2003-04-01 01:59:04 +08:00
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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2007-02-07 22:56:24 +08:00
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* Copyright by The HDF Group. *
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2003-04-01 01:59:04 +08:00
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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2017-04-18 03:32:16 +08:00
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* the COPYING file, which can be found at the root of the source code *
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2021-02-17 22:52:04 +08:00
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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2017-04-18 03:32:16 +08:00
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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2003-04-01 01:59:04 +08:00
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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2020-09-30 22:27:10 +08:00
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#define H5G_FRIEND /*suppress error about including H5Gpkg */
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2005-11-15 10:55:39 +08:00
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/* Define this macro to indicate that the testing APIs should be available */
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#define H5G_TESTING
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#include "h5test.h"
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2020-09-30 22:27:10 +08:00
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#include "H5Gpkg.h" /* Groups */
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1998-11-25 22:58:22 +08:00
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2023-06-19 13:13:38 +08:00
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static const char *FILENAME[] = {"stab", NULL};
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1998-11-25 22:58:22 +08:00
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2020-09-30 22:27:10 +08:00
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#define NAME_BUF_SIZE 1024
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2005-11-15 10:55:39 +08:00
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2006-10-02 18:24:03 +08:00
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/* Definitions for 'long' test */
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2020-09-30 22:27:10 +08:00
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#define LONG_NAME_LEN 40960
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2006-10-02 18:24:03 +08:00
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/* Definitions for 'large' test */
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2020-09-30 22:27:10 +08:00
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#define LARGE_NOBJS 5000
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2006-10-02 18:24:03 +08:00
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2005-11-15 10:55:39 +08:00
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/* Definitions for 'lifecycle' test */
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2020-09-30 22:27:10 +08:00
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#define LIFECYCLE_TOP_GROUP "top"
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#define LIFECYCLE_BOTTOM_GROUP "bottom %u"
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#define LIFECYCLE_LOCAL_HEAP_SIZE_HINT 256
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#define LIFECYCLE_MAX_COMPACT 4
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#define LIFECYCLE_MIN_DENSE 3
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#define LIFECYCLE_EST_NUM_ENTRIES 4
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#define LIFECYCLE_EST_NAME_LEN 8
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2005-11-15 10:55:39 +08:00
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/* Definitions for 'long_compact' test */
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2020-09-30 22:27:10 +08:00
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#define LONG_COMPACT_LENGTH ((64 * 1024) + 1024)
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2005-11-15 10:55:39 +08:00
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/* Definitions for 'read_old' test */
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2020-09-30 22:27:10 +08:00
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#define READ_OLD_NGROUPS 100
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2005-11-15 10:55:39 +08:00
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/* The group_old.h5 is generated from gen_old_fill.c in HDF5 'test' directory
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* for version 1.6. To get this data file, simply compile gen_old_group.c with
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* the HDF5 library in that branch and run it. */
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2020-09-30 22:27:10 +08:00
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#define FILE_OLD_GROUPS "group_old.h5"
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2011-03-25 02:33:45 +08:00
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#define FILE_OLD_GROUPS_COPY "group_old_copy.h5"
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2005-11-15 10:55:39 +08:00
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/* Definitions for 'no_compact' test */
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2020-09-30 22:27:10 +08:00
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#define NO_COMPACT_TOP_GROUP "top"
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#define NO_COMPACT_BOTTOM_GROUP "bottom %u"
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#define NO_COMPACT_MAX_COMPACT 0
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#define NO_COMPACT_MIN_DENSE 0
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2005-11-15 10:55:39 +08:00
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2007-08-24 04:25:25 +08:00
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/* Definitions for 'gcpl_on_root' test */
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2020-09-30 22:27:10 +08:00
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#define GCPL_ON_ROOT_MIDDLE_GROUP "/middle"
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#define GCPL_ON_ROOT_BOTTOM_GROUP "/middle/bottom"
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#define GCPL_ON_ROOT_MAX_COMPACT 4
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#define GCPL_ON_ROOT_MIN_DENSE 2
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2005-11-15 10:55:39 +08:00
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2020-01-17 05:29:34 +08:00
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#ifndef H5_NO_DEPRECATED_SYMBOLS
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2007-08-24 04:25:25 +08:00
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/* Definitions for 'old_api' test */
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2020-09-30 22:27:10 +08:00
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#define OLD_API_GROUP "/old_api"
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2020-01-17 05:29:34 +08:00
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#endif /* H5_NO_DEPRECATED_SYMBOLS */
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2007-08-24 04:25:25 +08:00
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2009-03-24 02:51:29 +08:00
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/* Definitions for 'corrupt_stab_msg' test */
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2020-09-30 22:27:10 +08:00
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#define CORRUPT_STAB_FILE "corrupt_stab_msg.h5"
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#define CORRUPT_STAB_TMP_FILE "corrupt_stab_msg_tmp.h5"
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#define CORRUPT_STAB_DSET "DS1"
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2019-08-16 05:46:00 +08:00
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1998-11-25 22:58:22 +08:00
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/*-------------------------------------------------------------------------
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2019-08-16 05:46:00 +08:00
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* Function: test_misc
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1998-11-25 22:58:22 +08:00
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*
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2019-08-16 05:46:00 +08:00
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* Purpose: Test miscellaneous group stuff.
