2018-01-06 00:09:10 +08:00
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HDF5 version 1.11.2 currently under development
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2009-01-06 22:58:21 +08:00
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================================================================================
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INTRODUCTION
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2018-04-04 05:57:26 +08:00
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This document describes the differences between this release and the previous
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HDF5 release. It contains information on the platforms tested and known
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problems in this release. For more details check the HISTORY*.txt files in the
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HDF5 source.
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2009-01-06 22:58:21 +08:00
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2018-04-04 05:57:26 +08:00
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Note that documentation in the links below will be updated at the time of each
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final release.
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2009-01-06 22:58:21 +08:00
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2018-04-04 05:57:26 +08:00
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Links to HDF5 documentation can be found on The HDF5 web page:
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2017-02-01 06:05:20 +08:00
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2018-04-04 05:57:26 +08:00
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https://portal.hdfgroup.org/display/HDF5/HDF5
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2017-03-21 02:32:26 +08:00
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2018-04-04 05:57:26 +08:00
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The official HDF5 releases can be obtained from:
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2017-02-01 06:05:20 +08:00
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2018-04-04 05:57:26 +08:00
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https://www.hdfgroup.org/downloads/hdf5/
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2017-03-21 02:32:26 +08:00
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2018-04-04 05:57:26 +08:00
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Changes from Release to Release and New Features in the HDF5-1.10.x release series
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can be found at:
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2009-01-06 22:58:21 +08:00
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2018-04-04 05:57:26 +08:00
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https://portal.hdfgroup.org/display/HDF5/HDF5+Application+Developer%27s+Guide
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2009-01-06 22:58:21 +08:00
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If you have any questions or comments, please send them to the HDF Help Desk:
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2018-04-04 05:57:26 +08:00
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help@hdfgroup.org
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2009-01-06 22:58:21 +08:00
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CONTENTS
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- New Features
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- Support for new platforms and languages
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2018-04-04 05:57:26 +08:00
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- Bug Fixes since HDF5-1.10.2
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2012-11-15 02:10:03 +08:00
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- Supported Platforms
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- Tested Configuration Features Summary
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- More Tested Platforms
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2009-01-06 22:58:21 +08:00
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- Known Problems
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New Features
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============
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Configuration:
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-------------
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2018-05-09 04:17:43 +08:00
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-
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2009-01-06 22:58:21 +08:00
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Library:
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--------
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2018-05-09 04:17:43 +08:00
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-
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2017-12-29 06:49:50 +08:00
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2017-04-04 23:07:41 +08:00
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2009-01-06 22:58:21 +08:00
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Parallel Library:
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-----------------
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2018-05-09 04:17:43 +08:00
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-
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2009-01-06 22:58:21 +08:00
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Fortran Library:
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----------------
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2017-03-21 02:32:26 +08:00
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-
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2016-03-07 02:15:05 +08:00
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2009-01-06 22:58:21 +08:00
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C++ Library:
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------------
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2018-04-04 05:57:26 +08:00
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-
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2015-08-28 05:46:50 +08:00
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2017-12-29 06:49:50 +08:00
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Java Library:
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----------------
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2018-04-04 05:57:26 +08:00
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-
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2017-12-29 06:49:50 +08:00
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2016-03-07 02:15:05 +08:00
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Tools:
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------
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2018-04-04 05:57:26 +08:00
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-
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2017-09-01 04:58:37 +08:00
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2009-01-06 22:58:21 +08:00
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High-Level APIs:
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2016-03-09 21:56:58 +08:00
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---------------
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2017-05-18 22:12:47 +08:00
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-
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2016-03-09 21:56:58 +08:00
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2017-02-01 06:05:20 +08:00
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C Packet Table API
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------------------
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2017-05-18 22:12:47 +08:00
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-
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2016-03-07 02:15:05 +08:00
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2017-02-01 06:05:20 +08:00
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Internal header file
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--------------------
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-
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2017-03-21 02:32:26 +08:00
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2016-03-08 00:01:53 +08:00
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Documentation
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-------------
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2017-05-05 06:14:38 +08:00
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2009-01-06 22:58:21 +08:00
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Support for new platforms, languages and compilers.
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=======================================
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2017-03-21 02:32:26 +08:00
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-
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2009-01-06 22:58:21 +08:00
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2018-04-04 05:57:26 +08:00
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Bug Fixes since HDF5-1.10.2 release
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2009-01-06 22:58:21 +08:00
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==================================
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Library
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-------
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2018-03-14 01:10:14 +08:00
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- If an HDF5 file contains a malformed compound datatype with a
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suitably large offset, the type conversion code can run off
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the end of the type conversion buffer, causing a segmentation
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fault.
