2023-11-15 22:20:50 +08:00
|
|
|
name: Test HDF5 REST VOL
|
|
|
|
|
|
|
|
on:
|
|
|
|
workflow_call:
|
|
|
|
inputs:
|
|
|
|
build_mode:
|
|
|
|
description: "CMake Build type"
|
|
|
|
required: true
|
|
|
|
type: string
|
|
|
|
|
|
|
|
permissions:
|
|
|
|
contents: read
|
|
|
|
|
|
|
|
env:
|
|
|
|
ADMIN_PASSWORD: admin
|
|
|
|
ADMIN_USERNAME: admin
|
|
|
|
USER_NAME: test_user1
|
|
|
|
USER_PASSWORD: test
|
|
|
|
USER2_NAME: test_user2
|
|
|
|
USER2_PASSWORD: test
|
|
|
|
HSDS_USERNAME: test_user1
|
|
|
|
HSDS_PASSWORD: test
|
|
|
|
HSDS_PATH: /home/test_user1/
|
|
|
|
HDF5_API_TEST_PATH_PREFIX: /home/test_user1/
|
|
|
|
HSDS_ENDPOINT: http+unix://%2Ftmp%2Fhs%2Fsn_1.sock
|
|
|
|
HDF5_VOL_CONNECTOR: REST
|
|
|
|
ROOT_DIR: ${{github.workspace}}/hsdsdata
|
|
|
|
BUCKET_NAME: hsdstest
|
|
|
|
|
|
|
|
jobs:
|
|
|
|
build_and_test:
|
|
|
|
name: Test HDF5 REST VOL connector
|
|
|
|
runs-on: ubuntu-latest
|
|
|
|
strategy:
|
|
|
|
matrix:
|
|
|
|
python-version: ["3.10"]
|
|
|
|
|
|
|
|
steps:
|
|
|
|
- name: Install dependencies
|
|
|
|
run: |
|
|
|
|
sudo apt-get update
|
|
|
|
sudo apt-get install automake autoconf libtool libtool-bin libcurl4-openssl-dev libyajl-dev
|
|
|
|
|
|
|
|
- name: Checkout HDF5
|
2023-12-14 04:02:24 +08:00
|
|
|
uses: actions/checkout@v4.1.1
|
2023-11-15 22:20:50 +08:00
|
|
|
with:
|
|
|
|
repository: HDFGroup/hdf5
|
|
|
|
path: hdf5
|
|
|
|
|
|
|
|
- name: Configure HDF5 with REST VOL connector
|
|
|
|
shell: bash
|
|
|
|
run: |
|
|
|
|
mkdir ${{ github.workspace }}/hdf5/build
|
|
|
|
cd ${{ github.workspace }}/hdf5/build
|
|
|
|
cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
|
|
|
|
-DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
|
|
|
|
-DBUILD_STATIC_LIBS=OFF \
|
|
|
|
-DHDF5_BUILD_HL_LIB:BOOL=ON \
|
|
|
|
-DHDF5_TEST_API:BOOL=ON \
|
|
|
|
-DALLOW_UNSUPPORTED:BOOL=ON \
|
|
|
|
-DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
|
|
|
|
-DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF \
|
|
|
|
-DHDF5_VOL_ALLOW_EXTERNAL:STRING="GIT" \
|
|
|
|
-DHDF5_VOL_URL01:STRING="https://github.com/HDFGroup/vol-rest.git" \
|
|
|
|
-DHDF5_VOL_VOL-REST_BRANCH:STRING="master" \
|
|
|
|
-DHDF5_VOL_VOL-REST_NAME:STRING="REST" \
|
|
|
|
-DHDF5_VOL_VOL-REST_TEST_PARALLEL:BOOL=OFF \
|
|
|
|
-DHDF5_VOL_REST_ENABLE_EXAMPLES=ON \
|
|
|
|
${{ github.workspace }}/hdf5
|
|
|
|
cat src/libhdf5.settings
|
|
|
|
|
|
|
|
- name: Build and install HDF5 and REST VOL connector
|
|
|
|
shell: bash
|
|
|
|
working-directory: ${{ github.workspace }}/hdf5/build
|
|
|
|
run: |
|
|
|
|
cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
|
|
|
|
cmake --install .