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1998-11-25 22:58:22 +08:00
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*
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2019-08-16 05:46:00 +08:00
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* Return: Success: 0
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1998-11-25 22:58:22 +08:00
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*
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2019-08-16 05:46:00 +08:00
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* Failure: number of errors
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1998-11-25 22:58:22 +08:00
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*
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*-------------------------------------------------------------------------
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*/
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static int
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2023-09-06 04:11:52 +08:00
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test_misc(hid_t fcpl, hid_t fapl, bool new_format)
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1998-11-25 22:58:22 +08:00
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{
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2023-09-09 07:06:23 +08:00
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hid_t fid = (H5I_INVALID_HID); /* File ID */
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hid_t g1 = (H5I_INVALID_HID), g2 = (H5I_INVALID_HID), g3 = (H5I_INVALID_HID);
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2020-09-30 22:27:10 +08:00
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char filename[NAME_BUF_SIZE];
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char comment[64];
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2005-08-14 04:53:35 +08:00
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2020-09-30 22:27:10 +08:00
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if (new_format)
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2022-05-04 23:49:01 +08:00
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TESTING("miscellaneous group tests (w/new group format)");
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2006-10-02 18:24:03 +08:00
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else
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2022-05-04 23:49:01 +08:00
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TESTING("miscellaneous group tests");
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2006-10-02 18:24:03 +08:00
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/* Create file */
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h5_fixname(FILENAME[0], fapl, filename, sizeof(filename));
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2020-09-30 22:27:10 +08:00
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if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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1998-11-25 22:58:22 +08:00
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2002-03-29 03:27:45 +08:00
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/* Create initial groups for testing, then close */
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2020-09-30 22:27:10 +08:00
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if ((g1 = H5Gcreate2(fid, "test_1a", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if ((g2 = H5Gcreate2(g1, "sub_1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if ((g3 = H5Gcreate2(fid, "test_1b", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Oset_comment(g3, "hello world") < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Gclose(g1) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Gclose(g2) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Gclose(g3) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2005-08-14 04:53:35 +08:00
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2021-12-07 22:27:29 +08:00
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/* Open all groups with absolute names to check for existence */
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2020-09-30 22:27:10 +08:00
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if ((g1 = H5Gopen2(fid, "/test_1a", H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if ((g2 = H5Gopen2(fid, "/test_1a/sub_1", H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if ((g3 = H5Gopen2(fid, "/test_1b", H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Oget_comment_by_name(g3, "././.", comment, sizeof comment, H5P_DEFAULT) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2023-09-16 06:13:18 +08:00
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if (strcmp(comment, "hello world") != 0) {
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2020-09-30 22:27:10 +08:00
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H5_FAILED();
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2023-09-16 06:13:18 +08:00
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puts(" Read the wrong comment string from the group.");
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2023-06-28 23:31:32 +08:00
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printf(" got: \"%s\"\n ans: \"hello world\"\n", comment);
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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1998-11-25 22:58:22 +08:00
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}
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2020-09-30 22:27:10 +08:00
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if (H5Gclose(g1) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Gclose(g2) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Gclose(g3) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2002-03-29 03:27:45 +08:00
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2004-07-20 08:47:37 +08:00
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/* Check that creating groups with no-op names isn't allowed */
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2021-03-17 23:25:39 +08:00
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H5E_BEGIN_TRY
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{
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g1 = H5Gcreate2(fid, "/", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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}
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2020-09-30 22:27:10 +08:00
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H5E_END_TRY
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if (g1 >= 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2004-07-20 08:47:37 +08:00
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2021-03-17 23:25:39 +08:00
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H5E_BEGIN_TRY
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{
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g1 = H5Gcreate2(fid, "./././", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
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}
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2020-09-30 22:27:10 +08:00
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H5E_END_TRY
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if (g1 >= 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2006-10-02 18:24:03 +08:00
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/* Close file */
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2020-09-30 22:27:10 +08:00
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if (H5Fclose(fid) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2004-07-20 08:47:37 +08:00
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1998-11-25 22:58:22 +08:00
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PASSED();
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return 0;
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2020-09-30 22:27:10 +08:00
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error:
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H5E_BEGIN_TRY
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{
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H5Gclose(g1);
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H5Gclose(g2);
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H5Gclose(g3);
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2019-08-16 05:46:00 +08:00
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H5Fclose(fid);
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2020-09-30 22:27:10 +08:00
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}