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This issue was reported to The HDF Group as issue #CVE-2017-17507.
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NOTE: The HDF5 C library cannot produce such a file. This condition
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should only occur in a corrupt (or deliberately altered) file
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or a file created by third-party software.
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THE HDF GROUP WILL NOT FIX THIS BUG AT THIS TIME
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Fixing this problem would involve updating the publicly visible
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H5T_conv_t function pointer typedef and versioning the API calls
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which use it. We normally only modify the public API during
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major releases, so this bug will not be fixed at this time.
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(DER - 2018/02/26, HDFFV-10356)
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2018-03-13 08:56:54 +08:00
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2009-01-06 22:58:21 +08:00
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Configuration
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-------------
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2018-05-17 01:15:02 +08:00
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Reworked java test suite into individual JUnit tests.
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Testing the whole suite of java unit tests in a single JUnit run
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made it difficult to determine actual failures when tests would fail.
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Running each file set of tests individually, allows individual failures
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to be diagnosed easier. A side benifit is that tests for optional components
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of the library can be disabled if not configured.
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(ADB 2018/05/16, HDFFV-9739)
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2018-05-09 04:17:43 +08:00
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- Converted CMake global commands ADD_DEFINITIONS and INCLUDE_DIRECTORIES
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to use target_* type commands. This change modernizes the CMake usage
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in the HDF5 library.
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In addition, there is the intention to convert to generator expressions,
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where possible. The exception is Fortran FLAGS on Windows Visual Studio.
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2018-05-09 04:23:41 +08:00
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The HDF macros TARGET_C_PROPERTIES and TARGET_FORTRAN_PROPERTIES have
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2018-05-09 04:17:43 +08:00
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been removed with this change in usage.
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The additional language (C++ and Fortran) checks have also been localized
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to only be checked when that language is enabled.
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(ADB 2018/05/08)
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2009-01-06 22:58:21 +08:00
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Performance
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-------------
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2017-05-05 06:14:38 +08:00
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-
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2017-03-21 02:32:26 +08:00
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2012-06-24 07:31:40 +08:00
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Fortran
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--------
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2018-04-04 05:57:26 +08:00
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-
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2016-03-05 04:49:15 +08:00
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2016-03-07 02:15:05 +08:00
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Tools
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-----
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2018-04-04 05:57:26 +08:00
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-
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2017-04-04 00:33:01 +08:00
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2009-04-09 05:22:13 +08:00
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High-Level APIs:
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2017-02-01 06:05:20 +08:00
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------
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2017-03-21 02:32:26 +08:00
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-
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2016-03-05 03:50:52 +08:00
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2016-03-07 02:15:05 +08:00
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Fortran High-Level APIs:
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2017-02-01 06:05:20 +08:00
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------
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2017-03-21 02:32:26 +08:00
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-
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2016-03-07 02:15:05 +08:00
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2016-03-08 00:01:53 +08:00
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Documentation
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-------------
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2017-05-05 06:14:38 +08:00
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-
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2009-01-06 22:58:21 +08:00
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F90 APIs
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--------
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2017-03-21 02:32:26 +08:00
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2016-03-08 00:01:53 +08:00
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2009-01-06 22:58:21 +08:00
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C++ APIs
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--------
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2018-04-04 05:57:26 +08:00
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-
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2017-03-21 07:36:37 +08:00
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2013-02-14 00:03:49 +08:00
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Testing
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-------
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2009-01-06 22:58:21 +08:00
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2012-11-15 02:10:03 +08:00
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Supported Platforms
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===================
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2017-03-21 02:32:26 +08:00
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2018-04-04 05:57:26 +08:00
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Linux 2.6.32-696.16.1.el6.ppc64 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
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#1 SMP ppc64 GNU/Linux g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
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(ostrich) GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
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2014-10-06 21:27:47 +08:00
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IBM XL C/C++ V13.1
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IBM XL Fortran V15.1
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2016-03-08 00:01:53 +08:00
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2017-02-01 06:05:20 +08:00
