2003-04-01 02:30:57 +08:00
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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2007-02-07 22:56:24 +08:00
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* Copyright by The HDF Group. *
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2003-04-01 02:30:57 +08:00
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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2007-02-07 22:56:24 +08:00
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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2003-04-01 02:30:57 +08:00
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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2001-11-21 03:16:38 +08:00
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/*
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* Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
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* Friday, November 16, 2001
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*
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* Purpose: This file contains declarations which are visible only within
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* the H5P package. Source files outside the H5P package should
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* include H5Pprivate.h instead.
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*/
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#ifndef H5P_PACKAGE
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#error "Do not include this file outside the H5P package!"
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#endif
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#ifndef _H5Ppkg_H
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#define _H5Ppkg_H
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2003-05-16 03:22:33 +08:00
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/* Get package's private header */
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2001-11-21 03:16:38 +08:00
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#include "H5Pprivate.h"
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2003-05-16 03:22:33 +08:00
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/* Other private headers needed by this file */
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2004-12-30 22:27:29 +08:00
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#include "H5SLprivate.h" /* Skip lists */
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[svn-r6252] Purpose:
Lots of performance improvements & a couple new internal API interfaces.
Description:
Performance Improvements:
- Cached file offset & length sizes in shared file struct, to avoid
constantly looking them up in the FCPL.
- Generic property improvements:
- Added "revision" number to generic property classes to speed
up comparisons.
- Changed method of storing properties from using a hash-table
to the TBBT routines in the library.
- Share the propery names between classes and the lists derived
from them.
- Removed redundant 'def_value' buffer from each property.
- Switching code to use a "copy on write" strategy for
properties in each list, where the properties in each list
are shared with the properties in the class, until a
property's value is changed in a list.
- Fixed error in layout code which was allocating too many buffers.
- Redefined public macros of the form (H5open()/H5check, <variable>)
internally to only be (<variable>), avoiding innumerable useless
calls to H5open() and H5check_version().
- Reuse already zeroed buffers in H5F_contig_fill instead of
constantly re-zeroing them.
- Don't write fill values if writing entire dataset.
- Use gettimeofday() system call instead of time() system when
checking the modification time of a dataset.
- Added reference counted string API and use it for tracking the
names of objects opening in a file (for the ID->name code).
- Removed redundant H5P_get() calls in B-tree routines.
- Redefine H5T datatype macros internally to the library, to avoid
calling H5check redundantly.
- Keep dataspace information for dataset locally instead of reading
from disk each time. Added new module to track open objects
in a file, to allow this (which will be useful eventually for
some FPH5 metadata caching issues).
- Remove H5AC_find macro which was inlining metadata cache lookups,
and call function instead.
- Remove redundant memset() calls from H5G_namei() routine.
- Remove redundant checking of object type when locating objects
in metadata cache and rely on the address only.
- Create default dataset object to use when default dataset creation
property list is used to create datasets, bypassing querying
for all the property list values.
- Use default I/O vector size when performing raw data with the
default dataset transfer property list, instead of querying for
I/O vector size.
- Remove H5P_DEFAULT internally to the library, replacing it with
more specific default property list based on the type of
property list needed.
- Remove redundant memset() calls in object header message (H5O*)
routines.
- Remove redunant memset() calls in data I/O routines.
- Split free-list allocation routines into malloc() and calloc()-
like routines, instead of one combined routine.
- Remove lots of indirection in H5O*() routines.
- Simplify metadata cache entry comparison routine (used when
flushing entire cache out).
- Only enable metadata cache statistics when H5AC_DEBUG is turned
on, instead of always tracking them.
- Simplify address comparison macro (H5F_addr_eq).
- Remove redundant metadata cache entry protections during dataset
creation by protecting the object header once and making all
the modifications necessary for the dataset creation before
unprotecting it.
- Reduce # of "number of element in extent" computations performed
by computing and storing the value during dataspace creation.
- Simplify checking for group location's file information, when file
has not been involving in file-mounting operations.
- Use binary encoding for modification time, instead of ASCII.
- Hoist H5HL_peek calls (to get information in a local heap)
out of loops in many group routine.
- Use static variable for iterators of selections, instead of
dynamically allocation them each time.
- Lookup & insert new entries in one step, avoiding traversing
group's B-tree twice.
- Fixed memory leak in H5Gget_objname_idx() routine (tangential to
performance improvements, but fixed along the way).
- Use free-list for reference counted strings.
- Don't bother copying object names into cached group entries,
since they are re-created when an object is opened.
The benchmark I used to measure these results created several thousand
small (2K) datasets in a file and wrote out the data for them. This is
Elena's "regular.c" benchmark.
These changes resulted in approximately ~4.3x speedup of the
development branch when compared to the previous code in the
development branch and ~1.4x speedup compared to the release
branch.