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2023-06-16 12:49:02 +08:00
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H5E_END_TRY
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2002-03-29 03:27:45 +08:00
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return 1;
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}
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/*-------------------------------------------------------------------------
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* Purpose: Creates a group with a very long name
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*
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2019-08-16 05:46:00 +08:00
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* Return: Success: 0
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2002-03-29 03:27:45 +08:00
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*
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2019-08-16 05:46:00 +08:00
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* Failure: number of errors
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2002-03-29 03:27:45 +08:00
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*
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*-------------------------------------------------------------------------
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*/
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static int
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2023-09-06 04:11:52 +08:00
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test_long(hid_t fcpl, hid_t fapl, bool new_format)
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2002-03-29 03:27:45 +08:00
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{
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2023-09-09 07:06:23 +08:00
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hid_t fid = (H5I_INVALID_HID); /* File ID */
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hid_t g1 = (H5I_INVALID_HID), g2 = (H5I_INVALID_HID);
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2023-07-18 19:27:07 +08:00
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size_t name2Len;
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2022-07-27 05:45:46 +08:00
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char *name1 = NULL, *name2 = NULL;
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2020-09-30 22:27:10 +08:00
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char filename[NAME_BUF_SIZE];
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size_t i;
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2005-08-14 04:53:35 +08:00
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2020-09-30 22:27:10 +08:00
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if (new_format)
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2022-05-04 23:49:01 +08:00
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TESTING("long names (w/new group format)");
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2006-10-02 18:24:03 +08:00
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else
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2022-05-04 23:49:01 +08:00
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TESTING("long names");
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2006-10-02 18:24:03 +08:00
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/* Create file */
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h5_fixname(FILENAME[0], fapl, filename, sizeof(filename));
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2020-09-30 22:27:10 +08:00
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if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2002-03-29 03:27:45 +08:00
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/* Group names */
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2023-06-29 06:48:12 +08:00
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name1 = (char *)malloc((size_t)LONG_NAME_LEN);
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2020-09-30 22:27:10 +08:00
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for (i = 0; i < LONG_NAME_LEN; i++)
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name1[i] = (char)('A' + i % 26);
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2006-10-02 18:24:03 +08:00
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name1[LONG_NAME_LEN - 1] = '\0';
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2023-07-18 19:27:07 +08:00
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name2Len = (2 * LONG_NAME_LEN) + 2;
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2023-06-29 06:48:12 +08:00
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name2 = (char *)malloc(name2Len);
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2023-09-16 06:13:18 +08:00
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snprintf(name2, name2Len, "%s/%s", name1, name1);
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2002-03-29 03:27:45 +08:00
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/* Create groups */
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2020-09-30 22:27:10 +08:00
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if ((g1 = H5Gcreate2(fid, name1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if ((g2 = H5Gcreate2(g1, name1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Gclose(g1) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2020-09-30 22:27:10 +08:00
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if (H5Gclose(g2) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
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2002-03-29 03:27:45 +08:00
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/* Open groups */
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2020-09-30 22:27:10 +08:00
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if ((g1 = H5Gopen2(fid, name1, H5P_DEFAULT)) < 0)
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2022-05-04 23:49:01 +08:00
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TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((g2 = H5Gopen2(fid, name2, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(g1) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(g2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2006-10-02 18:24:03 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-08-14 04:53:35 +08:00
|
|
|
|
2005-11-15 10:55:39 +08:00
|
|
|
/* Release name buffers */
|
2023-06-29 06:48:12 +08:00
|
|
|
free(name2);
|
|
|
|
|
free(name1);
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2002-03-29 03:27:45 +08:00
|
|
|
PASSED();
|
|
|
|
|
return 0;
|
|
|
|
|
|
2006-10-02 18:24:03 +08:00
|
|
|
error:
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
2002-03-29 03:27:45 +08:00
|
|
|
H5Gclose(g1);
|
|
|
|
|
H5Gclose(g2);
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Fclose(fid);
|
2023-06-29 06:48:12 +08:00
|
|
|
free(name2);
|
|
|
|
|
free(name1);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
1998-11-25 22:58:22 +08:00
|
|
|
return 1;
|
2006-10-02 18:24:03 +08:00
|
|
|
} /* end test_long() */
|
1998-11-25 22:58:22 +08:00
|
|
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: test_large
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Creates a really large directory.
|
|
|
|
|
*
|
2019-08-16 05:46:00 +08:00
|
|
|
* Return: Success: 0
|
1998-11-25 22:58:22 +08:00
|
|
|
*
|
2019-08-16 05:46:00 +08:00
|
|
|
* Failure: number of errors
|
1998-11-25 22:58:22 +08:00
|
|
|
*
|
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
static int
|
2023-09-06 04:11:52 +08:00
|
|
|
test_large(hid_t fcpl, hid_t fapl, bool new_format)
|
1998-11-25 22:58:22 +08:00
|
|
|
{
|
2023-09-09 07:06:23 +08:00
|
|
|
hid_t fid = (H5I_INVALID_HID); /* File ID */
|
|
|
|
|
hid_t cwg = (H5I_INVALID_HID), dir = (H5I_INVALID_HID); /* Group IDs */
|
2020-09-30 22:27:10 +08:00
|
|
|
char filename[NAME_BUF_SIZE];
|
|
|
|
|
char name[NAME_BUF_SIZE];
|
|
|
|
|
int i;
|
1998-11-25 22:58:22 +08:00
|
|
|
|
2020-09-30 22:27:10 +08:00
|
|
|
if (new_format)
|
2022-05-04 23:49:01 +08:00
|
|
|
TESTING("large directories (w/new group format)");
|
2006-10-02 18:24:03 +08:00
|
|
|
else
|
2022-05-04 23:49:01 +08:00
|
|
|
TESTING("large directories");
|
2006-10-02 18:24:03 +08:00
|
|
|
|
|
|
|
|
/* Create file */
|
|
|
|
|
h5_fixname(FILENAME[0], fapl, filename, sizeof(filename));
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
1998-11-25 22:58:22 +08:00
|
|
|
|
|
|
|
|
/*
|
|
|
|
|
* Create a directory that has so many entries that the root
|
|
|
|
|
* of the B-tree ends up splitting.
