2003-02-24 15:13:07 -05:00
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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2007-02-07 09:56:24 -05:00
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* Copyright by The HDF Group. *
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2003-02-24 15:13:07 -05:00
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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2007-02-07 09:56:24 -05:00
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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2003-02-24 15:13:07 -05:00
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/* Programmer: Quincey Koziol <koziol@ncsa.uiuc.ued>
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1998-07-06 16:01:13 -05:00
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* Friday, May 29, 1998
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*
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2003-02-24 15:13:07 -05:00
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* Purpose: Dataspace selection functions.
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1998-07-06 16:01:13 -05:00
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*/
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2000-10-10 02:43:38 -05:00
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#define H5S_PACKAGE /*suppress error about including H5Spkg */
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2003-06-27 10:59:48 -05:00
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2004-09-29 22:46:58 -05:00
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#include "H5private.h" /* Generic Functions */
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2006-01-28 13:31:22 -05:00
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#include "H5Dprivate.h" /* Datasets */
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2004-09-29 22:46:58 -05:00
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#include "H5Eprivate.h" /* Error handling */
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#include "H5FLprivate.h" /* Free Lists */
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#include "H5Iprivate.h" /* IDs */
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[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
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#include "H5MMprivate.h" /* Memory management */
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2004-09-29 22:46:58 -05:00
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#include "H5Spkg.h" /* Dataspaces */
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2014-02-13 17:12:46 -05:00
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#include "H5VMprivate.h" /* Vector and array functions */
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2007-06-28 22:12:45 -05:00
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#include "H5WBprivate.h" /* Wrapped Buffers */
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1998-07-06 16:01:13 -05:00
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2003-06-04 10:22:23 -05:00
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/* Local functions */
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2004-06-23 10:36:35 -05:00
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#ifdef LATER
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2014-03-07 14:12:20 -05:00
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static herr_t H5S_select_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end);
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static htri_t H5S_select_iter_has_next_block(const H5S_sel_iter_t *iter);
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2003-06-04 10:22:23 -05:00
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static herr_t H5S_select_iter_next_block(H5S_sel_iter_t *iter);
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2004-06-23 10:36:35 -05:00
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#endif /* LATER */
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2003-06-04 10:22:23 -05:00
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[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
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2003-05-31 11:26:19 -05:00
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/*--------------------------------------------------------------------------
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NAME
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H5S_select_offset
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PURPOSE
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Set the selection offset for a datapace
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USAGE
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herr_t H5S_select_offset(space, offset)
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H5S_t *space; IN/OUT: Dataspace object to set selection offset
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const hssize_t *offset; IN: Offset to position the selection at
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RETURNS
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Non-negative on success/Negative on failure
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DESCRIPTION
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Sets the selection offset for the dataspace
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GLOBAL VARIABLES
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COMMENTS, BUGS, ASSUMPTIONS
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Only works for simple dataspaces currently
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EXAMPLES
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REVISION LOG
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--------------------------------------------------------------------------*/
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herr_t
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H5S_select_offset(H5S_t *space, const hssize_t *offset)
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{
|
2012-02-08 22:13:27 -05:00
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FUNC_ENTER_NOAPI_NOINIT_NOERR
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2003-05-31 11:26:19 -05:00
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/* Check args */
|
[svn-r14326] Description:
- Keep skip list for tracking chunks with dataset (instead of creating/
destroying it for each I/O operation) and just delete the skip list
nodes.
- Avoid computations for normalizing selection offset when offset not set.
- Avoid updating object modification time twice during dataset creation.
- Avoid updating dataset layout message (and object modification time)
until dataset is closed.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-06 14:24:30 -05:00
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HDassert(space);
|
2012-08-08 18:01:20 -05:00
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HDassert(0 < space->extent.rank && space->extent.rank <= H5S_MAX_RANK);
|
[svn-r14326] Description:
- Keep skip list for tracking chunks with dataset (instead of creating/
destroying it for each I/O operation) and just delete the skip list
nodes.
- Avoid computations for normalizing selection offset when offset not set.
- Avoid updating object modification time twice during dataset creation.
- Avoid updating dataset layout message (and object modification time)
until dataset is closed.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-06 14:24:30 -05:00
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HDassert(offset);
|
2003-05-31 11:26:19 -05:00
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/* Copy the offset over */
|
[svn-r14326] Description:
- Keep skip list for tracking chunks with dataset (instead of creating/
destroying it for each I/O operation) and just delete the skip list
nodes.
- Avoid computations for normalizing selection offset when offset not set.
- Avoid updating object modification time twice during dataset creation.
- Avoid updating dataset layout message (and object modification time)
until dataset is closed.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-06 14:24:30 -05:00
|
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HDmemcpy(space->select.offset, offset, sizeof(hssize_t)*space->extent.rank);
|
2003-05-31 11:26:19 -05:00
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|
|
[svn-r14326] Description:
- Keep skip list for tracking chunks with dataset (instead of creating/
destroying it for each I/O operation) and just delete the skip list
nodes.
- Avoid computations for normalizing selection offset when offset not set.
- Avoid updating object modification time twice during dataset creation.
- Avoid updating dataset layout message (and object modification time)
until dataset is closed.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-06 14:24:30 -05:00
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/* Indicate that the offset was changed */
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space->select.offset_changed = TRUE;
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FUNC_LEAVE_NOAPI(SUCCEED)
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2003-05-31 11:26:19 -05:00
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} /* H5S_select_offset() */
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1998-07-06 16:01:13 -05:00
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/*--------------------------------------------------------------------------
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NAME
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H5S_select_copy
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PURPOSE
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Copy a selection from one dataspace to another
|
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USAGE
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herr_t H5S_select_copy(dst, src)
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H5S_t *dst; OUT: Pointer to the destination dataspace
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H5S_t *src; IN: Pointer to the source dataspace
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RETURNS
|
1998-10-26 16:18:54 -05:00
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Non-negative on success/Negative on failure
|
1998-07-06 16:01:13 -05:00
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DESCRIPTION
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Copies all the selection information (include offset) from the source
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dataspace to the destination dataspace.
|
2004-05-08 14:09:50 -05:00
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If the SHARE_SELECTION flag is set, then the selection can be shared
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between the source and destination dataspaces. (This should only occur in
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situations where the destination dataspace will immediately change to a new
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selection)
|
1998-07-06 16:01:13 -05:00
|
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|
GLOBAL VARIABLES
|
|
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COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
1998-07-08 10:05:01 -05:00
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herr_t
|
2014-11-03 15:13:25 -05:00
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H5S_select_copy (H5S_t *dst, const H5S_t *src, hbool_t share_selection)
|
1998-07-06 16:01:13 -05:00
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{
|
2004-06-13 14:08:17 -05:00
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herr_t ret_value; /* return value */
|
1998-07-22 17:11:22 -05:00
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|
2012-02-08 22:13:27 -05:00
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FUNC_ENTER_NOAPI(FAIL)
|
1998-07-06 16:01:13 -05:00
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/* Check args */
|
2013-05-21 12:30:54 -05:00
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HDassert(dst);
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HDassert(src);
|
1998-07-06 16:01:13 -05:00
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1998-07-22 17:11:22 -05:00
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/* Copy regular fields */
|
2014-11-03 15:13:25 -05:00
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dst->select=src->select;
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1998-08-03 19:30:35 -05:00
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1998-07-06 16:01:13 -05:00
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/* Perform correct type of copy based on the type of selection */
|
2014-11-03 15:13:25 -05:00
|
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if((ret_value=(*src->select.type->copy)(dst,src,share_selection))<0)
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "can't copy selection specific information")
|
1998-07-06 16:01:13 -05:00
|
|
|
|
|
2002-08-08 11:52:55 -05:00
|
|
|
|
done:
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
1998-07-06 16:01:13 -05:00
|
|
|
|
} /* H5S_select_copy() */
|
1998-07-23 18:29:44 -05:00
|
|
|
|
|
2003-05-31 11:26:19 -05:00
|
|
|
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: H5S_select_release
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Releases all memory associated with a dataspace selection.
|
|
|
|
|
*
|
|
|
|
|
* Return: Non-negative on success/Negative on failure
|
|
|
|
|
*
|
|
|
|
|
* Programmer: Quincey Koziol
|
|
|
|
|
* Friday, May 30, 2003
|
|
|
|
|
*
|
2004-05-20 10:32:09 -05:00
|
|
|
|
* Note: This routine participates in the "Inlining C function pointers"
|
|
|
|
|
* pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
* defined in H5Sprivate.h.
|
|
|
|
|
*
|
2014-11-03 15:13:25 -05:00
|
|
|
|
* Modifications:
|
|
|
|
|
*
|
2003-05-31 11:26:19 -05:00
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_release(H5S_t *ds)
|
|
|
|
|
{
|
2004-06-13 14:08:17 -05:00
|
|
|
|
herr_t ret_value; /* Return value */
|
2003-05-31 11:26:19 -05:00
|
|
|
|
|
2014-11-03 15:13:25 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-31 11:26:19 -05:00
|
|
|
|
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(ds);
|
2003-05-31 11:26:19 -05:00
|
|
|
|
|
|
|
|
|
/* Call the selection type's release function */
|
2014-11-03 15:13:25 -05:00
|
|
|
|
ret_value=(*ds->select.type->release)(ds);
|
2003-05-31 11:26:19 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-31 11:26:19 -05:00
|
|
|
|
} /* end H5S_select_release() */
|
|
|
|
|
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: H5S_select_get_seq_list
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Retrieves the next sequence of offset/length pairs for an
|
|
|
|
|
* iterator on a dataspace
|
|
|
|
|
*
|
|
|
|
|
* Return: Non-negative on success/Negative on failure
|
|
|
|
|
*
|
|
|
|
|
* Programmer: Quincey Koziol
|
|
|
|
|
* Tuesday, May 18, 2004
|
|
|
|
|
*
|
|
|
|
|
* Note: This routine participates in the "Inlining C function pointers"
|
|
|
|
|
* pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
* defined in H5Sprivate.h.
|
|
|
|
|
*
|
2014-11-03 15:13:25 -05:00
|
|
|
|
* Modifications:
|
|
|
|
|
*
|
2004-05-20 10:32:09 -05:00
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_get_seq_list(const H5S_t *space, unsigned flags,
|
|
|
|
|
H5S_sel_iter_t *iter, size_t maxseq, size_t maxbytes,
|
|
|
|
|
size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len)
|
|
|
|
|
{
|
2004-06-13 14:08:17 -05:00
|
|
|
|
herr_t ret_value; /* Return value */
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
2014-11-03 15:13:25 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
[svn-r19472] Description:
Create a new, more streamlined method of generating I/O sequences when
there is only a single block defined by a hyperslab. This improves the
performance of Ger Van Diepen's (LOFAR team) benchmark by about 20%.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.4 (amazon) in debug mode
Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
2010-09-23 10:03:42 -05:00
|
|
|
|
HDassert(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
/* Call the selection type's get_seq_list function */
|
2014-11-03 15:13:25 -05:00
|
|
|
|
ret_value = (*space->select.type->get_seq_list)(space, flags, iter, maxseq, maxbytes, nseq, nbytes, off, len);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2004-05-20 10:32:09 -05:00
|
|
|
|
} /* end H5S_select_get_seq_list() */
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: H5S_select_serial_size
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Determines the number of bytes required to store the current
|
|
|
|
|
* selection
|
|
|
|
|
*
|
|
|
|
|
* Return: Non-negative on success/Negative on failure
|
|
|
|
|
*
|
|
|
|
|
* Programmer: Quincey Koziol
|
|
|
|
|
* Tuesday, May 18, 2004
|
|
|
|
|
*
|
|
|
|
|
* Note: This routine participates in the "Inlining C function pointers"
|
|
|
|
|
* pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
* defined in H5Sprivate.h.
|
|
|
|
|
*
|
2014-11-03 15:13:25 -05:00
|
|
|
|
* Modifications:
|
|
|
|
|
*
|
2004-05-20 10:32:09 -05:00
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
2004-07-01 15:02:47 -05:00
|
|
|
|
hssize_t
|
2004-05-20 10:32:09 -05:00
|
|
|
|
H5S_select_serial_size(const H5S_t *space)
|
|
|
|
|
{
|
|
|
|
|
hssize_t ret_value; /* Return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
/* Call the selection type's serial_size function */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value=(*space->select.type->serial_size)(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2004-05-20 10:32:09 -05:00
|
|
|
|
} /* end H5S_select_serial_size() */
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_serialize
|
|
|
|
|
PURPOSE
|
|
|
|
|
Serialize the selection for a dataspace into a buffer
|
|
|
|
|
USAGE
|
2015-02-25 13:03:52 -05:00
|
|
|
|
herr_t H5S_select_serialize(space, p)
|
2004-05-20 10:32:09 -05:00
|
|
|
|
const H5S_t *space; IN: Dataspace with selection to serialize
|
2015-02-25 13:03:52 -05:00
|
|
|
|
uint8_t **p; OUT: Pointer to buffer to put serialized
|
|
|
|
|
selection. Will be advanced to end of
|
|
|
|
|
serialized selection.
|
2004-05-20 10:32:09 -05:00
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success/Negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Calls the appropriate dataspace selection callback to serialize the
|
|
|
|
|
current selection into a buffer.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
2015-02-25 13:03:52 -05:00
|
|
|
|
H5S_select_serialize(const H5S_t *space, uint8_t **p)
|
2004-05-20 10:32:09 -05:00
|
|
|
|
{
|
|
|
|
|
herr_t ret_value=SUCCEED; /* Return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
2015-02-25 13:03:52 -05:00
|
|
|
|
HDassert(p);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
/* Call the selection type's serialize function */
|
2015-02-25 13:03:52 -05:00
|
|
|
|
ret_value=(*space->select.type->serialize)(space,p);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2004-05-20 10:32:09 -05:00
|
|
|
|
} /* end H5S_select_serialize() */
|
|
|
|
|
|
1998-07-24 15:46:19 -05:00
|
|
|
|
|
1998-07-06 16:01:13 -05:00
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
1998-08-31 22:35:23 -05:00
|
|
|
|
H5Sget_select_npoints
|
1998-07-06 16:01:13 -05:00
|
|
|
|
PURPOSE
|
|
|
|
|
Get the number of elements in current selection
|
|
|
|
|
USAGE
|
1998-10-26 12:42:48 -05:00
|
|
|
|
hssize_t H5Sget_select_npoints(dsid)
|
1998-07-06 16:01:13 -05:00
|
|
|
|
hid_t dsid; IN: Dataspace ID of selection to query
|
|
|
|
|
RETURNS
|
2003-05-07 16:52:24 -05:00
|
|
|
|
Non-negative on success/Negative on failure
|
1998-07-06 16:01:13 -05:00
|
|
|
|
DESCRIPTION
|
|
|
|
|
Returns the number of elements in current selection for dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
1998-10-26 12:42:48 -05:00
|
|
|
|
hssize_t
|
1998-08-31 22:35:23 -05:00
|
|
|
|
H5Sget_select_npoints(hid_t spaceid)
|
1998-07-06 16:01:13 -05:00
|
|
|
|
{
|
2008-09-10 14:10:41 -05:00
|
|
|
|
H5S_t *space; /* Dataspace to modify selection of */
|
2002-08-08 11:52:55 -05:00
|
|
|
|
hssize_t ret_value; /* return value */
|
1998-07-06 16:01:13 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_API(FAIL)
|
2006-12-18 14:16:17 -05:00
|
|
|
|
H5TRACE1("Hs", "i", spaceid);
|
1998-07-06 16:01:13 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
if(NULL == (space = (H5S_t *)H5I_object_verify(spaceid, H5I_DATASPACE)))
|
|
|
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
|
1998-07-06 16:01:13 -05:00
|
|
|
|
|
2009-01-08 12:27:15 -05:00
|
|
|
|
ret_value = (hssize_t)H5S_GET_SELECT_NPOINTS(space);
|
1998-07-06 16:01:13 -05:00
|
|
|
|
|
2002-08-08 11:52:55 -05:00
|
|
|
|
done:
|
2008-09-10 14:10:41 -05:00
|
|
|
|
FUNC_LEAVE_API(ret_value)
|
1998-08-31 22:35:23 -05:00
|
|
|
|
} /* H5Sget_select_npoints() */
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_get_select_npoints
|
|
|
|
|
PURPOSE
|
|
|
|
|
Get the number of elements in current selection
|
|
|
|
|
USAGE
|
|
|
|
|
hssize_t H5Sget_select_npoints(space)
|
|
|
|
|
H5S_t *space; IN: Dataspace of selection to query
|
|
|
|
|
RETURNS
|
|
|
|
|
The number of elements in selection on success, 0 on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Returns the number of elements in current selection for dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-05-07 16:52:24 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
hssize_t
|
|
|
|
|
H5S_get_select_npoints(const H5S_t *space)
|
|
|
|
|
{
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2009-01-08 12:27:15 -05:00
|
|
|
|
HDassert(space);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
2009-01-08 12:27:15 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI((hssize_t)space->select.num_elem)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
} /* H5S_get_select_npoints() */
|
|
|
|
|
|
1998-08-03 19:30:35 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5Sselect_valid
|
|
|
|
|
PURPOSE
|
|
|
|
|
Check whether the selection fits within the extent, with the current
|
|
|
|
|
offset defined.