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Linux 3.10.0-327.10.1.el7 GNU C (gcc), Fortran (gfortran), C++ (g++)
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#1 SMP x86_64 GNU/Linux compilers:
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2018-04-04 05:57:26 +08:00
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(kituo/moohan) Version 4.8.5 20150623 (Red Hat 4.8.5-4)
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Version 4.9.3, Version 5.2.0,
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2017-02-01 06:05:20 +08:00
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Intel(R) C (icc), C++ (icpc), Fortran (icc)
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compilers:
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2018-04-04 05:57:26 +08:00
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Version 17.0.0.098 Build 20160721
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2017-02-01 06:05:20 +08:00
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MPICH 3.1.4 compiled with GCC 4.9.3
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2017-03-21 02:32:26 +08:00
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2013-04-13 03:48:07 +08:00
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SunOS 5.11 32- and 64-bit Sun C 5.12 SunOS_sparc
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(emu) Sun Fortran 95 8.6 SunOS_sparc
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Sun C++ 5.12 SunOS_sparc
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2012-11-15 02:10:03 +08:00
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2017-02-01 06:05:20 +08:00
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Windows 7 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
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2015-02-13 05:56:21 +08:00
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Visual Studio 2013 w/ Intel Fortran 15 (cmake)
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2017-02-01 06:05:20 +08:00
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Visual Studio 2015 w/ Intel Fortran 16 (cmake)
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2010-06-02 04:34:26 +08:00
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2017-02-01 06:05:20 +08:00
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Windows 7 x64 Visual Studio 2012 w/ Intel Fortran 15 (cmake)
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2015-02-13 05:56:21 +08:00
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Visual Studio 2013 w/ Intel Fortran 15 (cmake)
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2017-02-01 06:05:20 +08:00
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Visual Studio 2015 w/ Intel Fortran 16 (cmake)
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2017-10-12 04:13:55 +08:00
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Visual Studio 2015 w/ Intel C, Fortran 2017 (cmake)
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Visual Studio 2015 w/ MSMPI 8 (cmake)
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Cygwin(CYGWIN_NT-6.1 2.8.0(0.309/5/3)
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gcc and gfortran compilers (GCC 5.4.0)
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(cmake and autotools)
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2017-03-21 02:32:26 +08:00
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2017-02-01 06:05:20 +08:00
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Windows 10 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
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2017-10-12 04:13:55 +08:00
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Cygwin(CYGWIN_NT-6.1 2.8.0(0.309/5/3)
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gcc and gfortran compilers (GCC 5.4.0)
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(cmake and autotools)
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2017-02-01 06:05:20 +08:00
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Windows 10 x64 Visual Studio 2015 w/ Intel Fortran 16 (cmake)
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2017-03-21 02:32:26 +08:00
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2017-02-01 06:05:20 +08:00
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Mac OS X Yosemite 10.10.5 Apple clang/clang++ version 6.1 from Xcode 7.0
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64-bit gfortran GNU Fortran (GCC) 4.9.2
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(osx1010dev/osx1010test) Intel icc/icpc/ifort version 15.0.3
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2012-11-15 02:10:03 +08:00
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2017-02-01 06:05:20 +08:00
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Mac OS X El Capitan 10.11.6 Apple clang/clang++ version 7.3.0 from Xcode 7.3
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64-bit gfortran GNU Fortran (GCC) 5.2.0
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2018-04-04 05:57:26 +08:00
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(osx1011dev/osx1011test) Intel icc/icpc/ifort version 16.0.2
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Mac OS Sierra 10.12.6 Apple LLVM version 8.1.0 (clang/clang++-802.0.42)
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64-bit gfortran GNU Fortran (GCC) 7.1.0
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(swallow/kite) Intel icc/icpc/ifort version 17.0.2
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2012-11-15 02:10:03 +08:00
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Tested Configuration Features Summary
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=====================================
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2009-01-06 22:58:21 +08:00
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In the tables below
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2016-03-08 00:01:53 +08:00
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y = tested
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2012-11-15 02:10:03 +08:00
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n = not tested in this release
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C = Cluster
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W = Workstation
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2009-01-06 22:58:21 +08:00
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x = not working in this release
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2012-11-15 02:10:03 +08:00
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dna = does not apply
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2009-01-06 22:58:21 +08:00
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( ) = footnote appears below second table
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2016-03-08 00:01:53 +08:00
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<blank> = testing incomplete on this feature or platform
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2012-11-15 02:10:03 +08:00
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Platform C F90/ F90 C++ zlib SZIP
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parallel F2003 parallel
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2013-04-13 03:48:07 +08:00
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Solaris2.11 32-bit n y/y n y y y
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Solaris2.11 64-bit n y/n n y y y
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2013-07-10 04:44:24 +08:00
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Windows 7 y y/y n y y y
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2017-03-21 02:32:26 +08:00
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Windows 7 x64 y y/y y y y y
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2013-07-10 04:44:24 +08:00
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Windows 7 Cygwin n y/n n y y y
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Windows 7 x64 Cygwin n y/n n y y y
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2017-02-01 06:05:20 +08:00
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Windows 10 y y/y n y y y
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Windows 10 x64 y y/y n y y y
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Mac OS X Mountain Lion 10.8.5 64-bit n y/y n y y y
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Mac OS X Mavericks 10.9.5 64-bit n y/y n y y ?