Additionally, these changes reduce the total memory used (code and
data) by the development branch by ~800KB, bringing the development
branch back into the same ballpark as the release branch.
I'll send out a more detailed description of the benchmark results
as a followup note.
New internal API routines:
Added "reference counted strings" API for tracking strings that get
used by multiple owners without duplicating the strings.
Added "ternary search tree" API for text->object mappings.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
Other platforms/configurations tested?
FreeBSD 4.7 (sleipnir) serial & parallel
Solaris 2.6 (baldric) serial
2003-01-10 01:20:03 +08:00
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2006-11-03 02:10:31 +08:00
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/**************************/
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/* Package Private Macros */
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/**************************/
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/****************************/
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/* Package Private Typedefs */
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/****************************/
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|
[svn-r6252] Purpose:
Lots of performance improvements & a couple new internal API interfaces.
Description:
Performance Improvements:
- Cached file offset & length sizes in shared file struct, to avoid
constantly looking them up in the FCPL.
- Generic property improvements:
- Added "revision" number to generic property classes to speed
up comparisons.
- Changed method of storing properties from using a hash-table
to the TBBT routines in the library.
- Share the propery names between classes and the lists derived
from them.
- Removed redundant 'def_value' buffer from each property.
- Switching code to use a "copy on write" strategy for
properties in each list, where the properties in each list
are shared with the properties in the class, until a
property's value is changed in a list.
- Fixed error in layout code which was allocating too many buffers.
- Redefined public macros of the form (H5open()/H5check, <variable>)
internally to only be (<variable>), avoiding innumerable useless
calls to H5open() and H5check_version().
- Reuse already zeroed buffers in H5F_contig_fill instead of
constantly re-zeroing them.
- Don't write fill values if writing entire dataset.
- Use gettimeofday() system call instead of time() system when
checking the modification time of a dataset.
- Added reference counted string API and use it for tracking the
names of objects opening in a file (for the ID->name code).
- Removed redundant H5P_get() calls in B-tree routines.
- Redefine H5T datatype macros internally to the library, to avoid
calling H5check redundantly.
- Keep dataspace information for dataset locally instead of reading
from disk each time. Added new module to track open objects
in a file, to allow this (which will be useful eventually for
some FPH5 metadata caching issues).
- Remove H5AC_find macro which was inlining metadata cache lookups,
and call function instead.
- Remove redundant memset() calls from H5G_namei() routine.
- Remove redundant checking of object type when locating objects
in metadata cache and rely on the address only.
- Create default dataset object to use when default dataset creation
property list is used to create datasets, bypassing querying
for all the property list values.
- Use default I/O vector size when performing raw data with the
default dataset transfer property list, instead of querying for
I/O vector size.
- Remove H5P_DEFAULT internally to the library, replacing it with
more specific default property list based on the type of
property list needed.
- Remove redundant memset() calls in object header message (H5O*)
routines.
- Remove redunant memset() calls in data I/O routines.
- Split free-list allocation routines into malloc() and calloc()-
like routines, instead of one combined routine.
- Remove lots of indirection in H5O*() routines.
- Simplify metadata cache entry comparison routine (used when
flushing entire cache out).
- Only enable metadata cache statistics when H5AC_DEBUG is turned
on, instead of always tracking them.
- Simplify address comparison macro (H5F_addr_eq).
- Remove redundant metadata cache entry protections during dataset
creation by protecting the object header once and making all
the modifications necessary for the dataset creation before
unprotecting it.
- Reduce # of "number of element in extent" computations performed
by computing and storing the value during dataspace creation.
- Simplify checking for group location's file information, when file
has not been involving in file-mounting operations.
- Use binary encoding for modification time, instead of ASCII.
- Hoist H5HL_peek calls (to get information in a local heap)
out of loops in many group routine.
- Use static variable for iterators of selections, instead of
dynamically allocation them each time.
- Lookup & insert new entries in one step, avoiding traversing
group's B-tree twice.
- Fixed memory leak in H5Gget_objname_idx() routine (tangential to
performance improvements, but fixed along the way).
- Use free-list for reference counted strings.
- Don't bother copying object names into cached group entries,
since they are re-created when an object is opened.
The benchmark I used to measure these results created several thousand
small (2K) datasets in a file and wrote out the data for them. This is
Elena's "regular.c" benchmark.
These changes resulted in approximately ~4.3x speedup of the
development branch when compared to the previous code in the
development branch and ~1.4x speedup compared to the release
branch.
Additionally, these changes reduce the total memory used (code and
data) by the development branch by ~800KB, bringing the development
branch back into the same ballpark as the release branch.
I'll send out a more detailed description of the benchmark results
as a followup note.