|
|
|
|
|
USAGE
|
1998-10-26 17:44:13 -05:00
|
|
|
|
htri_t H5Sselect_void(dsid)
|
1998-08-03 19:30:35 -05:00
|
|
|
|
hid_t dsid; IN: Dataspace ID to query
|
|
|
|
|
RETURNS
|
|
|
|
|
TRUE if the selection fits within the extent, FALSE if it does not and
|
1998-10-26 16:18:54 -05:00
|
|
|
|
Negative on an error.
|
1998-08-03 19:30:35 -05:00
|
|
|
|
DESCRIPTION
|
|
|
|
|
Determines if the current selection at the current offet fits within the
|
|
|
|
|
extent for the dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
2007-01-17 15:48:04 -05:00
|
|
|
|
Christian Chilan 01/17/2007
|
|
|
|
|
Changed the error return value from 0 to FAIL.
|
1998-08-03 19:30:35 -05:00
|
|
|
|
--------------------------------------------------------------------------*/
|
1998-10-26 17:44:13 -05:00
|
|
|
|
htri_t
|
1998-08-27 11:48:50 -05:00
|
|
|
|
H5Sselect_valid(hid_t spaceid)
|
1998-08-03 19:30:35 -05:00
|
|
|
|
{
|
2008-09-10 14:10:41 -05:00
|
|
|
|
H5S_t *space; /* Dataspace to modify selection of */
|
|
|
|
|
htri_t ret_value; /* return value */
|
1998-08-03 19:30:35 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_API(FAIL)
|
2006-12-18 14:16:17 -05:00
|
|
|
|
H5TRACE1("t", "i", spaceid);
|
1998-08-03 19:30:35 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
if(NULL == (space = (H5S_t *)H5I_object_verify(spaceid, H5I_DATASPACE)))
|
|
|
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
|
1998-08-03 19:30:35 -05:00
|
|
|
|
|
2004-05-20 10:32:09 -05:00
|
|
|
|
ret_value = H5S_SELECT_VALID(space);
|
1998-08-03 19:30:35 -05:00
|
|
|
|
|
2002-08-08 11:52:55 -05:00
|
|
|
|
done:
|
2008-09-10 14:10:41 -05:00
|
|
|
|
FUNC_LEAVE_API(ret_value)
|
1998-08-03 19:30:35 -05:00
|
|
|
|
} /* H5Sselect_valid() */
|
2001-11-02 15:31:35 -05:00
|
|
|
|
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_valid
|
|
|
|
|
PURPOSE
|
|
|
|
|
Check whether the selection fits within the extent, with the current
|
|
|
|
|
offset defined.
|
|
|
|
|
USAGE
|
|
|
|
|
htri_t H5S_select_void(space)
|
|
|
|
|
H5S_t *space; IN: Dataspace to query
|
|
|
|
|
RETURNS
|
|
|
|
|
TRUE if the selection fits within the extent, FALSE if it does not and
|
|
|
|
|
Negative on an error.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Determines if the current selection at the current offet fits within the
|
|
|
|
|
extent for the dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-05-07 16:52:24 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
htri_t
|
|
|
|
|
H5S_select_valid(const H5S_t *space)
|
|
|
|
|
{
|
2004-06-23 10:36:35 -05:00
|
|
|
|
htri_t ret_value; /* Return value */
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*space->select.type->is_valid)(space);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
} /* H5S_select_valid() */
|
|
|
|
|
|
1998-11-24 19:29:09 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_deserialize
|
|
|
|
|
PURPOSE
|
|
|
|
|
Deserialize the current selection from a user-provided buffer into a real
|
2002-07-31 10:27:07 -05:00
|
|
|
|
selection in the dataspace.
|
1999-03-10 18:50:03 -05:00
|
|
|
|
USAGE
|
2015-02-25 13:03:52 -05:00
|
|
|
|
herr_t H5S_select_deserialize(space, p)
|
|
|
|
|
H5S_t **space; IN/OUT: Dataspace pointer to place
|
|
|
|
|
selection into. Will be allocated if not
|
|
|
|
|
provided.
|
|
|
|
|
uint8 **p; OUT: Pointer to buffer holding serialized
|
|
|
|
|
selection. Will be advanced to end of
|
|
|
|
|
serialized selection.
|
1999-03-10 18:50:03 -05:00
|
|
|
|
RETURNS
|
2002-07-31 10:27:07 -05:00
|
|
|
|
Non-negative on success/Negative on failure
|
1999-03-10 18:50:03 -05:00
|
|
|
|
DESCRIPTION
|
2002-07-31 10:27:07 -05:00
|
|
|
|
Deserializes the current selection into a buffer. (Primarily for retrieving
|
|
|
|
|
from disk). This routine just hands off to the appropriate routine for each
|
|
|
|
|
type of selection. The format of the serialized information is shown in
|
|
|
|
|
the H5S_select_serialize() header.
|
1999-03-10 18:50:03 -05:00
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
2002-07-31 10:27:07 -05:00
|
|
|
|
herr_t
|
2015-02-25 13:03:52 -05:00
|
|
|
|
H5S_select_deserialize (H5S_t **space, const uint8_t **p)
|
1999-03-10 18:50:03 -05:00
|
|
|
|
{
|
2015-02-25 13:03:52 -05:00
|
|
|
|
H5S_t *tmp_space; /* Pointer to actual dataspace to use, either
|
|
|
|
|
*space or a newly allocated one */
|
|
|
|
|
uint32_t sel_type; /* Pointer to the selection type */
|
2014-11-03 15:13:25 -05:00
|
|
|
|
herr_t ret_value=FAIL; /* return value */
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
2015-02-25 13:03:52 -05:00
|
|
|
|
/* Allocate space if not provided */
|
|
|
|
|
if(!*space) {
|
|
|
|
|
if(NULL == (tmp_space = H5S_create(H5S_SIMPLE)))
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create dataspace")
|
|
|
|
|
} /* end if */
|
|
|
|
|
else
|
|
|
|
|
tmp_space = *space;
|
|
|
|
|
|
|
|
|
|
/* Decode selection type */
|
|
|
|
|
UINT32DECODE(*p, sel_type);
|
|
|
|
|
|
|
|
|
|
/* Skip over the remainder of the header */
|
|
|
|
|
*p += 12;
|
|
|
|
|
|
|
|
|
|
/* Decode and check or patch rank for point and hyperslab selections */
|
|
|
|
|
if((sel_type == H5S_SEL_POINTS) || (sel_type == H5S_SEL_HYPERSLABS)) {
|
|
|
|
|
uint32_t rank; /* Rank of dataspace */
|
|
|
|
|
|
|
|
|
|
/* Decode the rank of the point selection */
|
|
|
|
|
UINT32DECODE(*p,rank);
|
|
|
|
|
|
|
|
|
|
if(!*space)
|
|
|
|
|
/* Patch the rank of the allocated dataspace */
|
|
|
|
|
tmp_space->extent.rank = rank;
|
|
|
|
|
else
|
|
|
|
|
/* Verify the rank of the provided dataspace */
|
|
|
|
|
if(rank != tmp_space->extent.rank)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "rank of serialized selection does not match dataspace")
|
|
|
|
|
} /* end if */
|
|
|
|
|
|
|
|
|
|
/* Make routine for selection type */
|
2002-07-31 10:27:07 -05:00
|
|
|
|
switch(sel_type) {
|
1999-03-10 18:50:03 -05:00
|
|
|
|
case H5S_SEL_POINTS: /* Sequence of points selected */
|
2015-02-25 13:03:52 -05:00
|
|
|
|
ret_value = (*H5S_sel_point->deserialize)(tmp_space, p);
|
1999-03-10 18:50:03 -05:00
|
|
|
|
break;
|
|
|
|
|
|
|
|
|
|
case H5S_SEL_HYPERSLABS: /* Hyperslab selection defined */
|
2015-02-25 13:03:52 -05:00
|
|
|
|
ret_value = (*H5S_sel_hyper->deserialize)(tmp_space, p);
|
1999-03-10 18:50:03 -05:00
|
|
|
|
break;
|
|
|
|
|
|
|
|
|
|
case H5S_SEL_ALL: /* Entire extent selected */
|
2015-02-25 13:03:52 -05:00
|
|
|
|
ret_value = (*H5S_sel_all->deserialize)(tmp_space, p);
|
1999-03-10 18:50:03 -05:00
|
|
|
|
break;
|
|
|
|
|
|
|
|
|
|
case H5S_SEL_NONE: /* Nothing selected */
|
2015-02-25 13:03:52 -05:00
|
|
|
|
ret_value = (*H5S_sel_none->deserialize)(tmp_space, p);
|
2002-07-31 10:27:07 -05:00
|
|
|
|
break;
|
|
|
|
|
|
|
|
|
|
default:
|
1999-03-10 18:50:03 -05:00
|
|
|
|
break;
|
2014-11-03 15:13:25 -05:00
|
|
|
|
}
|
2015-02-25 13:03:52 -05:00
|
|
|
|
if(ret_value < 0)
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTLOAD, FAIL, "can't deserialize selection")
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
2015-02-25 13:03:52 -05:00
|
|
|
|
/* Return space to the caller if allocated */
|
|
|
|
|
if(!*space)
|
|
|
|
|
*space = tmp_space;
|
|
|
|
|
|
2002-08-09 15:48:23 -05:00
|
|
|
|
done:
|
2015-02-25 13:03:52 -05:00
|
|
|
|
/* Free temporary space if not passed to caller (only happens on error) */
|
|
|
|
|
if(!*space && tmp_space)
|
|
|
|
|
if(H5S_close(tmp_space) < 0)
|
|
|
|
|
HDONE_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "can't close dataspace")
|
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2002-07-31 10:27:07 -05:00
|
|
|
|
} /* H5S_select_deserialize() */
|
2001-11-02 15:31:35 -05:00
|
|
|
|
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5Sget_select_bounds
|
|
|
|
|
PURPOSE
|
|
|
|
|
Gets the bounding box containing the selection.
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_get_select_bounds(space, start, end)
|
|
|
|
|
hid_t dsid; IN: Dataspace ID of selection to query
|
2008-01-15 16:29:27 -05:00
|
|
|
|
hsize_t start[]; OUT: Starting coordinate of bounding box
|
|
|
|
|
hsize_t end[]; OUT: Opposite coordinate of bounding box
|
1999-03-10 18:50:03 -05:00
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Retrieves the bounding box containing the current selection and places
|
|
|
|
|
it into the user's buffers. The start and end buffers must be large
|
|
|
|
|
enough to hold the dataspace rank number of coordinates. The bounding box
|
|
|
|
|
exactly contains the selection, ie. if a 2-D element selection is currently
|
|
|
|
|
defined with the following points: (4,5), (6,8) (10,7), the bounding box
|
|
|
|
|
with be (4, 5), (10, 8). Calling this function on a "none" selection
|
|
|
|
|
returns fail.
|
|
|
|
|
The bounding box calculations _does_ include the current offset of the
|
|
|
|
|
selection within the dataspace extent.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
1999-03-10 18:50:03 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
2003-06-04 10:22:23 -05:00
|
|
|
|
herr_t
|
2008-01-15 16:29:27 -05:00
|
|
|
|
H5Sget_select_bounds(hid_t spaceid, hsize_t start[], hsize_t end[])
|
1999-03-10 18:50:03 -05:00
|
|
|
|
{
|
2008-09-10 14:10:41 -05:00
|
|
|
|
H5S_t *space; /* Dataspace to modify selection of */
|
|
|
|
|
herr_t ret_value; /* return value */
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_API(FAIL)
|
2006-12-18 14:16:17 -05:00
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|
|
|
H5TRACE3("e", "i*h*h", spaceid, start, end);
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2008-09-10 14:10:41 -05:00
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|
|
|
if(start == NULL || end == NULL)
|
|
|
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid pointer")
|
|
|
|
|
if(NULL == (space = (H5S_t *)H5I_object_verify(spaceid, H5I_DATASPACE)))
|
|
|
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
2008-09-10 14:10:41 -05:00
|
|
|
|
ret_value = H5S_SELECT_BOUNDS(space, start, end);
|
1999-03-10 18:50:03 -05:00
|
|
|
|
|
2002-08-08 11:52:55 -05:00
|
|
|
|
done:
|
2008-09-10 14:10:41 -05:00
|
|
|
|
FUNC_LEAVE_API(ret_value)
|
1999-03-10 18:50:03 -05:00
|
|
|
|
} /* H5Sget_select_bounds() */
|
2001-11-02 15:31:35 -05:00
|
|
|
|
|
2003-05-31 11:26:19 -05:00
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|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
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|
|
|
|
H5S_get_select_bounds
|
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|
PURPOSE
|
|
|
|
|
Gets the bounding box containing the selection.