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Mac OS X Yosemite 10.10.5 64-bit n y/y n y y ?
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Mac OS X El Capitan 10.11.6 64-bit n y/y n y y ?
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2017-02-01 07:10:07 +08:00
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CentOS 6.7 Linux 2.6.18 x86_64 GNU n y/y n y y y
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CentOS 6.7 Linux 2.6.18 x86_64 Intel n y/y n y y y
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CentOS 6.7 Linux 2.6.32 x86_64 PGI n y/y n y y y
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CentOS 7.2 Linux 2.6.32 x86_64 GNU y y/y y y y y
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CentOS 7.2 Linux 2.6.32 x86_64 Intel n y/y n y y y
|
2017-02-01 06:05:20 +08:00
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|
Linux 2.6.32-573.18.1.el6.ppc64 n y/n n y y y
|
2012-11-15 02:10:03 +08:00
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|
|
|
|
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|
2016-03-08 00:01:53 +08:00
|
|
|
Platform Shared Shared Shared Thread-
|
|
|
|
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C libs F90 libs C++ libs safe
|
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|
|
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Solaris2.11 32-bit y y y y
|
|
|
|
|
Solaris2.11 64-bit y y y y
|
2012-11-15 02:10:03 +08:00
|
|
|
Windows 7 y y y y
|
|
|
|
|
Windows 7 x64 y y y y
|
2013-07-10 04:44:24 +08:00
|
|
|
Windows 7 Cygwin n n n y
|
|
|
|
|
Windows 7 x64 Cygwin n n n y
|
2017-02-01 06:05:20 +08:00
|
|
|
Windows 10 y y y y
|
|
|
|
|
Windows 10 x64 y y y y
|
|
|
|
|
Mac OS X Mountain Lion 10.8.5 64-bit y n y y
|
|
|
|
|
Mac OS X Mavericks 10.9.5 64-bit y n y y
|
|
|
|
|
Mac OS X Yosemite 10.10.5 64-bit y n y y
|
|
|
|
|
Mac OS X El Capitan 10.11.6 64-bit y n y y
|
2017-02-01 07:10:07 +08:00
|
|
|
CentOS 6.7 Linux 2.6.18 x86_64 GNU y y y y
|
|
|
|
|
CentOS 6.7 Linux 2.6.18 x86_64 Intel y y y n
|
|
|
|
|
CentOS 6.7 Linux 2.6.32 x86_64 PGI y y y n
|
|
|
|
|
CentOS 7.2 Linux 2.6.32 x86_64 GNU y y y n
|
|
|
|
|
CentOS 7.2 Linux 2.6.32 x86_64 Intel y y y n
|
2017-02-01 06:05:20 +08:00
|
|
|
Linux 2.6.32-573.18.1.el6.ppc64 y y y n
|
2012-11-15 02:10:03 +08:00
|
|
|
|
|
|
|
|
Compiler versions for each platform are listed in the preceding
|
|
|
|
|
"Supported Platforms" table.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
More Tested Platforms
|
|
|
|
|
=====================
|
|
|
|
|
The following platforms are not supported but have been tested for this release.