|
|
|
|
echo "LD_LIBRARY_PATH=${{ github.workspace }}/hdf5/build/bin" >> $GITHUB_ENV
|
|
|
|
|
|
|
|
- name: Set up Python ${{ matrix.python-version }}
|
2023-12-14 04:02:24 +08:00
|
|
|
uses: actions/setup-python@v5
|
2023-11-15 22:20:50 +08:00
|
|
|
with:
|
|
|
|
python-version: ${{ matrix.python-version }}
|
|
|
|
|
|
|
|
- name: Checkout HSDS
|
2023-12-14 04:02:24 +08:00
|
|
|
uses: actions/checkout@v4.1.1
|
2023-11-15 22:20:50 +08:00
|
|
|
with:
|
|
|
|
repository: HDFGroup/hsds
|
|
|
|
path: ${{github.workspace}}/hsds
|
|
|
|
|
|
|
|
- name: Get HSDS HEAD commit SHA
|
|
|
|
shell: bash
|
|
|
|
working-directory: ${{github.workspace}}/hsds
|
|
|
|
run: |
|
|
|
|
export HSDS_COMMIT=`git rev-parse HEAD`
|
|
|
|
export HSDS_COMMIT_SHORT=`git rev-parse --short HEAD`
|
|
|
|
echo "HSDS_COMMIT=${HSDS_COMMIT}" >> $GITHUB_ENV
|
|
|
|
echo "HSDS_COMMIT_SHORT=${HSDS_COMMIT_SHORT}" >> $GITHUB_ENV
|
|
|
|
|
|
|
|
# Note that we don't currently cache HSDS, as we would need
|
|
|
|
# to pick a fixed commit/tag in order to generate a reasonable
|
|
|
|
# key to use for caching/restoring from the cache
|
|
|
|
#- name: Restore HSDS (${{ env.HSDS_COMMIT_SHORT }}) installation cache
|
|
|
|
# id: restore-hsds
|
|
|
|
# uses: actions/cache@v3
|
|
|
|
# with:
|
|
|
|
# path: ${{ runner.workspace }}/hsds-${{ env.HSDS_COMMIT_SHORT }}-install
|
|
|
|
# key: ${{ runner.os }}-${{ runner.arch }}-hsds-${{ env.HSDS_COMMIT }}-${{ inputs.build_mode }}-cache
|
|
|
|
|
|
|
|
- name: Install HSDS (${{ env.HSDS_COMMIT_SHORT }}) dependencies
|
|
|
|
shell: bash
|
|
|
|
working-directory: ${{github.workspace}}/hsds
|
|
|
|
run: |
|
|
|
|
python -m pip install --upgrade pip
|
|
|
|
python -m pip install pytest
|
|
|
|
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
|
|
|
|
|
|
|
|
- name: Install HSDS (${{ env.HSDS_COMMIT_SHORT }}) package
|
|
|
|
#if: ${{ ! steps.restore-hsds.outputs.cache-hit }}
|
|
|
|
shell: bash
|
|
|
|
run: |
|
|
|
|
cd ${{github.workspace}}/hsds
|
|
|
|
pip install -e .