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_get_select_bounds(space, start, end)
|
|
|
|
|
H5S_t *space; IN: Dataspace ID of selection to query
|
2004-12-29 09:26:20 -05:00
|
|
|
|
hsize_t *start; OUT: Starting coordinate of bounding box
|
|
|
|
|
hsize_t *end; OUT: Opposite coordinate of bounding box
|
2003-05-31 11:26:19 -05:00
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Retrieves the bounding box containing the current selection and places
|
|
|
|
|
it into the user's buffers. The start and end buffers must be large
|
|
|
|
|
enough to hold the dataspace rank number of coordinates. The bounding box
|
|
|
|
|
exactly contains the selection, ie. if a 2-D element selection is currently
|
|
|
|
|
defined with the following points: (4,5), (6,8) (10,7), the bounding box
|
|
|
|
|
with be (4, 5), (10, 8). Calling this function on a "none" selection
|
|
|
|
|
returns fail.
|
|
|
|
|
The bounding box calculations _does_ include the current offset of the
|
|
|
|
|
selection within the dataspace extent.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
2004-12-29 09:26:20 -05:00
|
|
|
|
H5S_get_select_bounds(const H5S_t *space, hsize_t *start, hsize_t *end)
|
2003-05-31 11:26:19 -05:00
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-31 11:26:19 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
|
|
|
|
HDassert(start);
|
|
|
|
|
HDassert(end);
|
2003-05-31 11:26:19 -05:00
|
|
|
|
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*space->select.type->bounds)(space,start,end);
|
2003-05-31 11:26:19 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-31 11:26:19 -05:00
|
|
|
|
} /* H5S_get_select_bounds() */
|
|
|
|
|
|
[svn-r14307] Description:
- Extracted common code from H5D_select_read/H5D_select_write into single
routine (H5D_select_io) and made H5D_select_read/H5D_select_write
"gateway" routines, passing I/O buffer to operate on in "op" struct.
- Create optimized pathway in H5D_select_io for I/O operations on single
elements.
- Make "get linear offset of first element" callback for each type of
selection (used in "optimized pathway", above)
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-29 13:44:07 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_get_select_offset
|
|
|
|
|
PURPOSE
|
|
|
|
|
Gets the linear offset of the first element for the selection.
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_get_select_offset(space, offset)
|
|
|
|
|
const H5S_t *space; IN: Dataspace pointer of selection to query
|
|
|
|
|
hsize_t *offset; OUT: Linear offset of first element in selection
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Retrieves the linear offset (in "units" of elements) of the first element
|
|
|
|
|
selected within the dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
The offset calculation _does_ include the current offset of the
|
|
|
|
|
selection within the dataspace extent.
|
|
|
|
|
|
|
|
|
|
Calling this function on a "none" selection returns fail.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_get_select_offset(const H5S_t *space, hsize_t *offset)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
[svn-r14307] Description:
- Extracted common code from H5D_select_read/H5D_select_write into single
routine (H5D_select_io) and made H5D_select_read/H5D_select_write
"gateway" routines, passing I/O buffer to operate on in "op" struct.
- Create optimized pathway in H5D_select_io for I/O operations on single
elements.
- Make "get linear offset of first element" callback for each type of
selection (used in "optimized pathway", above)
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-29 13:44:07 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
|
|
|
|
HDassert(space);
|
|
|
|
|
HDassert(offset);
|
|
|
|
|
|
|
|
|
|
ret_value = (*space->select.type->offset)(space, offset);
|
|
|
|
|
|
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
|
|
|
} /* H5S_get_select_offset() */
|
|
|
|
|
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_is_contiguous
|
|
|
|
|
PURPOSE
|
|
|
|
|
Determines if a selection is contiguous in the dataspace
|
|
|
|
|
USAGE
|
|
|
|
|
htri_t H5S_select_is_contiguous(space)
|
|
|
|
|
const H5S_t *space; IN: Dataspace of selection to query
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative (TRUE/FALSE) on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Checks the selection to determine if the points to iterated over will be
|
|
|
|
|
contiguous in the particular dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
htri_t
|
|
|
|
|
H5S_select_is_contiguous(const H5S_t *space)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*space->select.type->is_contiguous)(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2004-05-20 10:32:09 -05:00
|
|
|
|
} /* H5S_select_is_contiguous() */
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_is_single
|
|
|
|
|
PURPOSE
|
|
|
|
|
Determines if a selection is a single block in the dataspace
|
|
|
|
|
USAGE
|
|
|
|
|
htri_t H5S_select_is_single(space)
|
|
|
|
|
const H5S_t *space; IN: Dataspace of selection to query
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative (TRUE/FALSE) on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Checks the selection to determine if it occupies a single block in the
|
|
|
|
|
particular dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
htri_t
|
|
|
|
|
H5S_select_is_single(const H5S_t *space)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*space->select.type->is_single)(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2004-05-20 10:32:09 -05:00
|
|
|
|
} /* H5S_select_is_single() */
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_is_regular
|
|
|
|
|
PURPOSE
|
|
|
|
|
Determines if a selection is "regular" in the dataspace
|
|
|
|
|
USAGE
|
|
|
|
|
htri_t H5S_select_is_regular(space)
|
|
|
|
|
const H5S_t *space; IN: Dataspace of selection to query
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative (TRUE/FALSE) on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Checks the selection to determine if it is "regular" (i.e. a single
|
|
|
|
|
block or a strided pattern) in the particular dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
htri_t
|
|
|
|
|
H5S_select_is_regular(const H5S_t *space)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*space->select.type->is_regular)(space);
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2004-05-20 10:32:09 -05:00
|
|
|
|
} /* H5S_select_is_regular() */
|
|
|
|
|
|
[svn-r14278] Description:
- Remember # of elements in file selection, instead of querying more than
once
- Handle building chunk map for single element as special case
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-20 17:12:52 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_adjust_u
|
|
|
|
|
PURPOSE
|
|
|
|
|
Adjust a selection by subtracting an offset
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_adjust_u(space, offset)
|
|
|
|
|
H5S_t *space; IN/OUT: Pointer to dataspace to adjust
|
|
|
|
|
const hsize_t *offset; IN: Offset to subtract
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Moves a selection by subtracting an offset from it.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_adjust_u(H5S_t *space, const hsize_t *offset)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
[svn-r14278] Description:
- Remember # of elements in file selection, instead of querying more than
once
- Handle building chunk map for single element as special case
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-20 17:12:52 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
|
|
|
|
HDassert(space);
|
|
|
|
|
|
|
|
|
|
ret_value = (*space->select.type->adjust_u)(space, offset);
|
|
|
|
|
|
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
|
|
|
} /* H5S_select_adjust_u() */
|
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_project_scalar
|
|
|
|
|
PURPOSE
|
|
|
|
|
Project a single element selection for a scalar dataspace
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_project_scalar(space, offset)
|
|
|
|
|
const H5S_t *space; IN: Pointer to dataspace to project
|
|
|
|
|
hsize_t *offset; IN/OUT: Offset of projected point
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Projects a selection of a single element into a scalar dataspace, computing
|
|
|
|
|
the offset of the element in the original selection.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_project_scalar(const H5S_t *space, hsize_t *offset)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* Return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
|
|
|
|
HDassert(space);
|
|
|
|
|
HDassert(offset);
|
|
|
|
|
|
|
|
|
|
ret_value = (*space->select.type->project_scalar)(space, offset);
|
|
|
|
|
|
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
|
|
|
} /* H5S_select_project_scalar() */
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_project_simple
|
|
|
|
|
PURPOSE
|
|
|
|
|
Project a selection onto/into a dataspace of different rank
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_project_simple(space, new_space, offset)
|
|
|
|
|
const H5S_t *space; IN: Pointer to dataspace to project
|
|
|
|
|
H5S_t *new_space; IN/OUT: Pointer to dataspace projected onto
|
|
|
|
|
hsize_t *offset; IN/OUT: Offset of projected point
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Projects a selection onto/into a simple dataspace, computing
|
|
|
|
|
the offset of the first element in the original selection.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* Return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
|
|
|
|
HDassert(space);
|
|
|
|
|
HDassert(new_space);
|
|
|
|
|
HDassert(offset);
|
|
|
|
|
|
|
|
|
|
ret_value = (*space->select.type->project_simple)(space, new_space, offset);
|
|
|
|
|
|
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
|
|
|
} /* H5S_select_project_simple() */
|
|
|
|
|
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_iter_init
|
|
|
|
|
PURPOSE
|
|
|
|
|
Initializes iteration information for a selection.
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_iter_init(sel_iter, space, elmt_size)
|
|
|
|
|
H5S_sel_iter_t *sel_iter; OUT: Selection iterator to initialize.
|
|
|
|
|
H5S_t *space; IN: Dataspace object containing selection to
|
|
|
|
|
iterate over
|
|
|
|
|
size_t elmt_size; IN: Size of elements in the selection
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Initialize the selection iterator object to point to the first element
|
|
|
|
|
in the dataspace's selection.
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_iter_init(H5S_sel_iter_t *sel_iter, const H5S_t *space, size_t elmt_size)
|
|
|
|
|
{
|
2004-06-13 14:08:17 -05:00
|
|
|
|
herr_t ret_value; /* Return value */
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
[svn-r20536] Description:
Clean up various warnings & code formatting issues.
Bring changes from Coverity branch to trunk:
r20085:
Purpose: Fix coverity issue 793
Description: Modified H5S_hyper_project_simple_higher() to free the entire span
list in new_space on failure.
r20091:
This is a fix for coverity bug #1683.
Changed the two printfs to use %lu (unsigned long) for printing "dset_size".
r20162:
Purpose: Fix coverity issue 785
Description: Modified H5T_enum_nameof() to free "name" on failure if it was
allocated. Also clarified some code in H5S_hyper_rebuild_helper().
r20189:
Addressed coverity defect 783.
H5SL_new_node() in H5SL.c was failing to free space allocated in its
first alloc if the second alloc failed. Added a call to H5FL_FREE
to address this issue.
This is purely to keep coverity happy -- if this code is ever triggered,
we have much larger problems.
Note that this fix will trigger an unused return value complaint
from coverity next week.
r20190:
Fixed Coverity issues 1561 1565 and 1678 (UNUSED_VALUES) by moving checks of return values to after the function call.
r20191:
Fixed coverity issues 643 644 and 1678 (CHECKED_RETURN).
r20232:
Addressed coverity issues 923-925. Replaced calls to sprintf with calls
to HDsnprintf.
r20233:
Fix coverity issue 662. Don't try to sort 0 attributes in H5Aint.c.
r20234:
Fix coverity issue 664. Check for NULL before dereferencing in H5Gdeprec.c.
r20271:
Purpose: Fix coverity issue 784
Description: Modified H5_debug_mask() to keep a list of files opened for use as
a debugging output stream, and modified H5_term_library to close these files on
exit.
r20272:
addressed coverity issues 838 & 955. Issue was use of strcpy() -- existing
code was safe, but modified to use strncpy() to keep coverity happy.
r20273:
Addresed coverity issues 1388 and 1389.
Initialized sel_iter->type to NULL in H5S_select_iter_init.
r20275:
Purpose: Fix valgrind issue in mf.c
Description: Fixed bug (incomplete if statement) in test_mf_fs_alloc_free() so
the retrieved node gets freed.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
2011-04-17 13:57:07 -05:00
|
|
|
|
HDassert(sel_iter);
|
|
|
|
|
HDassert(space);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Initialize common information */
|
|
|
|
|
|
|
|
|
|
/* Save the dataspace's rank */
|
[svn-r20536] Description:
Clean up various warnings & code formatting issues.
Bring changes from Coverity branch to trunk:
r20085:
Purpose: Fix coverity issue 793
Description: Modified H5S_hyper_project_simple_higher() to free the entire span
list in new_space on failure.
r20091:
This is a fix for coverity bug #1683.
Changed the two printfs to use %lu (unsigned long) for printing "dset_size".
r20162:
Purpose: Fix coverity issue 785
Description: Modified H5T_enum_nameof() to free "name" on failure if it was
allocated. Also clarified some code in H5S_hyper_rebuild_helper().
r20189:
Addressed coverity defect 783.
H5SL_new_node() in H5SL.c was failing to free space allocated in its
first alloc if the second alloc failed. Added a call to H5FL_FREE
to address this issue.
This is purely to keep coverity happy -- if this code is ever triggered,
we have much larger problems.
Note that this fix will trigger an unused return value complaint
from coverity next week.
r20190:
Fixed Coverity issues 1561 1565 and 1678 (UNUSED_VALUES) by moving checks of return values to after the function call.
r20191:
Fixed coverity issues 643 644 and 1678 (CHECKED_RETURN).
r20232:
Addressed coverity issues 923-925. Replaced calls to sprintf with calls
to HDsnprintf.
r20233:
Fix coverity issue 662. Don't try to sort 0 attributes in H5Aint.c.
r20234:
Fix coverity issue 664. Check for NULL before dereferencing in H5Gdeprec.c.
r20271:
Purpose: Fix coverity issue 784
Description: Modified H5_debug_mask() to keep a list of files opened for use as
a debugging output stream, and modified H5_term_library to close these files on
exit.
r20272:
addressed coverity issues 838 & 955. Issue was use of strcpy() -- existing
code was safe, but modified to use strncpy() to keep coverity happy.
r20273:
Addresed coverity issues 1388 and 1389.
Initialized sel_iter->type to NULL in H5S_select_iter_init.
r20275:
Purpose: Fix valgrind issue in mf.c
Description: Fixed bug (incomplete if statement) in test_mf_fs_alloc_free() so
the retrieved node gets freed.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
2011-04-17 13:57:07 -05:00
|
|
|
|
sel_iter->rank = space->extent.rank;
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
[svn-r14356] Description:
Refactor work for bug #956 to simplify a bit and to cover some corner
cases.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-20 17:37:21 -05:00
|
|
|
|
/* Point to the dataspace dimensions, if there are any */
|
|
|
|
|
if(sel_iter->rank > 0)
|
|
|
|
|
sel_iter->dims = space->extent.size;
|
2003-12-10 13:34:53 -05:00
|
|
|
|
else
|
|
|
|
|
sel_iter->dims = NULL;
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
2004-05-01 13:16:54 -05:00
|
|
|
|
/* Save the element size */
|
[svn-r20536] Description:
Clean up various warnings & code formatting issues.
Bring changes from Coverity branch to trunk:
r20085:
Purpose: Fix coverity issue 793
Description: Modified H5S_hyper_project_simple_higher() to free the entire span
list in new_space on failure.
r20091:
This is a fix for coverity bug #1683.
Changed the two printfs to use %lu (unsigned long) for printing "dset_size".
r20162:
Purpose: Fix coverity issue 785
Description: Modified H5T_enum_nameof() to free "name" on failure if it was
allocated. Also clarified some code in H5S_hyper_rebuild_helper().
r20189:
Addressed coverity defect 783.
H5SL_new_node() in H5SL.c was failing to free space allocated in its
first alloc if the second alloc failed. Added a call to H5FL_FREE
to address this issue.
This is purely to keep coverity happy -- if this code is ever triggered,
we have much larger problems.