New internal API routines:
Added "reference counted strings" API for tracking strings that get
used by multiple owners without duplicating the strings.
Added "ternary search tree" API for text->object mappings.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
Other platforms/configurations tested?
FreeBSD 4.7 (sleipnir) serial & parallel
Solaris 2.6 (baldric) serial
2003-01-10 01:20:03 +08:00
|
|
|
/* Define enum for type of object that property is within */
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typedef enum {
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H5P_PROP_WITHIN_UNKNOWN=0, /* Property container is unknown */
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H5P_PROP_WITHIN_LIST, /* Property is within a list */
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H5P_PROP_WITHIN_CLASS /* Property is within a class */
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} H5P_prop_within_t;
|
2001-11-21 03:16:38 +08:00
|
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/* Define enum for modifications to class */
|
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typedef enum {
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H5P_MOD_ERR=(-1), /* Indicate an error */
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H5P_MOD_INC_CLS, /* Increment the dependant class count*/
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H5P_MOD_DEC_CLS, /* Decrement the dependant class count*/
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H5P_MOD_INC_LST, /* Increment the dependant list count*/
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H5P_MOD_DEC_LST, /* Decrement the dependant list count*/
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H5P_MOD_INC_REF, /* Increment the ID reference count*/
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H5P_MOD_DEC_REF, /* Decrement the ID reference count*/
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H5P_MOD_MAX /* Upper limit on class modifications */
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} H5P_class_mod_t;
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/* Define structure to hold property information */
|
2002-04-26 01:56:56 +08:00
|
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typedef struct H5P_genprop_t {
|
2001-11-21 03:16:38 +08:00
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/* Values for this property */
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char *name; /* Name of property */
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size_t size; /* Size of property value */
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void *value; /* Pointer to property value */
|
[svn-r6252] Purpose:
Lots of performance improvements & a couple new internal API interfaces.
Description:
Performance Improvements:
- Cached file offset & length sizes in shared file struct, to avoid
constantly looking them up in the FCPL.
- Generic property improvements:
- Added "revision" number to generic property classes to speed
up comparisons.
- Changed method of storing properties from using a hash-table
to the TBBT routines in the library.
- Share the propery names between classes and the lists derived
from them.
- Removed redundant 'def_value' buffer from each property.
- Switching code to use a "copy on write" strategy for
properties in each list, where the properties in each list
are shared with the properties in the class, until a
property's value is changed in a list.
- Fixed error in layout code which was allocating too many buffers.
- Redefined public macros of the form (H5open()/H5check, <variable>)
internally to only be (<variable>), avoiding innumerable useless
calls to H5open() and H5check_version().
- Reuse already zeroed buffers in H5F_contig_fill instead of
constantly re-zeroing them.
- Don't write fill values if writing entire dataset.
- Use gettimeofday() system call instead of time() system when
checking the modification time of a dataset.
- Added reference counted string API and use it for tracking the
names of objects opening in a file (for the ID->name code).
- Removed redundant H5P_get() calls in B-tree routines.
- Redefine H5T datatype macros internally to the library, to avoid
calling H5check redundantly.
- Keep dataspace information for dataset locally instead of reading
from disk each time. Added new module to track open objects
in a file, to allow this (which will be useful eventually for
some FPH5 metadata caching issues).
- Remove H5AC_find macro which was inlining metadata cache lookups,
and call function instead.
- Remove redundant memset() calls from H5G_namei() routine.
- Remove redundant checking of object type when locating objects
in metadata cache and rely on the address only.
- Create default dataset object to use when default dataset creation
property list is used to create datasets, bypassing querying
for all the property list values.
- Use default I/O vector size when performing raw data with the
default dataset transfer property list, instead of querying for
I/O vector size.
- Remove H5P_DEFAULT internally to the library, replacing it with
more specific default property list based on the type of
property list needed.
- Remove redundant memset() calls in object header message (H5O*)
routines.
- Remove redunant memset() calls in data I/O routines.
- Split free-list allocation routines into malloc() and calloc()-
like routines, instead of one combined routine.
- Remove lots of indirection in H5O*() routines.
- Simplify metadata cache entry comparison routine (used when
flushing entire cache out).
- Only enable metadata cache statistics when H5AC_DEBUG is turned
on, instead of always tracking them.
- Simplify address comparison macro (H5F_addr_eq).
- Remove redundant metadata cache entry protections during dataset
creation by protecting the object header once and making all
the modifications necessary for the dataset creation before
unprotecting it.
- Reduce # of "number of element in extent" computations performed
by computing and storing the value during dataspace creation.
- Simplify checking for group location's file information, when file
has not been involving in file-mounting operations.
- Use binary encoding for modification time, instead of ASCII.