|
|
|
|
|
*/
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((cwg = H5Gcreate2(fid, "/big", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (new_format)
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_stab_test(cwg) != false)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
for (i = 0; i < LARGE_NOBJS; i++) {
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(name, sizeof(name), "%05d%05d", (HDrandom() % 100000), i);
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((dir = H5Gcreate2(cwg, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(dir) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
1998-11-25 22:58:22 +08:00
|
|
|
}
|
2020-09-30 22:27:10 +08:00
|
|
|
if (new_format)
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_new_dense_test(cwg) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(cwg) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2006-10-02 18:24:03 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
1998-11-25 22:58:22 +08:00
|
|
|
|
|
|
|
|
PASSED();
|
|
|
|
|
return 0;
|
|
|
|
|
|
2020-09-30 22:27:10 +08:00
|
|
|
error:
|
|
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
|
|
|
|
H5Gclose(dir);
|
|
|
|
|
H5Gclose(cwg);
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Fclose(fid);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
1998-11-25 22:58:22 +08:00
|
|
|
return 1;
|
2006-10-02 18:24:03 +08:00
|
|
|
} /* end test_large() */
|
1998-11-25 22:58:22 +08:00
|
|
|
|
2005-11-15 10:55:39 +08:00
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: lifecycle
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Test that adding links to a group follow proper "lifecycle"
|
|
|
|
|
* of empty->compact->symbol table->compact->empty. (As group
|
|
|
|
|
* is created, links are added, then links removed)
|
|
|
|
|
*
|
|
|
|
|
* Return: Success: 0
|
|
|
|
|
*
|
|
|
|
|
* Failure: -1
|
|
|
|
|
*
|
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
static int
|
2017-03-14 12:30:37 +08:00
|
|
|
lifecycle(hid_t fcpl, hid_t fapl2)
|
2005-11-15 10:55:39 +08:00
|
|
|
{
|
2023-09-09 07:06:23 +08:00
|
|
|
hid_t fid = (H5I_INVALID_HID); /* File ID */
|
|
|
|
|
hid_t gid = (H5I_INVALID_HID); /* Group ID */
|
|
|
|
|
hid_t gid2 = (H5I_INVALID_HID); /* Datatype ID */
|
|
|
|
|
hid_t gcpl = (H5I_INVALID_HID); /* Group creation property list ID */
|
|
|
|
|
size_t lheap_size_hint; /* Local heap size hint */
|
|
|
|
|
unsigned max_compact; /* Maximum # of links to store in group compactly */
|
|
|
|
|
unsigned min_dense; /* Minimum # of links to store in group "densely" */
|
|
|
|
|
unsigned est_num_entries; /* Estimated # of entries in group */
|
|
|
|
|
unsigned est_name_len; /* Estimated length of entry name */
|
|
|
|
|
unsigned nmsgs; /* Number of messages in group's header */
|
|
|
|
|
H5O_native_info_t ninfo; /* Object info */
|
|
|
|
|
char objname[NAME_BUF_SIZE]; /* Object name */
|
2020-09-30 22:27:10 +08:00
|
|
|
char filename[NAME_BUF_SIZE];
|
|
|
|
|
h5_stat_size_t empty_size; /* Size of an empty file */
|
|
|
|
|
unsigned u; /* Local index variable */
|
|
|
|
|
h5_stat_size_t file_size; /* Size of each file created */
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
TESTING("group lifecycle");
|
|
|
|
|
|
|
|
|
|
/* Create file */
|
2006-10-02 18:24:03 +08:00
|
|
|
h5_fixname(FILENAME[0], fapl2, filename, sizeof(filename));
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Get size of file as empty */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((empty_size = h5_get_file_size(filename, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Re-open file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fopen(filename, H5F_ACC_RDWR, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Set up group creation property list */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gcpl = H5Pcreate(H5P_GROUP_CREATE)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Query default group creation property settings */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_local_heap_size_hint(gcpl, &lheap_size_hint) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (lheap_size_hint != H5G_CRT_GINFO_LHEAP_SIZE_HINT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_link_phase_change(gcpl, &max_compact, &min_dense) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (max_compact != H5G_CRT_GINFO_MAX_COMPACT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (min_dense != H5G_CRT_GINFO_MIN_DENSE)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_est_link_info(gcpl, &est_num_entries, &est_name_len) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (est_num_entries != H5G_CRT_GINFO_EST_NUM_ENTRIES)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (est_name_len != H5G_CRT_GINFO_EST_NAME_LEN)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Set GCPL parameters */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pset_local_heap_size_hint(gcpl, (size_t)LIFECYCLE_LOCAL_HEAP_SIZE_HINT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pset_link_phase_change(gcpl, LIFECYCLE_MAX_COMPACT, LIFECYCLE_MIN_DENSE) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pset_est_link_info(gcpl, LIFECYCLE_EST_NUM_ENTRIES, LIFECYCLE_EST_NAME_LEN) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create group for testing lifecycle */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid = H5Gcreate2(fid, LIFECYCLE_TOP_GROUP, H5P_DEFAULT, gcpl, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2005-11-16 08:52:42 +08:00
|
|
|
/* Query group creation property settings */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_local_heap_size_hint(gcpl, &lheap_size_hint) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (lheap_size_hint != LIFECYCLE_LOCAL_HEAP_SIZE_HINT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_link_phase_change(gcpl, &max_compact, &min_dense) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (max_compact != LIFECYCLE_MAX_COMPACT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (min_dense != LIFECYCLE_MIN_DENSE)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_est_link_info(gcpl, &est_num_entries, &est_name_len) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (est_num_entries != LIFECYCLE_EST_NUM_ENTRIES)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (est_name_len != LIFECYCLE_EST_NAME_LEN)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Use internal testing routine to check that the group has no links or symbol table */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create first "bottom" group */
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), LIFECYCLE_BOTTOM_GROUP, (unsigned)0);
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gcreate2(gid, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on bottom group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid2) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, &nmsgs) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (nmsgs != 1)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create several more bottom groups, to push the top group almost to a symbol table */