Note that this fix will trigger an unused return value complaint
from coverity next week.
r20190:
Fixed Coverity issues 1561 1565 and 1678 (UNUSED_VALUES) by moving checks of return values to after the function call.
r20191:
Fixed coverity issues 643 644 and 1678 (CHECKED_RETURN).
r20232:
Addressed coverity issues 923-925. Replaced calls to sprintf with calls
to HDsnprintf.
r20233:
Fix coverity issue 662. Don't try to sort 0 attributes in H5Aint.c.
r20234:
Fix coverity issue 664. Check for NULL before dereferencing in H5Gdeprec.c.
r20271:
Purpose: Fix coverity issue 784
Description: Modified H5_debug_mask() to keep a list of files opened for use as
a debugging output stream, and modified H5_term_library to close these files on
exit.
r20272:
addressed coverity issues 838 & 955. Issue was use of strcpy() -- existing
code was safe, but modified to use strncpy() to keep coverity happy.
r20273:
Addresed coverity issues 1388 and 1389.
Initialized sel_iter->type to NULL in H5S_select_iter_init.
r20275:
Purpose: Fix valgrind issue in mf.c
Description: Fixed bug (incomplete if statement) in test_mf_fs_alloc_free() so
the retrieved node gets freed.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
2011-04-17 13:57:07 -05:00
|
|
|
|
sel_iter->elmt_size = elmt_size;
|
2004-05-01 13:16:54 -05:00
|
|
|
|
|
2003-05-07 16:52:24 -05:00
|
|
|
|
/* Call initialization routine for selection type */
|
[svn-r20536] Description:
Clean up various warnings & code formatting issues.
Bring changes from Coverity branch to trunk:
r20085:
Purpose: Fix coverity issue 793
Description: Modified H5S_hyper_project_simple_higher() to free the entire span
list in new_space on failure.
r20091:
This is a fix for coverity bug #1683.
Changed the two printfs to use %lu (unsigned long) for printing "dset_size".
r20162:
Purpose: Fix coverity issue 785
Description: Modified H5T_enum_nameof() to free "name" on failure if it was
allocated. Also clarified some code in H5S_hyper_rebuild_helper().
r20189:
Addressed coverity defect 783.
H5SL_new_node() in H5SL.c was failing to free space allocated in its
first alloc if the second alloc failed. Added a call to H5FL_FREE
to address this issue.
This is purely to keep coverity happy -- if this code is ever triggered,
we have much larger problems.
Note that this fix will trigger an unused return value complaint
from coverity next week.
r20190:
Fixed Coverity issues 1561 1565 and 1678 (UNUSED_VALUES) by moving checks of return values to after the function call.
r20191:
Fixed coverity issues 643 644 and 1678 (CHECKED_RETURN).
r20232:
Addressed coverity issues 923-925. Replaced calls to sprintf with calls
to HDsnprintf.
r20233:
Fix coverity issue 662. Don't try to sort 0 attributes in H5Aint.c.
r20234:
Fix coverity issue 664. Check for NULL before dereferencing in H5Gdeprec.c.
r20271:
Purpose: Fix coverity issue 784
Description: Modified H5_debug_mask() to keep a list of files opened for use as
a debugging output stream, and modified H5_term_library to close these files on
exit.
r20272:
addressed coverity issues 838 & 955. Issue was use of strcpy() -- existing
code was safe, but modified to use strncpy() to keep coverity happy.
r20273:
Addresed coverity issues 1388 and 1389.
Initialized sel_iter->type to NULL in H5S_select_iter_init.
r20275:
Purpose: Fix valgrind issue in mf.c
Description: Fixed bug (incomplete if statement) in test_mf_fs_alloc_free() so
the retrieved node gets freed.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
2011-04-17 13:57:07 -05:00
|
|
|
|
ret_value = (*space->select.type->iter_init)(sel_iter, space);
|
|
|
|
|
HDassert(sel_iter->type);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
} /* H5S_select_iter_init() */
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_iter_coords
|
|
|
|
|
PURPOSE
|
|
|
|
|
Get the coordinates of the current iterator position
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_iter_coords(sel_iter,coords)
|
|
|
|
|
H5S_sel_iter_t *sel_iter; IN: Selection iterator to query
|
2004-12-29 09:26:20 -05:00
|
|
|
|
hsize_t *coords; OUT: Array to place iterator coordinates in
|
2003-05-07 16:52:24 -05:00
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
The current location of the iterator within the selection is placed in
|
|
|
|
|
the COORDS array.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-05-07 16:52:24 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
2014-03-07 14:12:20 -05:00
|
|
|
|
H5S_select_iter_coords(const H5S_sel_iter_t *sel_iter, hsize_t *coords)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(sel_iter);
|
|
|
|
|
HDassert(coords);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Call iter_coords routine for selection type */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*sel_iter->type->iter_coords)(sel_iter,coords);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
} /* H5S_select_iter_coords() */
|
|
|
|
|
|
2004-06-23 10:36:35 -05:00
|
|
|
|
#ifdef LATER
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_iter_block
|
|
|
|
|
PURPOSE
|
|
|
|
|
Get the block of the current iterator position
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_iter_block(sel_iter,start,end)
|
|
|
|
|
const H5S_sel_iter_t *sel_iter; IN: Selection iterator to query
|
2004-12-29 09:26:20 -05:00
|
|
|
|
hsize_t *start; OUT: Array to place iterator start block coordinates
|
|
|
|
|
hsize_t *end; OUT: Array to place iterator end block coordinates
|
2003-06-04 10:22:23 -05:00
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
The current location of the iterator within the selection is placed in
|
|
|
|
|
the COORDS array.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-06-04 10:22:23 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
static herr_t
|
2014-03-07 14:12:20 -05:00
|
|
|
|
H5S_select_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end)
|
2003-06-04 10:22:23 -05:00
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOINIT_NOERR
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(iter);
|
|
|
|
|
HDassert(start);
|
|
|
|
|
HDassert(end);
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/* Call iter_block routine for selection type */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*iter->type->iter_block)(iter,start,end);
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-06-04 10:22:23 -05:00
|
|
|
|
} /* H5S_select_iter_block() */
|
2004-06-23 10:36:35 -05:00
|
|
|
|
#endif /* LATER */
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_iter_nelmts
|
|
|
|
|
PURPOSE
|
|
|
|
|
Get the number of elements left to iterate over in selection
|
|
|
|
|
USAGE
|
|
|
|
|
hssize_t H5S_select_iter_nelmts(sel_iter)
|
|
|
|
|
H5S_sel_iter_t *sel_iter; IN: Selection iterator to query
|
|
|
|
|
RETURNS
|
|
|
|
|
The number of elements in selection on success, 0 on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Returns the number of elements in current selection for dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-05-07 16:52:24 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
hsize_t
|
2014-03-07 14:12:20 -05:00
|
|
|
|
H5S_select_iter_nelmts(const H5S_sel_iter_t *sel_iter)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
{
|
|
|
|
|
hsize_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(sel_iter);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Call iter_nelmts routine for selection type */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*sel_iter->type->iter_nelmts)(sel_iter);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
} /* H5S_select_iter_nelmts() */
|
|
|
|
|
|
2004-06-23 10:36:35 -05:00
|
|
|
|
#ifdef LATER
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_iter_has_next_block
|
|
|
|
|
PURPOSE
|
|
|
|
|
Check if there is another block available in the selection iterator
|
|
|
|
|
USAGE
|
|
|
|
|
htri_t H5S_select_iter_has_next_block(sel_iter)
|
|
|
|
|
const H5S_sel_iter_t *sel_iter; IN: Selection iterator to query
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Check if there is another block available to advance to in the selection
|
|
|
|
|
iterator.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-06-04 10:22:23 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
static htri_t
|
2014-03-07 14:12:20 -05:00
|
|
|
|
H5S_select_iter_has_next_block(const H5S_sel_iter_t *iter)
|
2003-06-04 10:22:23 -05:00
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOINIT_NOERR
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(iter);
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/* Call iter_has_next_block routine for selection type */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*iter->type->iter_has_next_block)(iter);
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-06-04 10:22:23 -05:00
|
|
|
|
} /* H5S_select_iter_has_next_block() */
|
2004-06-23 10:36:35 -05:00
|
|
|
|
#endif /* LATER */
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_iter_next
|
|
|
|
|
PURPOSE
|
2003-06-04 10:22:23 -05:00
|
|
|
|
Advance selection iterator to next element
|
2003-05-07 16:52:24 -05:00
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_iter_next(iter, nelem)
|
|
|
|
|
H5S_sel_iter_t *iter; IN/OUT: Selection iterator to change
|
|
|
|
|
size_t nelem; IN: Number of elements to advance by
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Move the current element for the selection iterator to the NELEM'th next
|
|
|
|
|
element in the selection.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-05-07 16:52:24 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_iter_next(H5S_sel_iter_t *iter, size_t nelem)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(iter);
|
|
|
|
|
HDassert(nelem>0);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
2003-06-04 10:22:23 -05:00
|
|
|
|
/* Call iter_next routine for selection type */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*iter->type->iter_next)(iter,nelem);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Decrement the number of elements left in selection */
|
|
|
|
|
iter->elmt_left-=nelem;
|
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
} /* H5S_select_iter_next() */
|
|
|
|
|
|
2004-06-23 10:36:35 -05:00
|
|
|
|
#ifdef LATER
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_iter_next_block
|
|
|
|
|
PURPOSE
|
|
|
|
|
Advance selection iterator to next block
|
|
|
|
|
USAGE
|
2004-05-20 10:32:09 -05:00
|
|
|
|
herr_t H5S_select_iter_next_block(iter)
|
2003-06-04 10:22:23 -05:00
|
|
|
|
H5S_sel_iter_t *iter; IN/OUT: Selection iterator to change
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success, negative on failure.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Move the current element for the selection iterator to the next
|
|
|
|
|
block in the selection.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
Doesn't maintain the 'elmt_left' field of the selection iterator.
|
2004-05-20 10:32:09 -05:00
|
|
|
|
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-06-04 10:22:23 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
static herr_t
|
|
|
|
|
H5S_select_iter_next_block(H5S_sel_iter_t *iter)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(iter);
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
|
|
|
|
/* Call iter_next_block routine for selection type */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*iter->type->iter_next_block)(iter);
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-06-04 10:22:23 -05:00
|
|
|
|
} /* H5S_select_iter_next_block() */
|
2004-06-23 10:36:35 -05:00
|
|
|
|
#endif /* LATER */
|
2003-06-04 10:22:23 -05:00
|
|
|
|
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_iter_release
|
|
|
|
|
PURPOSE
|
|
|
|
|
Release a selection iterator's resources.
|
|
|
|
|
USAGE
|
|
|
|
|
hssize_t H5S_select_iter_release(sel_iter)
|
|
|
|
|
H5S_sel_iter_t *sel_iter; IN: Selection iterator to query
|
|
|
|
|
RETURNS
|
|
|
|
|
The number of elements in selection on success, 0 on failure
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Returns the number of elements in current selection for dataspace.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
2004-05-20 10:32:09 -05:00
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-05-07 16:52:24 -05:00
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_iter_release(H5S_sel_iter_t *sel_iter)
|
|
|
|
|
{
|
|
|
|
|
herr_t ret_value; /* return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(sel_iter);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Call selection type-specific release routine */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value = (*sel_iter->type->iter_release)(sel_iter);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
} /* H5S_select_iter_release() */
|
|
|
|
|
|
1999-06-23 21:16:13 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
2002-04-09 07:47:34 -05:00
|
|
|
|
H5S_select_iterate
|
1999-06-23 21:16:13 -05:00
|
|
|
|
PURPOSE
|
|
|
|
|
Iterate over the selected elements in a memory buffer.
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_iterate(buf, type_id, space, operator, operator_data)
|
|
|
|
|
void *buf; IN/OUT: Buffer containing elements to iterate over
|
|
|
|
|
hid_t type_id; IN: Datatype ID of BUF array.
|
|
|
|
|
H5S_t *space; IN: Dataspace object containing selection to iterate over
|
1999-08-10 13:54:06 -05:00
|
|
|
|
H5D_operator_t op; IN: Function pointer to the routine to be
|
1999-06-23 21:16:13 -05:00
|
|
|
|
called for each element in BUF iterated over.
|
|
|
|
|
void *operator_data; IN/OUT: Pointer to any user-defined data
|
|
|
|
|
associated with the operation.
|
|
|
|
|
RETURNS
|
|
|
|
|
Returns the return value of the last operator if it was non-zero, or zero
|
|
|
|
|
if all elements were processed. Otherwise returns a negative value.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Iterates over the selected elements in a memory buffer, calling the user's
|
|
|
|
|
callback function for each element. The selection in the dataspace is
|
|
|
|
|
modified so that any elements already iterated over are removed from the
|
|
|
|
|
selection if the iteration is interrupted (by the H5D_operator_t function
|
|
|
|
|
returning non-zero) in the "middle" of the iteration and may be re-started
|
|
|
|
|
by the user where it left off.
|
|
|
|
|
|
|
|
|
|
NOTE: Until "subtracting" elements from a selection is implemented,
|
|
|
|
|
the selection is not modified.
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
2003-05-07 16:52:24 -05:00
|
|
|
|
H5S_select_iterate(void *buf, hid_t type_id, const H5S_t *space, H5D_operator_t op,
|
1999-06-23 21:16:13 -05:00
|
|
|
|
void *operator_data)
|
|
|
|
|
{
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
H5T_t *dt; /* Datatype structure */
|
[svn-r6252] Purpose:
Lots of performance improvements & a couple new internal API interfaces.
Description:
Performance Improvements:
- Cached file offset & length sizes in shared file struct, to avoid
constantly looking them up in the FCPL.
- Generic property improvements:
- Added "revision" number to generic property classes to speed
up comparisons.
- Changed method of storing properties from using a hash-table
to the TBBT routines in the library.
- Share the propery names between classes and the lists derived
from them.
- Removed redundant 'def_value' buffer from each property.
- Switching code to use a "copy on write" strategy for
properties in each list, where the properties in each list
are shared with the properties in the class, until a
property's value is changed in a list.
- Fixed error in layout code which was allocating too many buffers.
- Redefined public macros of the form (H5open()/H5check, <variable>)
internally to only be (<variable>), avoiding innumerable useless
calls to H5open() and H5check_version().
- Reuse already zeroed buffers in H5F_contig_fill instead of
constantly re-zeroing them.
- Don't write fill values if writing entire dataset.
- Use gettimeofday() system call instead of time() system when
checking the modification time of a dataset.
- Added reference counted string API and use it for tracking the
names of objects opening in a file (for the ID->name code).
- Removed redundant H5P_get() calls in B-tree routines.
- Redefine H5T datatype macros internally to the library, to avoid
calling H5check redundantly.
- Keep dataspace information for dataset locally instead of reading
from disk each time. Added new module to track open objects
in a file, to allow this (which will be useful eventually for
some FPH5 metadata caching issues).
- Remove H5AC_find macro which was inlining metadata cache lookups,
and call function instead.
- Remove redundant memset() calls from H5G_namei() routine.
- Remove redundant checking of object type when locating objects
in metadata cache and rely on the address only.
- Create default dataset object to use when default dataset creation
property list is used to create datasets, bypassing querying
for all the property list values.
- Use default I/O vector size when performing raw data with the
default dataset transfer property list, instead of querying for
I/O vector size.
- Remove H5P_DEFAULT internally to the library, replacing it with
more specific default property list based on the type of
property list needed.
- Remove redundant memset() calls in object header message (H5O*)
routines.
- Remove redunant memset() calls in data I/O routines.
- Split free-list allocation routines into malloc() and calloc()-
like routines, instead of one combined routine.