- Hoist H5HL_peek calls (to get information in a local heap)
out of loops in many group routine.
- Use static variable for iterators of selections, instead of
dynamically allocation them each time.
- Lookup & insert new entries in one step, avoiding traversing
group's B-tree twice.
- Fixed memory leak in H5Gget_objname_idx() routine (tangential to
performance improvements, but fixed along the way).
- Use free-list for reference counted strings.
- Don't bother copying object names into cached group entries,
since they are re-created when an object is opened.
The benchmark I used to measure these results created several thousand
small (2K) datasets in a file and wrote out the data for them. This is
Elena's "regular.c" benchmark.
These changes resulted in approximately ~4.3x speedup of the
development branch when compared to the previous code in the
development branch and ~1.4x speedup compared to the release
branch.
Additionally, these changes reduce the total memory used (code and
data) by the development branch by ~800KB, bringing the development
branch back into the same ballpark as the release branch.
I'll send out a more detailed description of the benchmark results
as a followup note.
New internal API routines:
Added "reference counted strings" API for tracking strings that get
used by multiple owners without duplicating the strings.
Added "ternary search tree" API for text->object mappings.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
Other platforms/configurations tested?
FreeBSD 4.7 (sleipnir) serial & parallel
Solaris 2.6 (baldric) serial
2003-01-10 01:20:03 +08:00
|
|
|
H5P_prop_within_t type; /* Type of object the property is within */
|
[svn-r18346] Description:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-02-28 04:08:03 +08:00
|
|
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hbool_t shared_name; /* Whether the name is shared or not */
|
2001-11-21 03:16:38 +08:00
|
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/* Callback function pointers & info */
|
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H5P_prp_create_func_t create; /* Function to call when a property is created */
|
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H5P_prp_set_func_t set; /* Function to call when a property value is set */
|
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|
H5P_prp_get_func_t get; /* Function to call when a property value is retrieved */
|
[svn-r22807] Description:
Add encode/decode API routines for property lists: H5Pencode/H5Pdecode.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN,
in production mode
Mac OS X/32 10.7.3 (amazon) in debug mode
Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
2012-09-25 23:47:25 +08:00
|
|
|
H5P_prp_encode_func_t encode; /* Function to call when a property is encoded */
|
|
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|
H5P_prp_decode_func_t decode; /* Function to call when a property is decoded */
|
2001-11-21 03:16:38 +08:00
|
|
|
H5P_prp_delete_func_t del; /* Function to call when a property is deleted */
|
|
|
|
H5P_prp_copy_func_t copy; /* Function to call when a property is copied */
|
2004-01-08 22:55:11 +08:00
|
|
|
H5P_prp_compare_func_t cmp; /* Function to call when a property is compared */
|
2001-11-21 03:16:38 +08:00
|
|
|
H5P_prp_close_func_t close; /* Function to call when a property is closed */
|
|
|
|
} H5P_genprop_t;
|
|
|
|
|
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|
|
/* Define structure to hold class information */
|
2002-04-26 01:56:56 +08:00
|
|
|
struct H5P_genclass_t {
|
|
|
|
struct H5P_genclass_t *parent; /* Pointer to parent class */
|
2012-08-04 07:44:17 +08:00
|
|
|
char *name; /* Name of property list class */
|
|
|
|
H5P_plist_type_t type; /* Type of property */
|
|
|
|
size_t nprops; /* Number of properties in class */
|
2001-11-21 03:16:38 +08:00
|
|
|
unsigned plists; /* Number of property lists that have been created since the last modification to the class */
|
|
|
|
unsigned classes; /* Number of classes that have been derived since the last modification to the class */
|
|
|
|
unsigned ref_count; /* Number of oustanding ID's open on this class object */
|
[svn-r18346] Description:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-02-28 04:08:03 +08:00
|
|
|
hbool_t deleted; /* Whether this class has been deleted and is waiting for dependent classes & proplists to close */
|
[svn-r6252] Purpose:
Lots of performance improvements & a couple new internal API interfaces.
Description:
Performance Improvements:
- Cached file offset & length sizes in shared file struct, to avoid
constantly looking them up in the FCPL.
- Generic property improvements:
- Added "revision" number to generic property classes to speed
up comparisons.
- Changed method of storing properties from using a hash-table
to the TBBT routines in the library.
- Share the propery names between classes and the lists derived
from them.
- Removed redundant 'def_value' buffer from each property.
- Switching code to use a "copy on write" strategy for
properties in each list, where the properties in each list
are shared with the properties in the class, until a
property's value is changed in a list.
- Fixed error in layout code which was allocating too many buffers.
- Redefined public macros of the form (H5open()/H5check, <variable>)
internally to only be (<variable>), avoiding innumerable useless
calls to H5open() and H5check_version().