|
|
|
|
|
/* (Start counting at '1', since we've already created one bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
for (u = 1; u < LIFECYCLE_MAX_COMPACT; u++) {
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), LIFECYCLE_BOTTOM_GROUP, u);
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gcreate2(gid, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on bottom group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid2) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
} /* end for */
|
|
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, &nmsgs) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (nmsgs != LIFECYCLE_MAX_COMPACT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_new_dense_test(gid) != false)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2005-11-16 08:52:42 +08:00
|
|
|
/* Check that the object header is only one chunk and the space has been allocated correctly */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Oget_native_info(gid, &ninfo, H5O_NATIVE_INFO_HDR) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (ninfo.hdr.space.total != 151)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (ninfo.hdr.space.free != 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (ninfo.hdr.nmesgs != 6)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (ninfo.hdr.nchunks != 1)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-16 08:52:42 +08:00
|
|
|
|
2005-11-15 10:55:39 +08:00
|
|
|
/* Create one more "bottom" group, which should push top group into using a symbol table */
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), LIFECYCLE_BOTTOM_GROUP, u);
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gcreate2(gid, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on bottom group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid2) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_new_dense_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-16 08:52:42 +08:00
|
|
|
|
|
|
|
|
/* Check that the object header is still one chunk and the space has been allocated correctly */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Oget_native_info(gid, &ninfo, H5O_NATIVE_INFO_HDR) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (ninfo.hdr.space.total != 151)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (ninfo.hdr.space.free != 92)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (ninfo.hdr.nmesgs != 3)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (ninfo.hdr.nchunks != 1)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink objects from top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
while (u >= LIFECYCLE_MIN_DENSE) {
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), LIFECYCLE_BOTTOM_GROUP, u);
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(gid, objname, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
u--;
|
|
|
|
|
} /* end while */
|
|
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_new_dense_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink one more object from the group, which should transform back to using links */
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), LIFECYCLE_BOTTOM_GROUP, u);
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(gid, objname, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
u--;
|
|
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, &nmsgs) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (nmsgs != (LIFECYCLE_MIN_DENSE - 1))
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink last two objects from top group */
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), LIFECYCLE_BOTTOM_GROUP, u);
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(gid, objname, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
u--;
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), LIFECYCLE_BOTTOM_GROUP, u);
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(gid, objname, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(fid, LIFECYCLE_TOP_GROUP, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close GCPL */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pclose(gcpl) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2006-10-02 18:24:03 +08:00
|
|
|
|
2005-11-15 10:55:39 +08:00
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Get size of file as empty */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((file_size = h5_get_file_size(filename, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Verify that file is correct size */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (file_size != empty_size)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
PASSED();
|
|
|
|
|
return 0;
|
|
|
|
|
|
|
|
|
|
error:
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Gclose(gcpl);
|
|
|
|
|
H5Gclose(gid2);
|
|
|
|
|
H5Gclose(gid);
|
|
|
|
|
H5Fclose(fid);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
2005-11-15 10:55:39 +08:00
|
|
|
return 1;
|
|
|
|
|
} /* end lifecycle() */
|
|
|
|
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: long_compact
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Test that long links are correctly _not_ put into compact
|
|
|
|
|
* form.
|
|
|
|
|
*
|
|
|
|
|
* Return: Success: 0
|
|
|
|
|
*
|
|
|
|
|
* Failure: -1
|
|
|
|
|
*
|
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
static int
|
2017-03-14 12:30:37 +08:00
|
|
|
long_compact(hid_t fcpl, hid_t fapl2)
|
2005-11-15 10:55:39 +08:00
|
|
|
{
|
2023-09-09 07:06:23 +08:00
|
|
|
hid_t fid = (H5I_INVALID_HID); /* File ID */
|
|
|
|
|
hid_t gid = (H5I_INVALID_HID); /* Group ID */
|
|
|
|
|
hid_t gid2 = (H5I_INVALID_HID); /* Group ID */
|
|
|
|
|
char *objname = NULL; /* Object name */
|
2020-09-30 22:27:10 +08:00
|
|
|
char filename[NAME_BUF_SIZE];
|
|
|
|
|
h5_stat_size_t empty_size; /* Size of an empty file */
|
|
|
|
|
h5_stat_size_t file_size; /* Size of each file created */
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
TESTING("long link names in compact groups");
|
|
|
|
|
|
|
|
|
|
/* Create file */
|
2006-10-02 18:24:03 +08:00
|
|
|
h5_fixname(FILENAME[0], fapl2, filename, sizeof(filename));
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Get size of file as empty */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((empty_size = h5_get_file_size(filename, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Construct very long object name template */
|
2023-06-29 06:48:12 +08:00
|
|
|
if (NULL == (objname = (char *)malloc((size_t)(LONG_COMPACT_LENGTH + 1))))
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-06-30 03:33:46 +08:00
|
|
|
memset(objname, 'a', (size_t)LONG_COMPACT_LENGTH);
|
2005-11-15 10:55:39 +08:00
|
|
|
objname[LONG_COMPACT_LENGTH] = '\0';