- Remove lots of indirection in H5O*() routines.
- Simplify metadata cache entry comparison routine (used when
flushing entire cache out).
- Only enable metadata cache statistics when H5AC_DEBUG is turned
on, instead of always tracking them.
- Simplify address comparison macro (H5F_addr_eq).
- Remove redundant metadata cache entry protections during dataset
creation by protecting the object header once and making all
the modifications necessary for the dataset creation before
unprotecting it.
- Reduce # of "number of element in extent" computations performed
by computing and storing the value during dataspace creation.
- Simplify checking for group location's file information, when file
has not been involving in file-mounting operations.
- Use binary encoding for modification time, instead of ASCII.
- Hoist H5HL_peek calls (to get information in a local heap)
out of loops in many group routine.
- Use static variable for iterators of selections, instead of
dynamically allocation them each time.
- Lookup & insert new entries in one step, avoiding traversing
group's B-tree twice.
- Fixed memory leak in H5Gget_objname_idx() routine (tangential to
performance improvements, but fixed along the way).
- Use free-list for reference counted strings.
- Don't bother copying object names into cached group entries,
since they are re-created when an object is opened.
The benchmark I used to measure these results created several thousand
small (2K) datasets in a file and wrote out the data for them. This is
Elena's "regular.c" benchmark.
These changes resulted in approximately ~4.3x speedup of the
development branch when compared to the previous code in the
development branch and ~1.4x speedup compared to the release
branch.
Additionally, these changes reduce the total memory used (code and
data) by the development branch by ~800KB, bringing the development
branch back into the same ballpark as the release branch.
I'll send out a more detailed description of the benchmark results
as a followup note.
New internal API routines:
Added "reference counted strings" API for tracking strings that get
used by multiple owners without duplicating the strings.
Added "ternary search tree" API for text->object mappings.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
Other platforms/configurations tested?
FreeBSD 4.7 (sleipnir) serial & parallel
Solaris 2.6 (baldric) serial
2003-01-09 12:20:03 -05:00
|
|
|
|
H5S_sel_iter_t iter; /* Selection iteration info */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
hbool_t iter_init = FALSE; /* Selection iteration info has been initialized */
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
hssize_t nelmts; /* Number of elements in selection */
|
|
|
|
|
hsize_t space_size[H5O_LAYOUT_NDIMS]; /* Dataspace size */
|
2004-05-01 11:10:17 -05:00
|
|
|
|
size_t max_elem; /* Maximum number of elements allowed in sequences */
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
size_t elmt_size; /* Datatype size */
|
2004-12-29 09:26:20 -05:00
|
|
|
|
unsigned ndims; /* Number of dimensions in dataspace */
|
2014-03-07 14:12:20 -05:00
|
|
|
|
herr_t user_ret = 0; /* User's return value */
|
|
|
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
1999-06-23 21:16:13 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
1999-06-23 21:16:13 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
HDassert(buf);
|
|
|
|
|
HDassert(H5I_DATATYPE == H5I_get_type(type_id));
|
|
|
|
|
HDassert(space);
|
|
|
|
|
HDassert(op);
|
1999-06-23 21:16:13 -05:00
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Get the datatype size */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
if(NULL == (dt = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE)))
|
|
|
|
|
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an valid base datatype")
|
|
|
|
|
if(0 == (elmt_size = H5T_get_size(dt)))
|
|
|
|
|
HGOTO_ERROR(H5E_DATATYPE, H5E_BADSIZE, FAIL, "datatype size invalid")
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Initialize iterator */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
if(H5S_select_iter_init(&iter, space, elmt_size) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator")
|
|
|
|
|
iter_init = TRUE; /* Selection iteration info has been initialized */
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Get the number of elements in selection */
|
2009-01-08 12:27:15 -05:00
|
|
|
|
if((nelmts = (hssize_t)H5S_GET_SELECT_NPOINTS(space)) < 0)
|
2008-09-10 14:10:41 -05:00
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOUNT, FAIL, "can't get number of elements selected")
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Get the rank of the dataspace */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
ndims = space->extent.rank;
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
2008-09-10 14:10:41 -05:00
|
|
|
|
if(ndims > 0) {
|
2002-10-15 16:12:48 -05:00
|
|
|
|
/* Copy the size of the space */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
HDassert(space->extent.size);
|
|
|
|
|
HDmemcpy(space_size, space->extent.size, ndims * sizeof(hsize_t));
|
|
|
|
|
} /* end if */
|
|
|
|
|
space_size[ndims] = elmt_size;
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Compute the maximum number of bytes required */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
H5_ASSIGN_OVERFLOW(max_elem, nelmts, hssize_t, size_t);
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Loop, while elements left in selection */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
while(max_elem > 0 && user_ret == 0) {
|
2014-03-07 14:12:20 -05:00
|
|
|
|
hsize_t off[H5D_IO_VECTOR_SIZE]; /* Array to store sequence offsets */
|
|
|
|
|
size_t len[H5D_IO_VECTOR_SIZE]; /* Array to store sequence lengths */
|
|
|
|
|
size_t nelem; /* Number of elements used in sequences */
|
|
|
|
|
size_t nseq; /* Number of sequences generated */
|
|
|
|
|
size_t curr_seq; /* Current sequence being worked on */
|
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Get the sequences of bytes */
|
2006-11-01 23:54:19 -05:00
|
|
|
|
if(H5S_SELECT_GET_SEQ_LIST(space, 0, &iter, (size_t)H5D_IO_VECTOR_SIZE, max_elem, &nseq, &nelem, off, len) < 0)
|
2008-09-10 14:10:41 -05:00
|
|
|
|
HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "sequence length generation failed")
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Loop, while sequences left to process */
|
2014-03-07 14:12:20 -05:00
|
|
|
|
for(curr_seq = 0; curr_seq < nseq && user_ret == 0; curr_seq++) {
|
|
|
|
|
hsize_t curr_off; /* Current offset within sequence */
|
|
|
|
|
size_t curr_len; /* Length of bytes left to process in sequence */
|
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Get the current offset */
|
2009-01-08 12:27:15 -05:00
|
|
|
|
curr_off = off[curr_seq];
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Get the number of bytes in sequence */
|
2009-01-08 12:27:15 -05:00
|
|
|
|
curr_len = len[curr_seq];
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Loop, while bytes left in sequence */
|
2009-01-08 12:27:15 -05:00
|
|
|
|
while(curr_len > 0 && user_ret == 0) {
|
2014-03-07 14:12:20 -05:00
|
|
|
|
hsize_t coords[H5O_LAYOUT_NDIMS]; /* Coordinates of element in dataspace */
|
|
|
|
|
hsize_t tmp_off; /* Temporary offset within sequence */
|
|
|
|
|
uint8_t *loc; /* Current element location in buffer */
|
|
|
|
|
int i; /* Local Index variable */
|
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Compute the coordinate from the offset */
|
2009-01-08 12:27:15 -05:00
|
|
|
|
for(i = (int)ndims, tmp_off = curr_off; i >= 0; i--) {
|
|
|
|
|
coords[i] = tmp_off % space_size[i];
|
|
|
|
|
tmp_off /= space_size[i];
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
} /* end for */
|
|
|
|
|
|
|
|
|
|
/* Get the location within the user's buffer */
|
2009-01-08 12:27:15 -05:00
|
|
|
|
loc = (unsigned char *)buf + curr_off;
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Call user's callback routine */
|
2014-03-07 14:12:20 -05:00
|
|
|
|
user_ret = (*op)(loc, type_id, ndims, coords, operator_data);
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Increment offset in dataspace */
|
2014-03-07 14:12:20 -05:00
|
|
|
|
curr_off += elmt_size;
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Decrement number of bytes left in sequence */
|
2014-03-07 14:12:20 -05:00
|
|
|
|
curr_len -= elmt_size;
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
} /* end while */
|
|
|
|
|
} /* end for */
|
1999-06-23 21:16:13 -05:00
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Decrement number of elements left to process */
|
2014-03-07 14:12:20 -05:00
|
|
|
|
max_elem -= nelem;
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
} /* end while */
|
1999-06-23 21:16:13 -05:00
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Set return value */
|
2014-03-07 14:12:20 -05:00
|
|
|
|
ret_value = user_ret;
|
1999-06-23 21:16:13 -05:00
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
done:
|
|
|
|
|
/* Release selection iterator */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
if(iter_init && H5S_SELECT_ITER_RELEASE(&iter) < 0)
|
|
|
|
|
HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator")
|
1999-06-23 21:16:13 -05:00
|
|
|
|
|
2008-09-10 14:10:41 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
1999-06-23 21:16:13 -05:00
|
|
|
|
} /* end H5S_select_iterate() */
|
|
|
|
|
|
2002-02-07 11:21:24 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5Sget_select_type
|
|
|
|
|
PURPOSE
|
|
|
|
|
Retrieve the type of selection in a dataspace
|
|
|
|
|
USAGE
|
|
|
|
|
H5S_sel_type H5Sget_select_type(space_id)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
hid_t space_id; IN: Dataspace object to query
|
2002-02-07 11:21:24 -05:00
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success/Negative on failure. Return value is from the
|
|
|
|
|
set of values in the H5S_sel_type enumerated type.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
This function retrieves the type of selection currently defined for
|
|
|
|
|
a dataspace.
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
H5S_sel_type
|
|
|
|
|
H5Sget_select_type(hid_t space_id)
|
|
|
|
|
{
|
2008-09-10 14:10:41 -05:00
|
|
|
|
H5S_t *space; /* dataspace to modify */
|
|
|
|
|
H5S_sel_type ret_value; /* Return value */
|
2002-02-07 11:21:24 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_API(H5S_SEL_ERROR)
|
2006-12-18 14:16:17 -05:00
|
|
|
|
H5TRACE1("St", "i", space_id);
|
2002-02-07 11:21:24 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
if(NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
|
|
|
|
|
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, H5S_SEL_ERROR, "not a dataspace")
|
2002-02-07 11:21:24 -05:00
|
|
|
|
|
2002-08-08 11:52:55 -05:00
|
|
|
|
/* Set return value */
|
2008-09-10 14:10:41 -05:00
|
|
|
|
ret_value = H5S_GET_SELECT_TYPE(space);
|
2002-08-08 11:52:55 -05:00
|
|
|
|
|
|
|
|
|
done:
|
2008-09-10 14:10:41 -05:00
|
|
|
|
FUNC_LEAVE_API(ret_value)
|
2002-02-07 11:21:24 -05:00
|
|
|
|
} /* end H5Sget_select_type() */
|
|
|
|
|
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_get_select_type
|
|
|
|
|
PURPOSE
|
|
|
|
|
Retrieve the type of selection in a dataspace
|
|
|
|
|
USAGE
|
|
|
|
|
H5S_sel_type H5Sget_select_type(space)
|
|
|
|
|
const H5S_t *space; IN: Dataspace object to query
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success/Negative on failure. Return value is from the
|
|
|
|
|
set of values in the H5S_sel_type enumerated type.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
This function retrieves the type of selection currently defined for
|
|
|
|
|
a dataspace.
|
2004-05-20 10:32:09 -05:00
|
|
|
|
COMMENTS
|
|
|
|
|
This routine participates in the "Inlining C function pointers"
|
|
|
|
|
pattern, don't call it directly, use the appropriate macro
|
|
|
|
|
defined in H5Sprivate.h.
|
2003-05-07 16:52:24 -05:00
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
H5S_sel_type
|
|
|
|
|
H5S_get_select_type(const H5S_t *space)
|
|
|
|
|
{
|
|
|
|
|
H5S_sel_type ret_value; /* Return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI_NOINIT_NOERR
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2013-05-21 12:30:54 -05:00
|
|
|
|
HDassert(space);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
|
|
|
|
/* Set return value */
|
2004-06-13 14:08:17 -05:00
|
|
|
|
ret_value=H5S_GET_SELECT_TYPE(space);
|
2003-05-07 16:52:24 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
2003-05-07 16:52:24 -05:00
|
|
|
|
} /* end H5S_get_select_type() */
|
|
|
|
|
|
2002-04-03 12:07:14 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_shape_same
|
|
|
|
|
PURPOSE
|
|
|
|
|
Check if two selections are the same shape
|
|
|
|
|
USAGE
|
|
|
|
|
htri_t H5S_select_shape_same(space1, space2)
|
|
|
|
|
const H5S_t *space1; IN: 1st Dataspace pointer to compare
|
|
|
|
|
const H5S_t *space2; IN: 2nd Dataspace pointer to compare
|
|
|
|
|
RETURNS
|
|
|
|
|
TRUE/FALSE/FAIL
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Checks to see if the current selection in the dataspaces are the same
|
|
|
|
|
dimensionality and shape.
|
|
|
|
|
This is primarily used for reading the entire selection in one swoop.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
Assumes that there is only a single "block" for hyperslab selections.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
Modified function to view identical shapes with different dimensions
|
|
|
|
|
as being the same under some circumstances.
|
2002-04-03 12:07:14 -05:00
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
htri_t
|
|
|
|
|
H5S_select_shape_same(const H5S_t *space1, const H5S_t *space2)
|
|
|
|
|
{
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
H5S_sel_iter_t iter_a; /* Selection a iteration info */
|
|
|
|
|
H5S_sel_iter_t iter_b; /* Selection b iteration info */
|
2014-11-03 15:13:25 -05:00
|
|
|
|
hbool_t iter_a_init = 0; /* Selection a iteration info has been initialized */
|
|
|
|
|
hbool_t iter_b_init = 0; /* Selection b iteration info has been initialized */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
htri_t ret_value = TRUE; /* Return value */
|
2002-04-03 12:07:14 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
2002-04-03 12:07:14 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
HDassert(space1);
|
|
|
|
|
HDassert(space2);
|
|
|
|
|
|
|
|
|
|
/* Special case for one or both dataspaces being scalar */
|
|
|
|
|
if(space1->extent.rank == 0 || space2->extent.rank == 0) {
|
|
|
|
|
/* Check for different number of elements selected */
|
|
|
|
|
if(H5S_GET_SELECT_NPOINTS(space1) != H5S_GET_SELECT_NPOINTS(space2))
|
|
|
|
|
HGOTO_DONE(FALSE)
|
2003-06-04 10:22:23 -05:00
|
|
|
|
} /* end if */
|
|
|
|
|
else {
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
const H5S_t *space_a; /* Dataspace with larger rank */
|
|
|
|
|
const H5S_t *space_b; /* Dataspace with smaller rank */
|
|
|
|
|
unsigned space_a_rank; /* Number of dimensions of dataspace A */
|
|
|
|
|
unsigned space_b_rank; /* Number of dimensions of dataspace B */
|
|
|
|
|
|
|
|
|
|
/* need to be able to handle spaces of different rank:
|
|
|
|
|
*
|
|
|
|
|
* To simplify logic, let space_a point to the element of the set
|
|
|
|
|
* {space1, space2} with the largest rank or space1 if the ranks
|
|
|
|
|
* are identical.
|
|
|
|
|
*
|
|
|
|
|
* Similarly, let space_b point to the element of {space1, space2}
|
|
|
|
|
* with the smallest rank, or space2 if they are identical.