|
|
|
|
|
|
2017-05-05 06:14:38 +08:00
|
|
|
Linux 2.6.32-573.22.1.el6 GNU C (gcc), Fortran (gfortran), C++ (g++)
|
|
|
|
|
#1 SMP x86_64 GNU/Linux compilers:
|
|
|
|
|
(mayll/platypus) Version 4.4.7 20120313
|
2018-04-04 05:57:26 +08:00
|
|
|
Version 4.9.3, 5.3.0, 6.2.0
|
2017-05-05 06:14:38 +08:00
|
|
|
PGI C, Fortran, C++ for 64-bit target on
|
|
|
|
|
x86-64;
|
2018-04-04 05:57:26 +08:00
|
|
|
Version 17.10-0
|
2017-05-05 06:14:38 +08:00
|
|
|
Intel(R) C (icc), C++ (icpc), Fortran (icc)
|
|
|
|
|
compilers:
|
2018-04-04 05:57:26 +08:00
|
|
|
Version 17.0.4.196 Build 20170411
|
2017-05-05 06:14:38 +08:00
|
|
|
MPICH 3.1.4 compiled with GCC 4.9.3
|
|
|
|
|
|
|
|
|
|
Linux 3.10.0-327.18.2.el7 GNU C (gcc) and C++ (g++) compilers
|
|
|
|
|
#1 SMP x86_64 GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
|
|
|
|
|
(jelly) with NAG Fortran Compiler Release 6.1(Tozai)
|
2018-04-04 05:57:26 +08:00
|
|
|
GCC Version 7.1.0
|
|
|
|
|
OpenMPI 3.0.0-GCC-7.2.0-2.29
|
2017-05-05 06:14:38 +08:00
|
|
|
Intel(R) C (icc) and C++ (icpc) compilers
|
2018-04-04 05:57:26 +08:00
|
|
|
Version 17.0.0.098 Build 20160721
|
2017-05-05 06:14:38 +08:00
|
|
|
with NAG Fortran Compiler Release 6.1(Tozai)
|
|
|
|
|
|
2018-04-04 05:57:26 +08:00
|
|
|
Linux 3.10.0-327.10.1.el7 MPICH 3.2 compiled with GCC 5.3.0
|
|
|
|
|
#1 SMP x86_64 GNU/Linux
|
|
|
|
|
(moohan)
|
|
|
|
|
|
2017-02-04 03:24:12 +08:00
|
|
|
Linux 2.6.32-573.18.1.el6.ppc64 MPICH mpich 3.1.4 compiled with
|
|
|
|
|
#1 SMP ppc64 GNU/Linux IBM XL C/C++ for Linux, V13.1
|
|
|
|
|
(ostrich) and IBM XL Fortran for Linux, V15.1
|
2014-04-17 01:11:51 +08:00
|
|
|
|
2017-02-04 03:24:12 +08:00
|
|
|
Debian 8.4 3.16.0-4-amd64 #1 SMP Debian 3.16.36-1 x86_64 GNU/Linux
|
|
|
|
|
gcc, g++ (Debian 4.9.2-10) 4.9.2
|
|
|
|
|
GNU Fortran (Debian 4.9.2-10) 4.9.2
|
2012-11-15 02:10:03 +08:00
|
|
|
(cmake and autotools)
|
|
|
|
|
|
2017-02-04 03:24:12 +08:00
|
|
|
Fedora 24 4.7.2-201.fc24.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
|
2017-05-18 22:12:47 +08:00
|
|
|
gcc, g++ (GCC) 6.1.1 20160621
|
2017-05-05 06:14:38 +08:00
|
|
|
(Red Hat 6.1.1-3)
|
2017-05-18 22:12:47 +08:00
|
|
|
GNU Fortran (GCC) 6.1.1 20160621
|
2017-05-05 06:14:38 +08:00
|
|
|
(Red Hat 6.1.1-3)
|
2012-11-15 02:10:03 +08:00
|
|
|
(cmake and autotools)
|
|
|
|
|
|
2017-02-04 03:24:12 +08:00
|
|
|
Ubuntu 16.04.1 4.4.0-38-generic #57-Ubuntu SMP x86_64 GNU/Linux
|
2017-05-18 22:12:47 +08:00
|
|
|
gcc, g++ (Ubuntu 5.4.0-6ubuntu1~16.04.2)
|
2017-05-05 06:14:38 +08:00
|
|
|
5.4.0 20160609
|
2017-05-18 22:12:47 +08:00
|
|
|
GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.2)
|
2017-05-05 06:14:38 +08:00
|
|
|
5.4.0 20160609
|
2012-11-15 02:10:03 +08:00
|
|
|
(cmake and autotools)
|
2016-03-08 00:01:53 +08:00
|
|
|
|
2017-03-21 02:32:26 +08:00
|
|
|
|
2009-01-06 22:58:21 +08:00
|
|
|
Known Problems
|
|
|
|
|
==============
|
2004-09-15 02:52:05 +08:00
|
|
|
|
2017-05-05 06:14:38 +08:00
|
|
|
At present, metadata cache images may not be generated by parallel
|
|
|
|
|
applications. Parallel applications can read files with metadata cache
|
|
|
|
|
images, but since this is a collective operation, a deadlock is possible
|
|
|
|
|
if one or more processes do not participate.
|
2007-04-14 02:53:50 +08:00
|
|
|
|
2017-05-05 06:14:38 +08:00
|
|
|
Known problems in previous releases can be found in the HISTORY*.txt files
|
|
|
|
|
in the HDF5 source. Please report any new problems found to
|
|
|
|
|
help@hdfgroup.org.
|
2007-04-14 02:53:50 +08:00
|
|
|
|