- Reuse already zeroed buffers in H5F_contig_fill instead of
constantly re-zeroing them.
- Don't write fill values if writing entire dataset.
- Use gettimeofday() system call instead of time() system when
checking the modification time of a dataset.
- Added reference counted string API and use it for tracking the
names of objects opening in a file (for the ID->name code).
- Removed redundant H5P_get() calls in B-tree routines.
- Redefine H5T datatype macros internally to the library, to avoid
calling H5check redundantly.
- Keep dataspace information for dataset locally instead of reading
from disk each time. Added new module to track open objects
in a file, to allow this (which will be useful eventually for
some FPH5 metadata caching issues).
- Remove H5AC_find macro which was inlining metadata cache lookups,
and call function instead.
- Remove redundant memset() calls from H5G_namei() routine.
- Remove redundant checking of object type when locating objects
in metadata cache and rely on the address only.
- Create default dataset object to use when default dataset creation
property list is used to create datasets, bypassing querying
for all the property list values.
- Use default I/O vector size when performing raw data with the
default dataset transfer property list, instead of querying for
I/O vector size.
- Remove H5P_DEFAULT internally to the library, replacing it with
more specific default property list based on the type of
property list needed.
- Remove redundant memset() calls in object header message (H5O*)
routines.
- Remove redunant memset() calls in data I/O routines.
- Split free-list allocation routines into malloc() and calloc()-
like routines, instead of one combined routine.
- Remove lots of indirection in H5O*() routines.
- Simplify metadata cache entry comparison routine (used when
flushing entire cache out).
- Only enable metadata cache statistics when H5AC_DEBUG is turned
on, instead of always tracking them.
- Simplify address comparison macro (H5F_addr_eq).
- Remove redundant metadata cache entry protections during dataset
creation by protecting the object header once and making all
the modifications necessary for the dataset creation before
unprotecting it.
- Reduce # of "number of element in extent" computations performed
by computing and storing the value during dataspace creation.
- Simplify checking for group location's file information, when file
has not been involving in file-mounting operations.
- Use binary encoding for modification time, instead of ASCII.
- Hoist H5HL_peek calls (to get information in a local heap)
out of loops in many group routine.
- Use static variable for iterators of selections, instead of
dynamically allocation them each time.
- Lookup & insert new entries in one step, avoiding traversing
group's B-tree twice.
- Fixed memory leak in H5Gget_objname_idx() routine (tangential to
performance improvements, but fixed along the way).
- Use free-list for reference counted strings.
- Don't bother copying object names into cached group entries,
since they are re-created when an object is opened.
The benchmark I used to measure these results created several thousand
small (2K) datasets in a file and wrote out the data for them. This is
Elena's "regular.c" benchmark.
These changes resulted in approximately ~4.3x speedup of the
development branch when compared to the previous code in the
development branch and ~1.4x speedup compared to the release
branch.
Additionally, these changes reduce the total memory used (code and
data) by the development branch by ~800KB, bringing the development
branch back into the same ballpark as the release branch.
I'll send out a more detailed description of the benchmark results
as a followup note.
New internal API routines:
Added "reference counted strings" API for tracking strings that get
used by multiple owners without duplicating the strings.
Added "ternary search tree" API for text->object mappings.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
Other platforms/configurations tested?
FreeBSD 4.7 (sleipnir) serial & parallel
Solaris 2.6 (baldric) serial
2003-01-10 01:20:03 +08:00
|
|
|
unsigned revision; /* Revision number of a particular class (global) */
|
2012-08-04 07:44:17 +08:00
|
|
|
H5SL_t *props; /* Skip list containing properties */
|
2001-11-21 03:16:38 +08:00
|
|
|
|
|
|
|
/* Callback function pointers & info */
|
|
|
|
H5P_cls_create_func_t create_func; /* Function to call when a property list is created */
|
2012-08-04 07:44:17 +08:00
|
|
|
void *create_data; /* Pointer to user data to pass along to create callback */
|
|
|
|
H5P_cls_copy_func_t copy_func; /* Function to call when a property list is copied */
|
|
|
|
void *copy_data; /* Pointer to user data to pass along to copy callback */
|
|
|
|
H5P_cls_close_func_t close_func; /* Function to call when a property list is closed */
|
|
|
|
void *close_data; /* Pointer to user data to pass along to close callback */
|
2001-11-21 03:16:38 +08:00
|
|
|
};
|
|
|
|
|
|
|
|
/* Define structure to hold property list information */
|
2002-04-26 01:56:56 +08:00
|
|
|
struct H5P_genplist_t {
|
2001-11-21 03:16:38 +08:00
|
|
|
H5P_genclass_t *pclass; /* Pointer to class info */
|
[svn-r18346] Description:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-02-28 04:08:03 +08:00
|
|
|
hid_t plist_id; /* Copy of the property list ID (for use in close callback) */
|
|
|
|
size_t nprops; /* Number of properties in class */
|
|
|
|
hbool_t class_init; /* Whether the class initialization callback finished successfully */
|
2004-12-30 22:27:29 +08:00
|
|
|
H5SL_t *del; /* Skip list containing names of deleted properties */
|
|
|
|
H5SL_t *props; /* Skip list containing properties */
|
2001-11-21 03:16:38 +08:00
|
|
|
};
|
|
|
|
|
2006-11-02 12:54:19 +08:00
|
|
|
/* Function pointer for library classes with properties to register */
|
|
|
|
typedef herr_t (*H5P_init_class_op_t)(H5P_genclass_t *pclass);
|
|
|
|
typedef herr_t (*H5P_reg_prop_func_t)(H5P_genclass_t *pclass);
|
|
|
|
|
|
|
|
/*
|
|
|
|
* Each library property list class has a variable of this type that contains
|
|
|
|
* class variables and methods used to initialize the class.