|
|
|
|
|
*
|
|
|
|
|
* Let: space_a_rank be the rank of space_a,
|
|
|
|
|
* space_b_rank be the rank of space_b,
|
|
|
|
|
* delta_rank = space_a_rank - space_b_rank.
|
|
|
|
|
*
|
|
|
|
|
* Set all this up below.
|
|
|
|
|
*/
|
|
|
|
|
if(space1->extent.rank >= space2->extent.rank) {
|
|
|
|
|
space_a = space1;
|
|
|
|
|
space_a_rank = space_a->extent.rank;
|
|
|
|
|
|
|
|
|
|
space_b = space2;
|
|
|
|
|
space_b_rank = space_b->extent.rank;
|
|
|
|
|
} /* end if */
|
|
|
|
|
else {
|
|
|
|
|
space_a = space2;
|
|
|
|
|
space_a_rank = space_a->extent.rank;
|
|
|
|
|
|
|
|
|
|
space_b = space1;
|
|
|
|
|
space_b_rank = space_b->extent.rank;
|
|
|
|
|
} /* end else */
|
|
|
|
|
HDassert(space_a_rank >= space_b_rank);
|
|
|
|
|
HDassert(space_b_rank > 0);
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
|
|
|
|
|
/* Check for different number of elements selected */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if(H5S_GET_SELECT_NPOINTS(space_a) != H5S_GET_SELECT_NPOINTS(space_b))
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
/* Check for "easy" cases before getting into generalized block iteration code */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if((H5S_GET_SELECT_TYPE(space_a) == H5S_SEL_ALL) && (H5S_GET_SELECT_TYPE(space_b) == H5S_SEL_ALL)) {
|
|
|
|
|
hsize_t dims1[H5O_LAYOUT_NDIMS]; /* End point of selection block in dataspace #1 */
|
|
|
|
|
hsize_t dims2[H5O_LAYOUT_NDIMS]; /* End point of selection block in dataspace #2 */
|
|
|
|
|
int space_a_dim; /* Current dimension in dataspace A */
|
|
|
|
|
int space_b_dim; /* Current dimension in dataspace B */
|
|
|
|
|
|
|
|
|
|
if(H5S_get_simple_extent_dims(space_a, dims1, NULL) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "unable to get dimensionality")
|
|
|
|
|
if(H5S_get_simple_extent_dims(space_b, dims2, NULL) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "unable to get dimensionality")
|
|
|
|
|
|
|
|
|
|
space_a_dim = (int)space_a_rank - 1;
|
|
|
|
|
space_b_dim = (int)space_b_rank - 1;
|
|
|
|
|
|
|
|
|
|
/* recall that space_a_rank >= space_b_rank.
|
|
|
|
|
*
|
|
|
|
|
* In the following while loop, we test to see if space_a and space_b
|
|
|
|
|
* have identical size in all dimensions they have in common.
|
|
|
|
|
*/
|
|
|
|
|
while(space_b_dim >= 0) {
|
|
|
|
|
if(dims1[space_a_dim] != dims2[space_b_dim])
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
space_a_dim--;
|
|
|
|
|
space_b_dim--;
|
|
|
|
|
} /* end while */
|
|
|
|
|
|
2014-11-03 15:13:25 -05:00
|
|
|
|
/* Since we are selecting the entire spaces, we must also verify that space_a
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
* has size 1 in all dimensions that it does not share with space_b.
|
|
|
|
|
*/
|
|
|
|
|
while(space_a_dim >= 0) {
|
|
|
|
|
if(dims1[space_a_dim] != 1)
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
space_a_dim--;
|
|
|
|
|
} /* end while */
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
} /* end if */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
else if((H5S_GET_SELECT_TYPE(space1) == H5S_SEL_NONE) || (H5S_GET_SELECT_TYPE(space2) == H5S_SEL_NONE)) {
|
|
|
|
|
HGOTO_DONE(TRUE)
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
} /* end if */
|
2014-11-03 15:13:25 -05:00
|
|
|
|
else if((H5S_GET_SELECT_TYPE(space_a) == H5S_SEL_HYPERSLABS && space_a->select.sel_info.hslab->diminfo_valid)
|
|
|
|
|
&& (H5S_GET_SELECT_TYPE(space_b) == H5S_SEL_HYPERSLABS && space_b->select.sel_info.hslab->diminfo_valid)) {
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
int space_a_dim; /* Current dimension in dataspace A */
|
|
|
|
|
int space_b_dim; /* Current dimension in dataspace B */
|
|
|
|
|
|
|
|
|
|
space_a_dim = (int)space_a_rank - 1;
|
|
|
|
|
space_b_dim = (int)space_b_rank - 1;
|
|
|
|
|
|
|
|
|
|
/* check that the shapes are the same in the common dimensions, and that
|
|
|
|
|
* block == 1 in all dimensions that appear only in space_a.
|
|
|
|
|
*/
|
|
|
|
|
while(space_b_dim >= 0) {
|
|
|
|
|
if(space_a->select.sel_info.hslab->opt_diminfo[space_a_dim].stride !=
|
|
|
|
|
space_b->select.sel_info.hslab->opt_diminfo[space_b_dim].stride)
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
if(space_a->select.sel_info.hslab->opt_diminfo[space_a_dim].count !=
|
|
|
|
|
space_b->select.sel_info.hslab->opt_diminfo[space_b_dim].count)
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
if(space_a->select.sel_info.hslab->opt_diminfo[space_a_dim].block !=
|
|
|
|
|
space_b->select.sel_info.hslab->opt_diminfo[space_b_dim].block)
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
space_a_dim--;
|
|
|
|
|
space_b_dim--;
|
|
|
|
|
} /* end while */
|
|
|
|
|
|
|
|
|
|
while(space_a_dim >= 0) {
|
|
|
|
|
if(space_a->select.sel_info.hslab->opt_diminfo[space_a_dim].block != 1)
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
space_a_dim--;
|
|
|
|
|
} /* end while */
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
} /* end if */
|
|
|
|
|
/* Iterate through all the blocks in the selection */
|
|
|
|
|
else {
|
2014-11-03 15:13:25 -05:00
|
|
|
|
hsize_t start_a[H5O_LAYOUT_NDIMS]; /* Start point of selection block in dataspace a */
|
|
|
|
|
hsize_t start_b[H5O_LAYOUT_NDIMS]; /* Start point of selection block in dataspace b */
|
|
|
|
|
hsize_t end_a[H5O_LAYOUT_NDIMS]; /* End point of selection block in dataspace a */
|
|
|
|
|
hsize_t end_b[H5O_LAYOUT_NDIMS]; /* End point of selection block in dataspace b */
|
|
|
|
|
hsize_t off_a[H5O_LAYOUT_NDIMS]; /* Offset of selection a blocks */
|
|
|
|
|
hsize_t off_b[H5O_LAYOUT_NDIMS]; /* Offset of selection b blocks */
|
|
|
|
|
hbool_t first_block = TRUE; /* Flag to indicate the first block */
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
|
|
|
|
|
/* Initialize iterator for each dataspace selection
|
|
|
|
|
* Use '0' for element size instead of actual element size to indicate
|
|
|
|
|
* that the selection iterator shouldn't be "flattened", since we
|
|
|
|
|
* aren't actually going to be doing I/O with the iterators.
|
|
|
|
|
*/
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if(H5S_select_iter_init(&iter_a, space_a, (size_t)0) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator a")
|
2014-11-03 15:13:25 -05:00
|
|
|
|
iter_a_init = 1;
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if(H5S_select_iter_init(&iter_b, space_b, (size_t)0) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator b")
|
2014-11-03 15:13:25 -05:00
|
|
|
|
iter_b_init = 1;
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
|
|
|
|
|
/* Iterate over all the blocks in each selection */
|
|
|
|
|
while(1) {
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
int space_a_dim; /* Current dimension in dataspace A */
|
|
|
|
|
int space_b_dim; /* Current dimension in dataspace B */
|
|
|
|
|
htri_t status_a, status_b; /* Status from next block checks */
|
|
|
|
|
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
/* Get the current block for each selection iterator */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if(H5S_SELECT_ITER_BLOCK(&iter_a, start_a, end_a) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "unable to get iterator block a")
|
|
|
|
|
if(H5S_SELECT_ITER_BLOCK(&iter_b, start_b, end_b) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "unable to get iterator block b")
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
space_a_dim = (int)space_a_rank - 1;
|
|
|
|
|
space_b_dim = (int)space_b_rank - 1;
|
|
|
|
|
|
|
|
|
|
/* The first block only compares the sizes and sets the
|
|
|
|
|
* relative offsets for later blocks
|
|
|
|
|
*/
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
if(first_block) {
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
/* If the block sizes in the common dimensions from
|
|
|
|
|
* each selection don't match, get out
|
|
|
|
|
*/
|
|
|
|
|
while(space_b_dim >= 0) {
|
|
|
|
|
if((end_a[space_a_dim] - start_a[space_a_dim]) !=
|
|
|
|
|
(end_b[space_b_dim] - start_b[space_b_dim]))
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
/* Set the relative locations of the selections */
|
|
|
|
|
off_a[space_a_dim] = start_a[space_a_dim];
|
|
|
|
|
off_b[space_b_dim] = start_b[space_b_dim];
|
|
|
|
|
|
|
|
|
|
space_a_dim--;
|
|
|
|
|
space_b_dim--;
|
|
|
|
|
} /* end while */
|
|
|
|
|
|
|
|
|
|
/* similarly, if the block size in any dimension that appears only
|
|
|
|
|
* in space_a is not equal to 1, get out.
|
|
|
|
|
*/
|
|
|
|
|
while(space_a_dim >= 0) {
|
|
|
|
|
if((end_a[space_a_dim] - start_a[space_a_dim]) != 0)
|
|
|
|
|
HGOTO_DONE(FALSE)
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
|
|
|
|
|
/* Set the relative locations of the selections */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
off_a[space_a_dim] = start_a[space_a_dim];
|
|
|
|
|
|
|
|
|
|
space_a_dim--;
|
|
|
|
|
} /* end while */
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
|
|
|
|
|
/* Reset "first block" flag */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
first_block = FALSE;
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
} /* end if */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
/* Check over the blocks for each selection */
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
else {
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
/* for dimensions that space_a and space_b have in common: */
|
|
|
|
|
while(space_b_dim >= 0) {
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
/* Check if the blocks are in the same relative location */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if((start_a[space_a_dim] - off_a[space_a_dim]) !=
|
|
|
|
|
(start_b[space_b_dim] - off_b[space_b_dim]))
|
|
|
|
|
HGOTO_DONE(FALSE)
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
|
|
|
|
|
/* If the block sizes from each selection doesn't match, get out */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if((end_a[space_a_dim] - start_a[space_a_dim]) !=
|
|
|
|
|
(end_b[space_b_dim] - start_b[space_b_dim]))
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
space_a_dim--;
|
|
|
|
|
space_b_dim--;
|
|
|
|
|
} /* end while */
|
|
|
|
|
|
|
|
|
|
/* For dimensions that appear only in space_a: */
|
|
|
|
|
while(space_a_dim >= 0) {
|
|
|
|
|
/* If the block size isn't 1, get out */
|
|
|
|
|
if((end_a[space_a_dim] - start_a[space_a_dim]) != 0)
|
|
|
|
|
HGOTO_DONE(FALSE)
|
|
|
|
|
|
|
|
|
|
space_a_dim--;
|
|
|
|
|
} /* end while */
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
} /* end else */
|
|
|
|
|
|
|
|
|
|
/* Check if we are able to advance to the next selection block */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if((status_a = H5S_SELECT_ITER_HAS_NEXT_BLOCK(&iter_a)) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "unable to check iterator block a")
|
|
|
|
|
|
|
|
|
|
if((status_b = H5S_SELECT_ITER_HAS_NEXT_BLOCK(&iter_b)) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "unable to check iterator block b")
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
|
|
|
|
|
/* Did we run out of blocks at the same time? */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if((status_a == FALSE) && (status_b == FALSE))
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
break;
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
else if(status_a != status_b)
|
|
|
|
|
HGOTO_DONE(FALSE)
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
else {
|
|
|
|
|
/* Advance to next block in selection iterators */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if(H5S_SELECT_ITER_NEXT_BLOCK(&iter_a) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "unable to advance to next iterator block a")
|
|
|
|
|
|
|
|
|
|
if(H5S_SELECT_ITER_NEXT_BLOCK(&iter_b) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTNEXT, FAIL, "unable to advance to next iterator block b")
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
} /* end else */
|
|
|
|
|
} /* end while */
|
|
|
|
|
} /* end else */
|
2003-06-04 10:22:23 -05:00
|
|
|
|
} /* end else */
|
2002-04-03 12:07:14 -05:00
|
|
|
|
|
|
|
|
|
done:
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if(iter_a_init)
|
|
|
|
|
if(H5S_SELECT_ITER_RELEASE(&iter_a) < 0)
|
|
|
|
|
HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator a")
|
|
|
|
|
if(iter_b_init)
|
|
|
|
|
if(H5S_SELECT_ITER_RELEASE(&iter_b) < 0)
|
|
|
|
|
HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator b")
|
|
|
|
|
|
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
|
|
|
|
} /* H5S_select_shape_same() */
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_construct_projection
|
|
|
|
|
|
|
|
|
|
PURPOSE
|
|
|
|
|
Given a dataspace a of rank n with some selection, construct a new
|
|
|
|
|
dataspace b of rank m (m != n), with the selection in a being
|
|
|
|
|
topologically identical to that in b (as verified by
|
|
|
|
|
H5S_select_shape_same().
|
|
|
|
|
|
2014-11-03 15:13:25 -05:00
|
|
|
|
This function exists, as some I/O code chokes of topologically
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
identical selections with different ranks. At least to begin
|
|
|
|
|
with, we will deal with the issue by constructing projections
|
|
|
|
|
of the memory dataspace with ranks equaling those of the file
|
|
|
|
|
dataspace.
|
|
|
|
|
|
|
|
|
|
Note that if m > n, it is possible that the starting point in the
|
|
|
|
|
buffer associated with the memory dataspace will have to be
|
|
|
|
|
adjusted to match the projected dataspace. If the buf parameter
|
|
|
|
|
is not NULL, the function must return an adjusted buffer base
|
|
|
|
|
address in *adj_buf_ptr.
|
|
|
|
|
|
|
|
|
|
USAGE
|
|
|
|
|
htri_t H5S_select_construct_projection(base_space,
|
|
|
|
|
new_space_ptr,
|
|
|
|
|
new_space_rank,
|
|
|
|
|
buf,
|
|
|
|
|
adj_buf_ptr)
|
|
|
|
|
const H5S_t *base_space; IN: Ptr to Dataspace to project
|
|
|
|
|
H5S_t ** new_space_ptr; OUT: Ptr to location in which to return
|
|
|
|
|
the address of the projected space
|
|
|
|
|
int new_space_rank; IN: Rank of the projected space.
|
|
|
|
|
const void * buf; IN: Base address of the buffer
|
|
|
|
|
associated with the base space.
|
|
|
|
|
May be NULL.
|
|
|
|
|
void ** adj_buf_ptr; OUT: If buf != NULL, store the base
|
|
|
|
|
address of the section of buf
|
|
|
|
|
that is described by *new_space_ptr
|
|
|
|
|
in *adj_buf_ptr.
