2023-11-15 22:20:50 +08:00
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name: Test HDF5 ADIOS2 VOL
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on:
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workflow_call:
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inputs:
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build_mode:
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description: "CMake Build type"
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required: true
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type: string
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permissions:
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contents: read
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env:
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ADIOS2_COMMIT: 3adf20a929b69c23312a6b5f3cccc49376df77e8
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ADIOS2_COMMIT_SHORT: 3adf20a
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jobs:
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build_and_test:
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name: Test HDF5 ADIOS2 VOL connector
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runs-on: ubuntu-latest
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steps:
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- name: Install dependencies
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run: |
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2024-04-02 00:04:55 +08:00
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sudo apt-get update
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2023-11-15 22:20:50 +08:00
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sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
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- name: Checkout HDF5
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2023-12-14 04:02:24 +08:00
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uses: actions/checkout@v4.1.1
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2023-11-15 22:20:50 +08:00
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with:
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repository: HDFGroup/hdf5
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path: hdf5
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- name: Configure HDF5
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shell: bash
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run: |
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mkdir ${{ github.workspace }}/hdf5/build
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cd ${{ github.workspace }}/hdf5/build
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cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
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-DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
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-DBUILD_STATIC_LIBS=OFF \
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-DHDF5_TEST_API:BOOL=ON \
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-DHDF5_TEST_API_ENABLE_ASYNC:BOOL=ON \
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-DHDF5_ENABLE_PARALLEL:BOOL=ON \
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-DHDF5_ENABLE_THREADSAFE:BOOL=ON \
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-DALLOW_UNSUPPORTED:BOOL=ON \
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-DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
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${{ github.workspace }}/hdf5
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cat src/libhdf5.settings
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- name: Build and install HDF5
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shell: bash
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working-directory: ${{ github.workspace }}/hdf5/build
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run: |
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cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
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cmake --install .
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echo "LD_LIBRARY_PATH=${{ github.workspace }}/hdf5/build/bin" >> $GITHUB_ENV
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echo "PATH=${{ runner.workspace }}/hdf5_build/bin:${PATH}" >> $GITHUB_ENV
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# Since the HDF5 ADIOS2 VOL connector is part of the ADIOS2 repository,
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# it is difficult to use CMake's FetchContent functionality to fetch
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# and build the ADIOS2 connector. Also, since building of ADIOS2 takes
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# a while, it isn't ideal to have to rebuild it every time we want to
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# test against changes in HDF5 or the VOL connector. Therefore, just
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# use a fixed commit for the build of ADIOS2 so we can cache that and
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# still test the connector against changes in HDF5.
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- name: Restore ADIOS2 (${{ env.ADIOS2_COMMIT_SHORT }}) installation cache
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id: cache-adios2
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2024-02-07 01:09:41 +08:00
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uses: actions/cache@v4
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2023-11-15 22:20:50 +08:00
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with:
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path: ${{ runner.workspace }}/adios2-${{ env.ADIOS2_COMMIT_SHORT }}-install
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key: ${{ runner.os }}-${{ runner.arch }}-adios2-${{ env.ADIOS2_COMMIT }}-${{ inputs.build_mode }}-cache
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- if: ${{ steps.cache-adios2.outputs.cache-hit != 'true' }}
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name: Checkout ADIOS2 (${{ env.ADIOS2_COMMIT_SHORT }})
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2023-12-14 04:02:24 +08:00
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uses: actions/checkout@v4.1.1
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2023-11-15 22:20:50 +08:00
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with:
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repository: ornladios/ADIOS2
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ref: ${{ env.ADIOS2_COMMIT }}
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path: adios2
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- if: ${{ steps.cache-adios2.outputs.cache-hit != 'true' }}
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name: Install ADIOS2 (${{ env.ADIOS2_COMMIT_SHORT }})
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env:
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CXX: mpic++
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CC: mpicc
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run: |
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mkdir adios2/build
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cd adios2/build
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cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
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-DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/adios2-${{ env.ADIOS2_COMMIT_SHORT }}-install \
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-DADIOS2_USE_HDF5:BOOL=ON \
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-DHDF5_ROOT=${{ runner.workspace }}/hdf5_build/ \
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..
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make -j2
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make -j2 install
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- name: Cache ADIOS2 (${{ env.ADIOS2_COMMIT_SHORT }}) installation
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2024-02-07 01:09:41 +08:00
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uses: actions/cache/save@v4
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2023-11-15 22:20:50 +08:00
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if: ${{ steps.cache-adios2.outputs.cache-hit != 'true' }}
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with:
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path: ${{ runner.workspace }}/adios2-${{ env.ADIOS2_COMMIT_SHORT }}-install
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key: ${{ runner.os }}-${{ runner.arch }}-adios2-${{ env.ADIOS2_COMMIT }}-${{ inputs.build_mode }}-cache
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- name: Set environment variables for tests
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run: |
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echo "HDF5_PLUGIN_PATH=${{ runner.workspace }}/adios2-${{ env.ADIOS2_COMMIT_SHORT }}-install/lib" >> $GITHUB_ENV
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echo "HDF5_VOL_CONNECTOR=ADIOS2_VOL" >> $GITHUB_ENV
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# Skip parallel testing for now as it appears to hang
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- name: Test HDF5 ADIOS2 VOL connector with HDF5 API tests
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working-directory: ${{ github.workspace }}/hdf5/build
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# Don't test the ADIOS2 VOL connector with the HDF5 API tests yet,
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# as it doesn't currently pass all the tests. Leave the step in,
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# but skip it to leave an indication that this should be re-enabled
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# in the future.
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if: false
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run: |
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ctest --build-config ${{ inputs.build_mode }} -VV -R "h5_api" -E "parallel" .
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