|
|
|
|
*/
|
|
|
|
typedef struct H5P_libclass_t {
|
|
|
|
const char *name; /* Class name */
|
2012-08-04 07:44:17 +08:00
|
|
|
H5P_plist_type_t type; /* Class type */
|
2006-11-02 12:54:19 +08:00
|
|
|
|
2014-04-24 00:30:25 +08:00
|
|
|
H5P_genclass_t * * par_pclass; /* Pointer to global parent class property list class */
|
|
|
|
H5P_genclass_t * * pclass; /* Pointer to global property list class */
|
2006-11-02 12:54:19 +08:00
|
|
|
hid_t * const class_id; /* Pointer to global property list class ID */
|
|
|
|
hid_t * const def_plist_id; /* Pointer to global default property list ID */
|
|
|
|
H5P_reg_prop_func_t reg_prop_func; /* Register class's properties */
|
|
|
|
|
|
|
|
/* Class callback function pointers & info */
|
|
|
|
H5P_cls_create_func_t create_func; /* Function to call when a property list is created */
|
|
|
|
void *create_data; /* Pointer to user data to pass along to create callback */
|
|
|
|
H5P_cls_copy_func_t copy_func; /* Function to call when a property list is copied */
|
|
|
|
void *copy_data; /* Pointer to user data to pass along to copy callback */
|
|
|
|
H5P_cls_close_func_t close_func; /* Function to call when a property list is closed */
|
|
|
|
void *close_data; /* Pointer to user data to pass along to close callback */
|
|
|
|
} H5P_libclass_t;
|
|
|
|
|
2012-07-27 03:33:59 +08:00
|
|
|
/* Property list/class iterator callback function pointer */
|
|
|
|
typedef int (*H5P_iterate_int_t)(H5P_genprop_t *prop, void *udata);
|
2006-11-02 12:54:19 +08:00
|
|
|
|
2014-04-24 00:30:25 +08:00
|
|
|
/* Forward declarations (for prototypes & struct definitions) */
|
|
|
|
struct H5Z_filter_info_t;
|
|
|
|
|
2006-11-03 02:10:31 +08:00
|
|
|
/*****************************/
|
|
|
|
/* Package Private Variables */
|
|
|
|
/*****************************/
|
|
|
|
|
|
|
|
|
|
|
|
/******************************/
|
|
|
|
/* Package Private Prototypes */
|
|
|
|
/******************************/
|
2006-11-02 12:54:19 +08:00
|
|
|
|
2001-11-21 03:16:38 +08:00
|
|
|
/* Private functions, not part of the publicly documented API */
|
2014-04-09 13:08:21 +08:00
|
|
|
H5_DLL herr_t H5P__term_pub_interface(void);
|
|
|
|
H5_DLL herr_t H5P__term_deprec_interface(void);
|
2006-11-02 12:54:19 +08:00
|
|
|
H5_DLL H5P_genclass_t *H5P_create_class(H5P_genclass_t *par_class,
|
2012-08-04 07:44:17 +08:00
|
|
|
const char *name, H5P_plist_type_t type,
|
2006-11-02 12:54:19 +08:00
|
|
|
H5P_cls_create_func_t cls_create, void *create_data,
|
|
|
|
H5P_cls_copy_func_t cls_copy, void *copy_data,
|
|
|
|
H5P_cls_close_func_t cls_close, void *close_data);
|
[svn-r14202] Description:
Move H5Pregister our of old "compat v1.6" section and add it to the
versioned symbols.