|
|
|
|
|
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success/Negative on failure.
|
|
|
|
|
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Construct a new dataspace and associated selection which is a
|
|
|
|
|
projection of the supplied dataspace and associated selection into
|
|
|
|
|
the specified rank. Return it in *new_space_ptr.
|
|
|
|
|
|
|
|
|
|
If buf is supplied, computes the base address of the projected
|
|
|
|
|
selection in buf, and stores the base address in *adj_buf_ptr.
|
|
|
|
|
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
The selection in the supplied base_space has thickness 1 in all
|
|
|
|
|
dimensions greater than new_space_rank. Note that here we count
|
|
|
|
|
dimensions from the fastest changing coordinate to the slowest
|
|
|
|
|
changing changing coordinate.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_construct_projection(const H5S_t *base_space, H5S_t **new_space_ptr,
|
2010-07-19 12:53:10 -05:00
|
|
|
|
unsigned new_space_rank, const void *buf, void const **adj_buf_ptr, hsize_t element_size)
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
{
|
|
|
|
|
H5S_t * new_space = NULL; /* New dataspace constructed */
|
|
|
|
|
hsize_t base_space_dims[H5S_MAX_RANK]; /* Current dimensions of base dataspace */
|
|
|
|
|
hsize_t base_space_maxdims[H5S_MAX_RANK]; /* Maximum dimensions of base dataspace */
|
|
|
|
|
int sbase_space_rank; /* Signed # of dimensions of base dataspace */
|
|
|
|
|
unsigned base_space_rank; /* # of dimensions of base dataspace */
|
|
|
|
|
hsize_t projected_space_element_offset = 0; /* Offset of selected element in projected buffer */
|
|
|
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
|
|
|
|
|
/* Sanity checks */
|
|
|
|
|
HDassert(base_space != NULL);
|
|
|
|
|
HDassert((H5S_GET_EXTENT_TYPE(base_space) == H5S_SCALAR) || (H5S_GET_EXTENT_TYPE(base_space) == H5S_SIMPLE));
|
|
|
|
|
HDassert(new_space_ptr != NULL);
|
|
|
|
|
HDassert((new_space_rank != 0) || (H5S_GET_SELECT_NPOINTS(base_space) <= 1));
|
|
|
|
|
HDassert(new_space_rank <= H5S_MAX_RANK);
|
|
|
|
|
HDassert((buf == NULL) || (adj_buf_ptr != NULL));
|
|
|
|
|
HDassert(element_size > 0 );
|
|
|
|
|
|
|
|
|
|
/* Get the extent info for the base dataspace */
|
|
|
|
|
if((sbase_space_rank = H5S_get_simple_extent_dims(base_space, base_space_dims, base_space_maxdims)) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "unable to get dimensionality of base space")
|
|
|
|
|
base_space_rank = (unsigned)sbase_space_rank;
|
|
|
|
|
HDassert(base_space_rank != new_space_rank);
|
|
|
|
|
|
|
|
|
|
/* Check if projected space is scalar */
|
|
|
|
|
if(new_space_rank == 0) {
|
|
|
|
|
hssize_t npoints; /* Number of points selected */
|
|
|
|
|
|
|
|
|
|
/* Retreve the number of elements selected */
|
|
|
|
|
if((npoints = (hssize_t)H5S_GET_SELECT_NPOINTS(base_space)) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTGET, FAIL, "unable to get number of points selected")
|
|
|
|
|
HDassert(npoints <= 1);
|
|
|
|
|
|
|
|
|
|
/* Create new scalar dataspace */
|
|
|
|
|
if(NULL == (new_space = H5S_create(H5S_SCALAR)))
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create scalar dataspace")
|
|
|
|
|
|
|
|
|
|
/* No need to register the dataspace(i.e. get an ID) as
|
|
|
|
|
* we will just be discarding it shortly.
|
|
|
|
|
*/
|
|
|
|
|
|
|
|
|
|
/* Selection for the new space will be either all or
|
|
|
|
|
* none, depending on whether the base space has 0 or
|
|
|
|
|
* 1 elements selected.
|
|
|
|
|
*
|
|
|
|
|
* Observe that the base space can't have more than
|
|
|
|
|
* one selected element, since its selection has the
|
|
|
|
|
* same shape as the file dataspace, and that data
|
|
|
|
|
* space is scalar.
|
|
|
|
|
*/
|
|
|
|
|
if(1 == npoints) {
|
|
|
|
|
/* Assuming that the selection in the base dataspace is not
|
|
|
|
|
* empty, we must compute the offset of the selected item in
|
|
|
|
|
* the buffer associated with the base dataspace.
|
|
|
|
|
*
|
|
|
|
|
* Since the new space rank is zero, we know that the
|
|
|
|
|
* the base space must have rank at least 1 -- and
|
|
|
|
|
* hence it is a simple dataspace. However, the
|
|
|
|
|
* selection, may be either point, hyperspace, or all.
|
|
|
|
|
*
|
|
|
|
|
*/
|
|
|
|
|
if(H5S_SELECT_PROJECT_SCALAR(base_space, &projected_space_element_offset) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "unable to project scalar selection")
|
|
|
|
|
} /* end if */
|
|
|
|
|
else {
|
|
|
|
|
HDassert(0 == npoints);
|
|
|
|
|
|
|
|
|
|
if(H5S_select_none(new_space) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't delete default selection")
|
|
|
|
|
} /* end else */
|
|
|
|
|
} /* end if */
|
|
|
|
|
else { /* projected space must be simple */
|
|
|
|
|
hsize_t new_space_dims[H5S_MAX_RANK]; /* Current dimensions for new dataspace */
|
|
|
|
|
hsize_t new_space_maxdims[H5S_MAX_RANK];/* Maximum dimensions for new dataspace */
|
|
|
|
|
unsigned rank_diff; /* Difference in ranks */
|
|
|
|
|
|
|
|
|
|
/* Set up the dimensions of the new, projected dataspace.
|
|
|
|
|
*
|
|
|
|
|
* How we do this depends on whether we are projecting up into
|
|
|
|
|
* increased dimensions, or down into a reduced number of
|
|
|
|
|
* dimensions.
|
|
|
|
|
*
|
|
|
|
|
* If we are projecting up (the first half of the following
|
|
|
|
|
* if statement), we copy the dimensions of the base data
|
|
|
|
|
* space into the fastest changing dimensions of the new
|
|
|
|
|
* projected dataspace, and set the remaining dimensions to
|
|
|
|
|
* one.
|
|
|
|
|
*
|
|
|
|
|
* If we are projecting down (the second half of the following
|
|
|
|
|
* if statement), we just copy the dimensions with the most
|
|
|
|
|
* quickly changing dimensions into the dims for the projected
|
|
|
|
|
* data set.
|
|
|
|
|
*
|
|
|
|
|
* This works, because H5S_select_shape_same() will return
|
|
|
|
|
* true on selections of different rank iff:
|
|
|
|
|
*
|
|
|
|
|
* 1) the selection in the lower rank dataspace matches that
|
|
|
|
|
* in the dimensions with the fastest changing indicies in
|
|
|
|
|
* the larger rank dataspace, and
|
|
|
|
|
*
|
|
|
|
|
* 2) the selection has thickness 1 in all ranks that appear
|
|
|
|
|
* only in the higher rank dataspace (i.e. those with
|
|
|
|
|
* more slowly changing indicies).
|
|
|
|
|
*/
|
|
|
|
|
if(new_space_rank > base_space_rank) {
|
|
|
|
|
hsize_t tmp_dim_size = 1; /* Temporary dimension value, for filling arrays */
|
|
|
|
|
|
|
|
|
|
/* we must copy the dimensions of the base space into
|
|
|
|
|
* the fastest changing dimensions of the new space,
|
|
|
|
|
* and set the remaining dimensions to 1
|
|
|
|
|
*/
|
|
|
|
|
rank_diff = new_space_rank - base_space_rank;
|
2014-02-13 17:12:46 -05:00
|
|
|
|
H5VM_array_fill(new_space_dims, &tmp_dim_size, sizeof(tmp_dim_size), rank_diff);
|
|
|
|
|
H5VM_array_fill(new_space_maxdims, &tmp_dim_size, sizeof(tmp_dim_size), rank_diff);
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
HDmemcpy(&new_space_dims[rank_diff], base_space_dims, sizeof(new_space_dims[0]) * base_space_rank);
|
|
|
|
|
HDmemcpy(&new_space_maxdims[rank_diff], base_space_maxdims, sizeof(new_space_maxdims[0]) * base_space_rank);
|
|
|
|
|
} /* end if */
|
|
|
|
|
else { /* new_space_rank < base_space_rank */
|
|
|
|
|
/* we must copy the fastest changing dimension of the
|
|
|
|
|
* base space into the dimensions of the new space.
|
|
|
|
|
*/
|
|
|
|
|
rank_diff = base_space_rank - new_space_rank;
|
|
|
|
|
HDmemcpy(new_space_dims, &base_space_dims[rank_diff], sizeof(new_space_dims[0]) * new_space_rank);
|
|
|
|
|
HDmemcpy(new_space_maxdims, &base_space_maxdims[rank_diff], sizeof(new_space_maxdims[0]) * new_space_rank);
|
|
|
|
|
} /* end else */
|
|
|
|
|
|
|
|
|
|
/* now have the new space rank and dimensions set up --
|
|
|
|
|
* so we can create the new simple dataspace.
|
|
|
|
|
*/
|
|
|
|
|
if(NULL == (new_space = H5S_create_simple(new_space_rank, new_space_dims, new_space_maxdims)))
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "can't create simple dataspace")
|
|
|
|
|
|
|
|
|
|
/* No need to register the dataspace(i.e. get an ID) as
|
|
|
|
|
* we will just be discarding it shortly.
|
|
|
|
|
*/
|
|
|
|
|
|
|
|
|
|
/* If we get this far, we have successfully created the projected
|
|
|
|
|
* dataspace. We must now project the selection in the base
|
|
|
|
|
* dataspace into the projected dataspace.
|
|
|
|
|
*/
|
|
|
|
|
if(H5S_SELECT_PROJECT_SIMPLE(base_space, new_space, &projected_space_element_offset) < 0)
|
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "unable to project simple selection")
|
|
|
|
|
|
|
|
|
|
/* If we get this far, we have created the new dataspace, and projected
|
|
|
|
|
* the selection in the base dataspace into the new dataspace.
|
|
|
|
|
*
|
|
|
|
|
* If the base dataspace is simple, check to see if the
|
|
|
|
|
* offset_changed flag on the base selection has been set -- if so,
|
|
|
|
|
* project the offset into the new dataspace and set the
|
|
|
|
|
* offset_changed flag.
|
|
|
|
|
*/
|
|
|
|
|
if(H5S_GET_EXTENT_TYPE(base_space) == H5S_SIMPLE && base_space->select.offset_changed) {
|
|
|
|
|
if(new_space_rank > base_space_rank) {
|
|
|
|
|
HDmemset(new_space->select.offset, 0, sizeof(new_space->select.offset[0]) * rank_diff);
|
|
|
|
|
HDmemcpy(&new_space->select.offset[rank_diff], base_space->select.offset, sizeof(new_space->select.offset[0]) * base_space_rank);
|
|
|
|
|
} /* end if */
|
|
|
|
|
else
|
|
|
|
|
HDmemcpy(new_space->select.offset, &base_space->select.offset[rank_diff], sizeof(new_space->select.offset[0]) * new_space_rank);
|
|
|
|
|
|
|
|
|
|
/* Propagate the offset changed flag into the new dataspace. */
|
|
|
|
|
new_space->select.offset_changed = TRUE;
|
|
|
|
|
} /* end if */
|
|
|
|
|
} /* end else */
|
|
|
|
|
|
|
|
|
|
/* If we have done the projection correctly, the following assertion
|
|
|
|
|
* should hold.
|
|
|
|
|
*/
|
|
|
|
|
HDassert(TRUE == H5S_select_shape_same(base_space, new_space));
|
|
|
|
|
|
|
|
|
|
/* load the address of the new space into *new_space_ptr */
|
|
|
|
|
*new_space_ptr = new_space;
|
|
|
|
|
|
|
|
|
|
/* now adjust the buffer if required */
|
|
|
|
|
if(buf != NULL) {
|
|
|
|
|
if(new_space_rank < base_space_rank) {
|
|
|
|
|
/* a bit of pointer magic here:
|
|
|
|
|
*
|
|
|
|
|
* Since we can't do pointer arithmetic on void pointers, we first
|
|
|
|
|
* cast buf to a pointer to byte -- i.e. uint8_t.
|
|
|
|
|
*
|
|
|
|
|
* We then multiply the projected space element offset we
|
|
|
|
|
* calculated earlier by the supplied element size, add this
|
|
|
|
|
* value to the type cast buf pointer, cast the result back
|
|
|
|
|
* to a pointer to void, and assign the result to *adj_buf_ptr.
|
|
|
|
|
*/
|
2010-07-19 12:53:10 -05:00
|
|
|
|
*adj_buf_ptr = (const void *)(((const uint8_t *)buf) +
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
((size_t)(projected_space_element_offset * element_size)));
|
|
|
|
|
} /* end if */
|
|
|
|
|
else
|
|
|
|
|
/* No adjustment necessary */
|
|
|
|
|
*adj_buf_ptr = buf;
|
2003-06-04 10:22:23 -05:00
|
|
|
|
} /* end if */
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
|
|
|
|
|
done:
|
|
|
|
|
/* Cleanup on error */
|
2014-11-03 15:13:25 -05:00
|
|
|
|
if(ret_value < 0) {
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
if(new_space && H5S_close(new_space) < 0)
|
|
|
|
|
HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace")
|
2014-11-03 15:13:25 -05:00
|
|
|
|
} /* end if */
|
2004-09-29 22:46:58 -05:00
|
|
|
|
|
[svn-r14249] Description:
- Changed H5S_select_shape_same routine to handle scalar dataspace
comparisons correctly. (Added regression tests to verify)
- Simplified chunk map creation, now that scalar dataspaces are handled
in same way as "simple" dataspaces.
Tested on:
FreeBSD/32 6.2 (duty) in debug mode
FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Mac OS X/32 10.4.10 (amazon) in debug mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-10 16:07:53 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
} /* H5S_select_construct_projection() */
|
2002-04-03 12:07:14 -05:00
|
|
|
|
|
2002-04-09 07:47:34 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_fill
|
|
|
|
|
PURPOSE
|
|
|
|
|
Fill a selection in memory with a value
|
|
|
|
|
USAGE
|
|
|
|
|
herr_t H5S_select_fill(fill,fill_size,space,buf)
|
|
|
|
|
const void *fill; IN: Pointer to fill value to use
|
|
|
|
|
size_t fill_size; IN: Size of elements in memory buffer & size of
|
|
|
|
|
fill value
|
|
|
|
|
H5S_t *space; IN: Dataspace describing memory buffer &
|
|
|
|
|
containing selection to use.
|
|
|
|
|
void *buf; IN/OUT: Memory buffer to fill selection in
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success/Negative on failure.
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
Use the selection in the dataspace to fill elements in a memory buffer.
