00:01:53 +08:00
|
|
|
Platform Shared Shared Shared Thread-
|
|
|
|
C libs F90 libs C++ libs safe
|
|
|
|
Solaris2.11 32-bit y y y y
|
|
|
|
Solaris2.11 64-bit y y y y
|
2012-11-15 02:10:03 +08:00
|
|
|
Windows 7 y y y y
|
|
|
|
Windows 7 x64 y y y y
|
2013-07-10 04:44:24 +08:00
|
|
|
Windows 7 Cygwin n n n y
|
|
|
|
Windows 7 x64 Cygwin n n n y
|
2017-02-01 06:05:20 +08:00
|
|
|
Windows 10 y y y y
|
|
|
|
Windows 10 x64 y y y y
|
|
|
|
Mac OS X Mountain Lion 10.8.5 64-bit y n y y
|
|
|
|
Mac OS X Mavericks 10.9.5 64-bit y n y y
|
|
|
|
Mac OS X Yosemite 10.10.5 64-bit y n y y
|
|
|
|
Mac OS X El Capitan 10.11.6 64-bit y n y y
|
2017-03-23 05:45:06 +08:00
|
|
|
CentOS 7.2 Linux 2.6.32 x86_64 PGI y y y n
|
|
|
|
CentOS 7.2 Linux 2.6.32 x86_64 GNU y y y y
|
2017-02-01 07:10:07 +08:00
|
|
|
CentOS 7.2 Linux 2.6.32 x86_64 Intel y y y n
|
2017-02-01 06:05:20 +08:00
|
|
|
Linux 2.6.32-573.18.1.el6.ppc64 y y y n
|
2012-11-15 02:10:03 +08:00
|
|
|
|
|
|
|
Compiler versions for each platform are listed in the preceding
|
|
|
|
"Supported Platforms" table.
|
|
|
|
|
|
|
|
|
|
|
|
More Tested Platforms
|
|
|
|
=====================
|
|
|
|
The following platforms are not supported but have been tested for this release.
|
|
|
|
|
2017-03-23 05:45:06 +08:00
|
|
|
Linux 2.6.32-573.22.1.el6 GNU C (gcc), Fortran (gfortran), C++ (g++)
|
|
|
|
#1 SMP x86_64 GNU/Linux compilers:
|
|
|
|
(mayll/platypus) Version 4.4.7 20120313
|
|
|
|
Version 4.8.4
|
|
|
|
PGI C, Fortran, C++ for 64-bit target on
|
|
|
|
x86-64;
|
|
|
|
Version 16.10-0
|
|
|
|
Intel(R) C (icc), C++ (icpc), Fortran (icc)
|
|
|
|
compilers:
|
|
|
|
Version 15.0.3.187 (Build 20150407)
|
|
|
|
MPICH 3.1.4 compiled with GCC 4.9.3
|
|
|
|
|
2017-05-05 06:14:38 +08:00
|
|
|
Linux 3.10.0-327.18.2.el7 GNU C (gcc) and C++ (g++) compilers
|
|
|
|
#1 SMP x86_64 GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
|
|
|
|
(jelly) with NAG Fortran Compiler Release 6.1(Tozai)
|
|
|
|
Intel(R) C (icc) and C++ (icpc) compilers
|
|
|
|
Version 15.0.3.187 (Build 20150407)
|
|
|
|
with NAG Fortran Compiler Release 6.1(Tozai)
|
|
|
|
|
2017-02-04 03:24:12 +08:00
|
|
|
Linux 2.6.32-573.18.1.el6.ppc64 MPICH mpich 3.1.4 compiled with
|
|
|
|
#1 SMP ppc64 GNU/Linux IBM XL C/C++ for Linux, V13.1
|
|
|
|
(ostrich) and IBM XL Fortran for Linux, V15.1
|
2014-04-17 01:11:51 +08:00
|
|
|
|
2017-02-04 03:24:12 +08:00
|
|
|
Debian 8.4 3.16.0-4-amd64 #1 SMP Debian 3.16.36-1 x86_64 GNU/Linux
|
|
|
|
gcc, g++ (Debian 4.9.2-10) 4.9.2
|
|
|
|
GNU Fortran (Debian 4.9.2-10) 4.9.2
|
2012-11-15 02:10:03 +08:00
|
|
|
(cmake and autotools)
|
|
|
|
|
2017-02-04 03:24:12 +08:00
|
|
|
Fedora 24 4.7.2-201.fc24.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
|
2017-05-27 00:17:44 +08:00
|
|
|
gcc, g++ (GCC) 6.1.1 20160621
|
2017-05-05 06:14:38 +08:00
|
|
|
(Red Hat 6.1.1-3)
|
2017-05-27 00:17:44 +08:00
|
|
|
GNU Fortran (GCC) 6.1.1 20160621
|
2017-05-05 06:14:38 +08:00
|
|
|
(Red Hat 6.1.1-3)
|
2012-11-15 02:10:03 +08:00
|
|
|
(cmake and autotools)
|
|
|
|
|
2017-02-04 03:24:12 +08:00
|
|
|
Ubuntu 16.04.1 4.4.0-38-generic #57-Ubuntu SMP x86_64 GNU/Linux
|
2017-05-27 00:17:44 +08:00
|
|
|
gcc, g++ (Ubuntu 5.4.0-6ubuntu1~16.04.2)
|
2017-05-05 06:14:38 +08:00
|
|
|
5.4.0 20160609
|
2017-05-27 00:17:44 +08:00
|
|
|
GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.2)
|
2017-05-05 06:14:38 +08:00
|
|
|
5.4.0 20160609
|
2012-11-15 02:10:03 +08:00
|
|
|
(cmake and autotools)
|
2016-03-08 00:01:53 +08:00
|
|
|
|
2017-03-21 02:32:26 +08:00
|
|
|
|
2009-01-06 22:58:21 +08:00
|
|
|
Known Problems
|
|
|
|
==============
|
2007-04-14 02:53:50 +08:00
|
|
|
|
2017-05-05 06:14:38 +08:00
|
|
|
At present, metadata cache images may not be generated by parallel
|
|
|
|
applications. Parallel applications can read files with metadata cache
|
|
|
|
images, but since this is a collective operation, a deadlock is possible
|
|
|
|
if one or more processes do not participate.
|
|
|
|
|
|
|
|
Known problems in previous releases can be found in the HISTORY*.txt files
|
|
|
|
in the HDF5 source. Please report any new problems found to
|
|
|
|
help@hdfgroup.org.
|
|
|
|
|