Add simple regression test for H5Pregister1()
Split H5P.c source file into H5P/H5Pint/H5Pdeprec files.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-12 05:09:42 +08:00
|
|
|
H5_DLL H5P_genclass_t *H5P_copy_pclass(H5P_genclass_t *pclass);
|
[svn-r18346] Description:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-02-28 04:08:03 +08:00
|
|
|
H5_DLL herr_t H5P_register_real(H5P_genclass_t *pclass, const char *name, size_t size,
|
[svn-r22807] Description:
Add encode/decode API routines for property lists: H5Pencode/H5Pdecode.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN,
in production mode
Mac OS X/32 10.7.3 (amazon) in debug mode
Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
2012-09-25 23:47:25 +08:00
|
|
|
const void *def_value, H5P_prp_create_func_t prp_create,
|
|
|
|
H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
|
|
|
|
H5P_prp_encode_func_t prp_encode, H5P_prp_decode_func_t prp_decode,
|
|
|
|
H5P_prp_delete_func_t prp_delete,
|
[svn-r18346] Description:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-02-28 04:08:03 +08:00
|
|
|
H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp,
|
|
|
|
H5P_prp_close_func_t prp_close);
|
|
|
|
H5_DLL herr_t H5P_register(H5P_genclass_t **pclass, const char *name, size_t size,
|
[svn-r22807] Description:
Add encode/decode API routines for property lists: H5Pencode/H5Pdecode.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN,
in production mode
Mac OS X/32 10.7.3 (amazon) in debug mode
Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
2012-09-25 23:47:25 +08:00
|
|
|
const void *def_value, H5P_prp_create_func_t prp_create,
|
|
|
|
H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
|
|
|
|
H5P_prp_encode_func_t prp_encode, H5P_prp_decode_func_t prp_decode,
|
|
|
|
H5P_prp_delete_func_t prp_delete,
|
[svn-r18346] Description:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-02-28 04:08:03 +08:00
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|
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H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp,
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H5P_prp_close_func_t prp_close);
|
2004-12-30 22:27:29 +08:00
|
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H5_DLL herr_t H5P_add_prop(H5SL_t *props, H5P_genprop_t *prop);
|
2002-10-24 03:28:05 +08:00
|
|
|
H5_DLL herr_t H5P_access_class(H5P_genclass_t *pclass, H5P_class_mod_t mod);
|
[svn-r14202] Description:
Move H5Pregister our of old "compat v1.6" section and add it to the
versioned symbols.
Add simple regression test for H5Pregister1()
Split H5P.c source file into H5P/H5Pint/H5Pdeprec files.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-12 05:09:42 +08:00
|
|
|
H5_DLL htri_t H5P_exist_pclass(H5P_genclass_t *pclass, const char *name);
|
2012-09-14 01:08:01 +08:00
|
|
|
H5_DLL herr_t H5P_get_size_plist(const H5P_genplist_t *plist, const char *name,
|
[svn-r14202] Description:
Move H5Pregister our of old "compat v1.6" section and add it to the
versioned symbols.
Add simple regression test for H5Pregister1()
Split H5P.c source file into H5P/H5Pint/H5Pdeprec files.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-12 05:09:42 +08:00
|
|
|
size_t *size);
|
|
|
|
H5_DLL herr_t H5P_get_size_pclass(H5P_genclass_t *pclass, const char *name,
|
|
|
|
size_t *size);
|
|
|
|
H5_DLL herr_t H5P_get_nprops_plist(const H5P_genplist_t *plist, size_t *nprops);
|
|
|
|
H5_DLL int H5P_cmp_class(const H5P_genclass_t *pclass1, const H5P_genclass_t *pclass2);
|
2012-09-14 01:08:01 +08:00
|
|
|
H5_DLL herr_t H5P_cmp_plist(const H5P_genplist_t *plist1, const H5P_genplist_t *plist2,
|
|
|
|
int *cmp_ret);
|
2012-08-04 07:44:17 +08:00
|
|
|
H5_DLL int H5P_iterate_plist(const H5P_genplist_t *plist, hbool_t iter_all_prop,
|
|
|
|
int *idx, H5P_iterate_int_t iter_func, void *iter_data);
|
|
|
|
H5_DLL int H5P_iterate_pclass(const H5P_genclass_t *pclass, int *idx,
|
|
|
|
H5P_iterate_int_t iter_func, void *iter_data);
|
[svn-r14202] Description:
Move H5Pregister our of old "compat v1.6" section and add it to the
versioned symbols.
Add simple regression test for H5Pregister1()
Split H5P.c source file into H5P/H5Pint/H5Pdeprec files.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-12 05:09:42 +08:00
|
|
|
H5_DLL herr_t H5P_copy_prop_plist(hid_t dst_id, hid_t src_id, const char *name);
|
[svn-r18346] Description:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-02-28 04:08:03 +08:00
|
|
|
H5_DLL herr_t H5P_copy_prop_pclass(hid_t dst_id, hid_t src_id, const char *name);
|
[svn-r14202] Description:
Move H5Pregister our of old "compat v1.6" section and add it to the
versioned symbols.