|
|
|
|
|
|
|
|
|
|
/* Re-open file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fopen(filename, H5F_ACC_RDWR, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid = H5Gcreate2(fid, "top", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2006-10-02 18:24:03 +08:00
|
|
|
/* Use internal testing routine to check that the group has no links or dense storage */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create first group with "long" name */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gcreate2(gid, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on bottom group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid2) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2006-10-02 18:24:03 +08:00
|
|
|
/* (Should have dense storage to hold links, since name is too long for object header message) */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_new_dense_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create second group with "long" name */
|
|
|
|
|
objname[0] = 'b';
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gcreate2(gid, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on bottom group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid2) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2006-10-02 18:24:03 +08:00
|
|
|
/* (Should have dense storage to hold links, since name is too long for object header message) */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_new_dense_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink second object from top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(gid, objname, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2006-10-02 18:24:03 +08:00
|
|
|
/* (Should still be dense storage to hold links, since name is too long for object header message) */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_new_dense_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink first object from top group */
|
|
|
|
|
objname[0] = 'a';
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(gid, objname, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2006-10-02 18:24:03 +08:00
|
|
|
/* (Should have deleted the dense storage now) */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Free object name */
|
2023-06-29 06:48:12 +08:00
|
|
|
free(objname);
|
2013-02-02 09:53:32 +08:00
|
|
|
objname = NULL;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(fid, "top", H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Get size of file as empty */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((file_size = h5_get_file_size(filename, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Verify that file is correct size */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (file_size != empty_size)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
PASSED();
|
|
|
|
|
return 0;
|
|
|
|
|
|
|
|
|
|
error:
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Gclose(gid2);
|
|
|
|
|
H5Gclose(gid);
|
|
|
|
|
H5Fclose(fid);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
2013-02-02 09:53:32 +08:00
|
|
|
|
2020-09-30 22:27:10 +08:00
|
|
|
if (objname)
|
2023-06-29 06:48:12 +08:00
|
|
|
free(objname);
|
2013-02-02 09:53:32 +08:00
|
|
|
|
2005-11-15 10:55:39 +08:00
|
|
|
return 1;
|
|
|
|
|
} /* end long_compact() */
|
|
|
|
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: read_old
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Test reading a file with "old style" (symbol table) groups
|
|
|
|
|
*
|
|
|
|
|
* Return: Success: 0
|
|
|
|
|
*
|
|
|
|
|
* Failure: -1
|
|
|
|
|
*
|
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
static int
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
read_old(void)
|
2005-11-15 10:55:39 +08:00
|
|
|
{
|
2023-09-09 07:06:23 +08:00
|
|
|
hid_t fid = (H5I_INVALID_HID); /* File ID */
|
|
|
|
|
hid_t gid = (H5I_INVALID_HID); /* Group ID */
|
|
|
|
|
hid_t gid2 = (H5I_INVALID_HID); /* Group ID */
|
|
|
|
|
char objname[NAME_BUF_SIZE]; /* Object name */
|
|
|
|
|
unsigned u; /* Local index variable */
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
TESTING("reading old groups");
|
|
|
|
|
|
2009-10-20 23:08:56 +08:00
|
|
|
/* Make a copy of the data file from svn. */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (h5_make_local_copy(FILE_OLD_GROUPS, FILE_OLD_GROUPS_COPY) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2009-10-20 23:08:56 +08:00
|
|
|
/* Open copied file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fopen(FILE_OLD_GROUPS_COPY, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Attempt to open "old" group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid = H5Gopen2(fid, "old", H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on old group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == false)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_stab_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create a bunch of objects in the group */
|
2020-09-30 22:27:10 +08:00
|
|
|
for (u = 0; u < READ_OLD_NGROUPS; u++) {
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), "Group %u", u);
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gcreate2(gid, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on bottom group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid2) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
} /* end for */
|
|
|
|
|
|
|
|
|
|
/* Check on old group's status */
|
|
|
|
|
/* (Should stay in old "symbol table" form) */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_stab_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Delete new objects from old group */
|
2020-09-30 22:27:10 +08:00
|
|
|
for (u = 0; u < READ_OLD_NGROUPS; u++) {
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), "Group %u", u);
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(gid, objname, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
} /* end for */
|
|
|
|
|
|
|
|
|
|
/* Check on old group's status */
|
2006-10-02 18:24:03 +08:00
|
|
|
/* (Should stay in old "symbol table" form, but have no links) */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == false)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_stab_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close old group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close first file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
PASSED();
|
|
|
|
|
return 0;
|
|
|
|
|
|
|
|
|
|
error:
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Gclose(gid);
|
|
|
|
|
H5Fclose(fid);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
2005-11-15 10:55:39 +08:00
|
|
|
return 1;
|
|
|
|
|
} /* end read_old() */
|
|
|
|
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: no_compact
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Test that its possible to create groups that don't use the
|
|
|
|
|
* compact form directly (and don't use link messages).