|
|
|
|
|
|
|
|
#- name: Cache HSDS (${{ env.HSDS_COMMIT_SHORT }}) installation
|
|
|
|
# uses: actions/cache/save@v3
|
|
|
|
# if: ${{ ! steps.restore-hsds.outputs.cache-hit }}
|
|
|
|
# with:
|
|
|
|
# path: ${{ runner.workspace }}/hsds-${{ env.HSDS_COMMIT_SHORT }}-install
|
|
|
|
# key: ${{ runner.os }}-${{ runner.arch }}-hsds-${{ env.HSDS_COMMIT }}-${{ inputs.build_mode }}-cache
|
|
|
|
|
|
|
|
- name: Run HSDS unit tests
|
|
|
|
shell: bash
|
|
|
|
working-directory: ${{github.workspace}}/hsds
|
|
|
|
run: |
|
|
|
|
pytest
|
|
|
|
|
|
|
|
- name: Start HSDS
|
|
|
|
working-directory: ${{github.workspace}}/hsds
|
|
|
|
run: |
|
|
|
|
mkdir ${{github.workspace}}/hsdsdata &&
|
|
|
|
mkdir ${{github.workspace}}/hsdsdata/hsdstest &&
|
|
|
|
cp admin/config/groups.default admin/config/groups.txt &&
|
|
|
|
cp admin/config/passwd.default admin/config/passwd.txt &&
|
|
|
|
cp admin/config/groups.default admin/config/groups.txt &&
|
|
|
|
cp admin/config/passwd.default admin/config/passwd.txt
|
|
|
|
ROOT_DIR=${{github.workspace}}/hsdsdata ./runall.sh --no-docker 1 &
|
|
|
|
sleep 10
|
|
|
|
|
|
|
|
- name: Test HSDS
|
|
|
|
working-directory: ${{github.workspace}}/hsds
|
|
|
|
run: |
|
|
|
|
python tests/integ/setup_test.py
|
|
|
|
|
|
|
|
- name: Test HDF5 REST VOL connector with external tests
|
|
|
|
working-directory: ${{github.workspace}}/hdf5/build/
|
|
|
|
run: |
|
|
|
|
sudo \
|
|
|
|
HDF5_PLUGIN_PATH="${{ runner.workspace }}/hdf5_build/lib" \
|
|
|
|
HDF5_VOL_CONNECTOR=REST \
|
|
|
|
ADMIN_USERNAME=admin ADMIN_PASSWORD=admin \
|
|
|
|
USER_NAME=test_user1 USER_PASSWORD=test \
|
|
|
|
USER2_NAME=test_user2 USER2_PASSWORD=test \
|
|
|
|
HSDS_USERNAME=test_user1 HSDS_PASSWORD=test \
|
|
|
|
HSDS_PATH=/home/test_user1/ HDF5_API_TEST_PATH_PREFIX=/home/test_user1/ \
|
|
|
|
HSDS_ENDPOINT=http+unix://%2Ftmp%2Fhs%2Fsn_1.sock \
|
|
|
|
ROOT_DIR=${{github.workspace}}/hsdsdata \
|
|
|
|
BUCKET_NAME=hsdstest \
|
|
|
|
ctest --build-config ${{ inputs.build_mode }} -VV -R "test_rest_vol" .
|
|
|
|
|
|
|
|
- name: Test HDF5 REST VOL connector with HDF5 API tests
|
|
|
|
working-directory: ${{github.workspace}}/hdf5/build/
|
|
|
|
# Don't test the REST VOL connector with the HDF5 API tests yet,
|
|
|
|
# as it doesn't currently pass all the tests. Leave the step in,
|
|
|
|
# but skip it to leave an indication that this should be re-enabled
|
|
|
|
# in the future.
|
|
|
|
if: false
|
|
|
|
run: |
|
|
|
|
sudo \
|
|
|
|
HDF5_PLUGIN_PATH="${{ runner.workspace }}/hdf5_build/lib" \
|
|
|
|
HDF5_VOL_CONNECTOR=REST \
|
|
|
|
ADMIN_USERNAME=admin ADMIN_PASSWORD=admin \
|
|
|
|
USER_NAME=test_user1 USER_PASSWORD=test \
|
|
|
|
USER2_NAME=test_user2 USER2_PASSWORD=test \
|
|
|
|
HSDS_USERNAME=test_user1 HSDS_PASSWORD=test \
|
|
|
|
HSDS_PATH=/home/test_user1/ HDF5_API_TEST_PATH_PREFIX=/home/test_user1/ \
|
|
|
|
HSDS_ENDPOINT=http+unix://%2Ftmp%2Fhs%2Fsn_1.sock \
|
|
|
|
ROOT_DIR=${{github.workspace}}/hsdsdata \
|
|
|
|
BUCKET_NAME=hsdstest \
|
|
|
|
ctest --build-config ${{ inputs.build_mode }} -VV -R "h5_api" .
|
|
|
|
|
|
|
|
- name: Stop HSDS
|
|
|
|
working-directory: ${{github.workspace}}/hsds
|
|
|
|
run: |
|
|
|
|
./stopall.sh
|