Add simple regression test for H5Pregister1()
Split H5P.c source file into H5P/H5Pint/H5Pdeprec files.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-12 05:09:42 +08:00
|
|
|
H5_DLL herr_t H5P_unregister(H5P_genclass_t *pclass, const char *name);
|
2003-05-16 03:22:33 +08:00
|
|
|
H5_DLL char *H5P_get_class_path(H5P_genclass_t *pclass);
|
|
|
|
H5_DLL H5P_genclass_t *H5P_open_class_path(const char *path);
|
[svn-r14202] Description:
Move H5Pregister our of old "compat v1.6" section and add it to the
versioned symbols.
Add simple regression test for H5Pregister1()
Split H5P.c source file into H5P/H5Pint/H5Pdeprec files.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-12 05:09:42 +08:00
|
|
|
H5_DLL H5P_genclass_t *H5P_get_class_parent(const H5P_genclass_t *pclass);
|
2003-06-04 23:28:04 +08:00
|
|
|
H5_DLL herr_t H5P_close_class(void *_pclass);
|
2012-09-14 01:08:01 +08:00
|
|
|
H5_DLL H5P_genprop_t *H5P__find_prop_plist(const H5P_genplist_t *plist, const char *name);
|
[svn-r22807] Description:
Add encode/decode API routines for property lists: H5Pencode/H5Pdecode.
Tested on:
FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN,
in production mode
Mac OS X/32 10.7.3 (amazon) in debug mode
Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
2012-09-25 23:47:25 +08:00
|
|
|
H5_DLL hid_t H5P__new_plist_of_type(H5P_plist_type_t type);
|
|
|
|
|
|
|
|
/* Encode/decode routines */
|
|
|
|
H5_DLL herr_t H5P__encode(const H5P_genplist_t *plist, hbool_t enc_all_prop,
|
|
|
|
void *buf, size_t *nalloc);
|
|
|
|
H5_DLL hid_t H5P__decode(const void *buf);
|
2012-10-05 10:25:37 +08:00
|
|
|
H5_DLL herr_t H5P__encode_hsize_t(const void *value, void **_pp, size_t *size);
|
|
|
|
H5_DLL herr_t H5P__encode_size_t(const void *value, void **_pp, size_t *size);
|
|
|
|
H5_DLL herr_t H5P__encode_unsigned(const void *value, void **_pp, size_t *size);
|
|
|
|
H5_DLL herr_t H5P__encode_uint8_t(const void *value, void **_pp, size_t *size);
|
|
|
|
H5_DLL herr_t H5P__encode_hbool_t(const void *value, void **_pp, size_t *size);
|
|
|
|
H5_DLL herr_t H5P__encode_double(const void *value, void **_pp, size_t *size);
|
|
|
|
H5_DLL herr_t H5P__decode_hsize_t(const void **_pp, void *value);
|
|
|
|
H5_DLL herr_t H5P__decode_size_t(const void **_pp, void *value);
|
|
|
|
H5_DLL herr_t H5P__decode_unsigned(const void **_pp, void *value);
|
|
|
|
H5_DLL herr_t H5P__decode_uint8_t(const void **_pp, void *value);
|
|
|
|
H5_DLL herr_t H5P__decode_hbool_t(const void **_pp, void *value);
|
|
|
|
H5_DLL herr_t H5P__decode_double(const void **_pp, void *value);
|
2001-11-21 03:16:38 +08:00
|
|
|
|
2014-04-24 00:30:25 +08:00
|
|
|
/* Private OCPL routines */
|
|
|
|
H5_DLL herr_t H5P_get_filter(const struct H5Z_filter_info_t *filter,
|
|
|
|
unsigned int *flags, size_t *cd_nelmts, unsigned cd_values[],
|
|
|
|
size_t namelen, char name[], unsigned *filter_config);
|
|
|
|
|
2003-05-16 03:22:33 +08:00
|
|
|
/* Testing functions */
|
|
|
|
#ifdef H5P_TESTING
|
|
|
|
H5_DLL char *H5P_get_class_path_test(hid_t pclass_id);
|
|
|
|
H5_DLL hid_t H5P_open_class_path_test(const char *path);
|
2007-05-03 06:16:32 +08:00
|
|
|
H5_DLL herr_t H5P_reset_external_file_test(hid_t dcpl_id);
|
2003-05-16 03:22:33 +08:00
|
|
|
#endif /* H5P_TESTING */
|
|
|
|
|
2001-11-21 03:16:38 +08:00
|
|
|
#endif /* _H5Ppkg_H */
|
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