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
The memory buffer elements are assumed to have the same datatype as the
|
|
|
|
|
fill value being placed into them.
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
2007-07-10 15:07:58 -05:00
|
|
|
|
H5S_select_fill(const void *fill, size_t fill_size, const H5S_t *space, void *_buf)
|
2002-04-09 07:47:34 -05:00
|
|
|
|
{
|
[svn-r6252] Purpose:
Lots of performance improvements & a couple new internal API interfaces.
Description:
Performance Improvements:
- Cached file offset & length sizes in shared file struct, to avoid
constantly looking them up in the FCPL.
- Generic property improvements:
- Added "revision" number to generic property classes to speed
up comparisons.
- Changed method of storing properties from using a hash-table
to the TBBT routines in the library.
- Share the propery names between classes and the lists derived
from them.
- Removed redundant 'def_value' buffer from each property.
- Switching code to use a "copy on write" strategy for
properties in each list, where the properties in each list
are shared with the properties in the class, until a
property's value is changed in a list.
- Fixed error in layout code which was allocating too many buffers.
- Redefined public macros of the form (H5open()/H5check, <variable>)
internally to only be (<variable>), avoiding innumerable useless
calls to H5open() and H5check_version().
- Reuse already zeroed buffers in H5F_contig_fill instead of
constantly re-zeroing them.
- Don't write fill values if writing entire dataset.
- Use gettimeofday() system call instead of time() system when
checking the modification time of a dataset.
- Added reference counted string API and use it for tracking the
names of objects opening in a file (for the ID->name code).
- Removed redundant H5P_get() calls in B-tree routines.
- Redefine H5T datatype macros internally to the library, to avoid
calling H5check redundantly.
- Keep dataspace information for dataset locally instead of reading
from disk each time. Added new module to track open objects
in a file, to allow this (which will be useful eventually for
some FPH5 metadata caching issues).
- Remove H5AC_find macro which was inlining metadata cache lookups,
and call function instead.
- Remove redundant memset() calls from H5G_namei() routine.
- Remove redundant checking of object type when locating objects
in metadata cache and rely on the address only.
- Create default dataset object to use when default dataset creation
property list is used to create datasets, bypassing querying
for all the property list values.
- Use default I/O vector size when performing raw data with the
default dataset transfer property list, instead of querying for
I/O vector size.
- Remove H5P_DEFAULT internally to the library, replacing it with
more specific default property list based on the type of
property list needed.
- Remove redundant memset() calls in object header message (H5O*)
routines.
- Remove redunant memset() calls in data I/O routines.
- Split free-list allocation routines into malloc() and calloc()-
like routines, instead of one combined routine.
- Remove lots of indirection in H5O*() routines.
- Simplify metadata cache entry comparison routine (used when
flushing entire cache out).
- Only enable metadata cache statistics when H5AC_DEBUG is turned
on, instead of always tracking them.
- Simplify address comparison macro (H5F_addr_eq).
- Remove redundant metadata cache entry protections during dataset
creation by protecting the object header once and making all
the modifications necessary for the dataset creation before
unprotecting it.
- Reduce # of "number of element in extent" computations performed
by computing and storing the value during dataspace creation.
- Simplify checking for group location's file information, when file
has not been involving in file-mounting operations.
- Use binary encoding for modification time, instead of ASCII.
- Hoist H5HL_peek calls (to get information in a local heap)
out of loops in many group routine.
- Use static variable for iterators of selections, instead of
dynamically allocation them each time.
- Lookup & insert new entries in one step, avoiding traversing
group's B-tree twice.
- Fixed memory leak in H5Gget_objname_idx() routine (tangential to
performance improvements, but fixed along the way).
- Use free-list for reference counted strings.
- Don't bother copying object names into cached group entries,
since they are re-created when an object is opened.
The benchmark I used to measure these results created several thousand
small (2K) datasets in a file and wrote out the data for them. This is
Elena's "regular.c" benchmark.
These changes resulted in approximately ~4.3x speedup of the
development branch when compared to the previous code in the
development branch and ~1.4x speedup compared to the release
branch.
Additionally, these changes reduce the total memory used (code and
data) by the development branch by ~800KB, bringing the development
branch back into the same ballpark as the release branch.
I'll send out a more detailed description of the benchmark results
as a followup note.
New internal API routines:
Added "reference counted strings" API for tracking strings that get
used by multiple owners without duplicating the strings.
Added "ternary search tree" API for text->object mappings.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
Other platforms/configurations tested?
FreeBSD 4.7 (sleipnir) serial & parallel
Solaris 2.6 (baldric) serial
2003-01-09 12:20:03 -05:00
|
|
|
|
H5S_sel_iter_t iter; /* Selection iteration info */
|
2007-06-28 22:12:45 -05:00
|
|
|
|
hbool_t iter_init = 0; /* Selection iteration info has been initialized */
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
hssize_t nelmts; /* Number of elements in selection */
|
2004-05-01 11:10:17 -05:00
|
|
|
|
size_t max_elem; /* Total number of elements in selection */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
herr_t ret_value = SUCCEED; /* Return value */
|
2002-04-09 07:47:34 -05:00
|
|
|
|
|
2012-02-08 22:13:27 -05:00
|
|
|
|
FUNC_ENTER_NOAPI(FAIL)
|
2002-04-09 07:47:34 -05:00
|
|
|
|
|
|
|
|
|
/* Check args */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
HDassert(fill);
|
|
|
|
|
HDassert(fill_size > 0);
|
|
|
|
|
HDassert(space);
|
|
|
|
|
HDassert(_buf);
|
2002-04-25 08:15:22 -05:00
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Initialize iterator */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
if(H5S_select_iter_init(&iter, space, fill_size) < 0)
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator")
|
2007-07-10 15:07:58 -05:00
|
|
|
|
iter_init = 1; /* Selection iteration info has been initialized */
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Get the number of elements in selection */
|
2009-01-08 12:27:15 -05:00
|
|
|
|
if((nelmts = (hssize_t)H5S_GET_SELECT_NPOINTS(space)) < 0)
|
2007-07-10 15:07:58 -05:00
|
|
|
|
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOUNT, FAIL, "can't get number of elements selected")
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Compute the number of bytes to process */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
H5_ASSIGN_OVERFLOW(max_elem, nelmts, hssize_t, size_t);
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Loop, while elements left in selection */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
while(max_elem > 0) {
|
|
|
|
|
hsize_t off[H5D_IO_VECTOR_SIZE]; /* Array to store sequence offsets */
|
|
|
|
|
size_t len[H5D_IO_VECTOR_SIZE]; /* Array to store sequence lengths */
|
|
|
|
|
size_t nseq; /* Number of sequences generated */
|
|
|
|
|
size_t curr_seq; /* Current sequnce being worked on */
|
|
|
|
|
size_t nelem; /* Number of elements used in sequences */
|
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Get the sequences of bytes */
|
2006-11-01 23:54:19 -05:00
|
|
|
|
if(H5S_SELECT_GET_SEQ_LIST(space, 0, &iter, (size_t)H5D_IO_VECTOR_SIZE, max_elem, &nseq, &nelem, off, len) < 0)
|
[svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk. These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.
These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.
Many other misc. code cleanup are included as well...
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
2010-07-19 00:05:45 -05:00
|
|
|
|
HGOTO_ERROR(H5E_INTERNAL, H5E_UNSUPPORTED, FAIL, "sequence length generation failed")
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Loop over sequences */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
for(curr_seq = 0; curr_seq < nseq; curr_seq++) {
|
|
|
|
|
uint8_t *buf; /* Current location in buffer */
|
|
|
|
|
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
/* Get offset in memory buffer */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
buf = (uint8_t *)_buf + off[curr_seq];
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
|
|
|
|
/* Fill each sequence in memory with fill value */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
HDassert((len[curr_seq] % fill_size) == 0);
|
2014-02-13 17:12:46 -05:00
|
|
|
|
H5VM_array_fill(buf, fill, fill_size, (len[curr_seq] / fill_size));
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
} /* end for */
|
|
|
|
|
|
2004-05-01 11:10:17 -05:00
|
|
|
|
/* Decrement number of elements left to process */
|
2007-07-10 15:07:58 -05:00
|
|
|
|
max_elem -= nelem;
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
} /* end while */
|
|
|
|
|
|
|
|
|
|
done:
|
2007-06-28 22:12:45 -05:00
|
|
|
|
/* Release resouces */
|
|
|
|
|
if(iter_init && H5S_SELECT_ITER_RELEASE(&iter) < 0)
|
2007-07-10 15:07:58 -05:00
|
|
|
|
HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator")
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
|
2007-07-10 15:07:58 -05:00
|
|
|
|
FUNC_LEAVE_NOAPI(ret_value)
|
[svn-r5834] Purpose:
Large code cleanup/re-write
Description:
This is phase 1 of the data I/O re-architecture, with the following changes:
- Changed the selection drivers to not actually do any I/O, they
only generate the sequences of offset/length pairs needed for
the I/O (or memory access, in the case of iterating or filling
a selection in a memory buffer)
- Wrote more abstract I/O routines which get the sequence of offset/
length pairs for each selection and access perform the I/O or
memory access.
Benefits of this change include:
- Removed ~3400 lines of quite redundant code, with corresponding
reduction in the size of library binary.
- Any selection can now directly access memory when performing I/O,
if no type conversions are required, instead of just "regular"
hyperslab and 'all' selections, which speeds up I/O.
- Sped up I/O for hyperslab selections which have contiguous lower
dimensions by "flattening" them out into lesser dimensional objects
for the I/O.
No file format or API changes were necessary for this change.
The next phase will be to create a "selection driver" for each type of
selection, allowing each type of selection to directly call certain
methods that only apply to that type of selection, instead of passing
through dozens of functions which have switch statements to call the
appropriate method for each selection type. This will also reduce
the amount of code in the library and speed things up a bit more.
Phase 3 will involve generating an MPI datatype for all types of selections,
instead of only "regular" hyperslab and 'all' selections. This will
allow collective parallel I/O for all I/O operations which don't
require type conversions. It will also open up the door for allowing
collective I/O on datasets which require type conversion.
Phase 4 will involve changing the access pattern to deal with chunked
datasets in a more optimal way (in serial).
Phase 5 will deal with accessing chunked datasets more optimally for
collective parallel I/O operations.
Platforms tested:
FreeBSD 4.6 (sleipnir) w/ parallel & C++ and IRIX64 6.5 (modi4) w/parallel
2002-07-24 13:56:48 -05:00
|
|
|
|
} /* H5S_select_fill() */
|
|
|
|
|
|
2015-03-09 16:59:50 -05:00
|
|
|
|
|
|
|
|
|
/*--------------------------------------------------------------------------
|
|
|
|
|
NAME
|
|
|
|
|
H5S_select_project_intersection
|
|
|
|
|
|
|
|
|
|
PURPOSE
|
|
|
|
|
VDSINC
|
|
|
|
|
|
|
|
|
|
USAGE
|
|
|
|
|
VDSINC
|
|
|
|
|
|
|
|
|
|
RETURNS
|
|
|
|
|
Non-negative on success/Negative on failure.
|
|
|
|
|
|
|
|
|
|
DESCRIPTION
|
|
|
|
|
VDSINC
|
|
|
|
|
|
|
|
|
|
GLOBAL VARIABLES
|
|
|
|
|
COMMENTS, BUGS, ASSUMPTIONS
|
|
|
|
|
EXAMPLES
|
|
|
|
|
REVISION LOG
|
|
|
|
|
--------------------------------------------------------------------------*/
|
|
|
|
|
herr_t
|
|
|
|
|
H5S_select_project_intersection(const H5S_t *src_space, const H5S_t *dst_space,
|
|
|
|
|
const H5S_t *src_intersect_space, H5S_t **new_space_ptr)
|
|
|
|
|
{
|
|
|
|
|
H5S_t *new_space = NULL; /* New dataspace constructed */
|
|
|
|
|
herr_t ret_value = SUCCEED; /* Return value */
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FUNC_ENTER_NOAPI(FAIL)
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/* Sanity checks */
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HDassert(src_space);
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HDassert(dst_space);
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HDassert(src_intersect_space);
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HDassert(new_space_ptr);
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2015-03-17 15:02:05 -05:00
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/* Create new space, using dst extent. Start with "all" selection. */
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2015-03-09 16:59:50 -05:00
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if(NULL == (new_space = H5S_create(H5S_SIMPLE)))
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HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL, "unable to create output dataspace")
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if(H5S_extent_copy_real(&new_space->extent, &dst_space->extent, TRUE) < 0)
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HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "unable to copy destination space extent")
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2015-03-17 15:02:05 -05:00
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/* If the intersecting space is "all", the intersection must be equal to the
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* source space and the projection must be equal to the destination space */
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if(src_intersect_space->select.type->type == H5S_SEL_ALL) {
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/* Copy the destination selection. */
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if(H5S_select_copy(new_space, dst_space, FALSE) < 0)
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HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCOPY, FAIL, "can't copy destination space selection")
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} /* end if */
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/* If any of the spaces are "none", the projection must also be "none" */
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else if((src_intersect_space->select.type->type == H5S_SEL_NONE)
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|| (src_space->select.type->type == H5S_SEL_NONE)
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|| (dst_space->select.type->type == H5S_SEL_NONE)) {
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/* Change to "none" selection */
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if(H5S_select_none(new_space) < 0)
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HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL, "can't change selection")
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} /* end if */
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/* If any of the spaces use point selection, fall back to general algorithm
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*/
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else if((src_intersect_space->select.type->type == H5S_SEL_POINTS)
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|| (src_space->select.type->type == H5S_SEL_POINTS)
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|| (dst_space->select.type->type == H5S_SEL_POINTS)) {
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HDassert(0 && "Not yet implemented...");//VDSINC
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else {
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HDassert(src_intersect_space->select.type->type == H5S_SEL_HYPERSLABS);
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/* Intersecting space is hyperslab selection. If source space is set to
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* all, use simpler algorithm, otherwise use general hyperslab algorithm
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* (in either case if the destination space is al; the hyperslab
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* routines will convert the destination selection to a span tree to use
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* the same algorithm as with hyperslabs). */
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if(dst_space->select.type->type == H5S_SEL_ALL) {
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HDassert(0 && "Checking code coverage...");//VDSINC
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/* Project src_intersect_space onto dst_space selection */
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if(H5S_hyper_project_to_hs(src_intersect_space, dst_space, new_space) < 0)
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HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCLIP, FAIL, "can't project hyperslab ondot destination selection")
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} /* end if */
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else {
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HDassert(dst_space->select.type->type == H5S_SEL_HYPERSLABS);
|
2015-03-09 16:59:50 -05:00
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HDassert(0 && "Not yet implemented...");//VDSINC
|
2015-03-17 15:02:05 -05:00
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} /* end else */
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} /* end else */
|
2015-03-09 16:59:50 -05:00
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/* load the address of the new space into *new_space_ptr */
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*new_space_ptr = new_space;
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done:
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/* Cleanup on error */
|
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if(ret_value < 0) {
|
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if(new_space && H5S_close(new_space) < 0)
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HDONE_ERROR(H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release dataspace")
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} /* end if */
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FUNC_LEAVE_NOAPI(ret_value)
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} /* H5S_select_project_intersection() */
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