|
|
|
|
|
*
|
|
|
|
|
* Return: Success: 0
|
|
|
|
|
*
|
|
|
|
|
* Failure: -1
|
|
|
|
|
*
|
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
static int
|
2017-03-14 12:30:37 +08:00
|
|
|
no_compact(hid_t fcpl, hid_t fapl2)
|
2005-11-15 10:55:39 +08:00
|
|
|
{
|
2023-09-09 07:06:23 +08:00
|
|
|
hid_t fid = (H5I_INVALID_HID); /* File ID */
|
|
|
|
|
hid_t gid = (H5I_INVALID_HID); /* Group ID */
|
|
|
|
|
hid_t gid2 = (H5I_INVALID_HID); /* Datatype ID */
|
|
|
|
|
hid_t gcpl = (H5I_INVALID_HID); /* Group creation property list ID */
|
|
|
|
|
char objname[NAME_BUF_SIZE]; /* Object name */
|
2020-09-30 22:27:10 +08:00
|
|
|
char filename[NAME_BUF_SIZE];
|
|
|
|
|
h5_stat_size_t empty_size; /* Size of an empty file */
|
|
|
|
|
h5_stat_size_t file_size; /* Size of each file created */
|
|
|
|
|
unsigned est_num_entries; /* Estimated # of entries in group */
|
|
|
|
|
unsigned est_name_len; /* Estimated length of entry name */
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
TESTING("group without compact form");
|
|
|
|
|
|
|
|
|
|
/* Create file */
|
2006-10-02 18:24:03 +08:00
|
|
|
h5_fixname(FILENAME[0], fapl2, filename, sizeof(filename));
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Get size of file as empty */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((empty_size = h5_get_file_size(filename, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Re-open file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fopen(filename, H5F_ACC_RDWR, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Set up group creation property list */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gcpl = H5Pcreate(H5P_GROUP_CREATE)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Set GCPL parameters */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pset_link_phase_change(gcpl, NO_COMPACT_MAX_COMPACT, NO_COMPACT_MIN_DENSE) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2006-10-02 18:24:03 +08:00
|
|
|
/* Check information for default group creation */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_est_link_info(gcpl, &est_num_entries, &est_name_len) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (est_num_entries != H5G_CRT_GINFO_EST_NUM_ENTRIES)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (est_name_len != H5G_CRT_GINFO_EST_NAME_LEN)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-16 08:52:42 +08:00
|
|
|
|
2006-10-02 18:24:03 +08:00
|
|
|
/* Create group for testing no compact form */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid = H5Gcreate2(fid, NO_COMPACT_TOP_GROUP, H5P_DEFAULT, gcpl, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close GCPL */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pclose(gcpl) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2006-10-02 18:24:03 +08:00
|
|
|
/* Use internal testing routine to check that the group has no links or dense storage */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create first "bottom" group */
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), NO_COMPACT_BOTTOM_GROUP, (unsigned)0);
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gcreate2(gid, objname, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on bottom group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid2) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__has_links_test(gid, NULL) == true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_new_dense_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink object from top group */
|
2023-09-16 06:13:18 +08:00
|
|
|
snprintf(objname, sizeof(objname), NO_COMPACT_BOTTOM_GROUP, (unsigned)0);
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(gid, objname, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Check on top group's status */
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5G__is_empty_test(gid) != true)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Unlink top group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Ldelete(fid, NO_COMPACT_TOP_GROUP, H5P_DEFAULT) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Get size of file as empty */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((file_size = h5_get_file_size(filename, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Verify that file is correct size */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (file_size != empty_size)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
PASSED();
|
|
|
|
|
return 0;
|
|
|
|
|
|
|
|
|
|
error:
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Gclose(gcpl);
|
|
|
|
|
H5Gclose(gid2);
|
|
|
|
|
H5Gclose(gid);
|
|
|
|
|
H5Fclose(fid);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
2005-11-15 10:55:39 +08:00
|
|
|
return 1;
|
|
|
|
|
} /* end no_compact() */
|
|
|
|
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: gcpl_on_root
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Test setting group creation properties for root group.
|
|
|
|
|
*
|
|
|
|
|
* Return: Success: 0
|
|
|
|
|
*
|
|
|
|
|
* Failure: -1
|
|
|
|
|
*
|
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
static int
|
2007-08-24 04:25:25 +08:00
|
|
|
gcpl_on_root(hid_t fapl2)
|
2005-11-15 10:55:39 +08:00
|
|
|
{
|
2023-09-09 07:06:23 +08:00
|
|
|
hid_t fid = (H5I_INVALID_HID); /* File ID */
|
|
|
|
|
hid_t gid = (H5I_INVALID_HID); /* Group ID */
|
|
|
|
|
hid_t gid2 = (H5I_INVALID_HID); /* Datatype ID */
|
|
|
|
|
hid_t fcpl = (H5I_INVALID_HID); /* File creation property list ID */
|
|
|
|
|
hid_t gcpl = (H5I_INVALID_HID); /* Group creation property list ID */
|
|
|
|
|
hid_t lcpl = (H5I_INVALID_HID); /* Link creation property list ID */
|
|
|
|
|
unsigned max_compact; /* Maximum # of links to store in group compactly */
|
|
|
|
|
unsigned min_dense; /* Minimum # of links to store in group "densely" */
|
2020-09-30 22:27:10 +08:00
|
|
|
char filename[NAME_BUF_SIZE];
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
TESTING("setting root group creation properties");
|
|
|
|
|
|
|
|
|
|
/* Create file */
|
2006-10-02 18:24:03 +08:00
|
|
|
h5_fixname(FILENAME[0], fapl2, filename, sizeof(filename));
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Set up file creation property list */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Set GCPL parameters */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pset_link_phase_change(fcpl, GCPL_ON_ROOT_MAX_COMPACT, GCPL_ON_ROOT_MIN_DENSE) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Query the group creation properties from the FCPL */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_link_phase_change(fcpl, &max_compact, &min_dense) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (max_compact != GCPL_ON_ROOT_MAX_COMPACT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (min_dense != GCPL_ON_ROOT_MIN_DENSE)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create file with modified root group creation properties */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close FCPL */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pclose(fcpl) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Open the root group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Query the group creation properties */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gcpl = H5Gget_create_plist(gid)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_link_phase_change(gcpl, &max_compact, &min_dense) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (max_compact != GCPL_ON_ROOT_MAX_COMPACT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (min_dense != GCPL_ON_ROOT_MIN_DENSE)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close GCPL */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pclose(gcpl) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2006-08-02 23:59:05 +08:00
|
|
|
/* Create a link creation property list, with intermediate group creation set */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((lcpl = H5Pcreate(H5P_LINK_CREATE)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2023-09-06 04:11:52 +08:00
|
|
|
if (H5Pset_create_intermediate_group(lcpl, true) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Create a group and intermediate groups, to check if root group settings are inherited */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gcreate2(gid, GCPL_ON_ROOT_BOTTOM_GROUP, lcpl, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
2006-08-02 23:59:05 +08:00
|
|
|
/* Close LCPL */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pclose(lcpl) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Query the group creation properties */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gcpl = H5Gget_create_plist(gid2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_link_phase_change(gcpl, &max_compact, &min_dense) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (max_compact != H5G_CRT_GINFO_MAX_COMPACT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (min_dense != H5G_CRT_GINFO_MIN_DENSE)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close GCPL */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pclose(gcpl) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Open the middle group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid2 = H5Gopen2(fid, GCPL_ON_ROOT_MIDDLE_GROUP, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Query the group creation properties */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gcpl = H5Gget_create_plist(gid2)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pget_link_phase_change(gcpl, &max_compact, &min_dense) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (max_compact != GCPL_ON_ROOT_MAX_COMPACT)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (min_dense != GCPL_ON_ROOT_MIN_DENSE)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close GCPL */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pclose(gcpl) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close bottom group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid2) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
/* Close root group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2006-10-02 18:24:03 +08:00
|
|
|
|
2005-11-15 10:55:39 +08:00
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2005-11-15 10:55:39 +08:00
|
|
|
|
|
|
|
|
PASSED();
|
|
|
|
|
return 0;
|
|
|
|
|
|
|
|
|
|
error:
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Gclose(lcpl);
|
|
|
|
|
H5Gclose(gcpl);
|
|
|
|
|
H5Gclose(gid2);
|
|
|
|
|
H5Gclose(gid);
|
|
|
|
|
H5Gclose(fcpl);
|
|
|
|
|
H5Fclose(fid);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
2005-11-15 10:55:39 +08:00
|
|
|
return 1;
|
|
|
|
|
} /* end gcpl_on_root() */
|
|
|
|
|
|
2007-08-24 04:25:25 +08:00
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: old_api
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Test old API routines
|
|
|
|
|
*
|
|
|
|
|
* Return: Success: 0
|
|
|
|
|
* Failure: -1
|
|
|
|
|
*
|
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
static int
|
[svn-r15825] Description:
Fix various problems with a the core & sec2 VFDs.
Improve the h5_get_file_size() routine to handle files created with
VFDs that use multiple files.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-09 11:44:22 +08:00
|
|
|
old_api(hid_t fapl)
|
2007-08-24 04:25:25 +08:00
|
|
|
{
|
|
|
|
|
#ifndef H5_NO_DEPRECATED_SYMBOLS
|
2023-09-09 07:06:23 +08:00
|
|
|
hid_t fid = (H5I_INVALID_HID); /* File ID */
|
|
|
|
|
hid_t gid = (H5I_INVALID_HID); /* Group ID */
|
|
|
|
|
h5_stat_size_t small_file_size; /* Size of small group file */
|
|
|
|
|
h5_stat_size_t large_file_size; /* Size of large group file */
|
2020-09-30 22:27:10 +08:00
|
|
|
char filename[NAME_BUF_SIZE];
|
2007-08-24 04:25:25 +08:00
|
|
|
#endif /* H5_NO_DEPRECATED_SYMBOLS */
|
|
|
|
|
|
|
|
|
|
TESTING("old API routines");
|
|
|
|
|
|
|
|
|
|
#ifndef H5_NO_DEPRECATED_SYMBOLS
|
|
|
|
|
/* Create file */
|
|
|
|
|
h5_fixname(FILENAME[0], fapl, filename, sizeof(filename));
|
|
|
|
|
|
|
|
|
|
/* Create file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
|
|
|
|
/* Create a group, with the old API routine and a "small" heap */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid = H5Gcreate1(fid, OLD_API_GROUP, (size_t)0)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
|
|
|
|
/* Close group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
[svn-r15825] Description:
Fix various problems with a the core & sec2 VFDs.
Improve the h5_get_file_size() routine to handle files created with
VFDs that use multiple files.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-09 11:44:22 +08:00
|
|
|
/* Get the size of the file with a "small" heap for group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((small_file_size = h5_get_file_size(filename, fapl)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
|
|
|
|
/* Create file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
|
|
|
|
/* Create a group, with the old API routine and a "large" heap */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid = H5Gcreate1(fid, OLD_API_GROUP, (size_t)10000)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
|
|
|
|
/* Close group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
2007-08-28 23:02:54 +08:00
|
|
|
/* Re-open group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((gid = H5Gopen1(fid, OLD_API_GROUP)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-28 23:02:54 +08:00
|
|
|
|
|
|
|
|
/* Close group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Gclose(gid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-28 23:02:54 +08:00
|
|
|
|
2007-08-24 04:25:25 +08:00
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
FAIL_STACK_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
[svn-r15825] Description:
Fix various problems with a the core & sec2 VFDs.
Improve the h5_get_file_size() routine to handle files created with
VFDs that use multiple files.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-09 11:44:22 +08:00
|
|
|
/* Get the size of the file with a "large" heap for group */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((large_file_size = h5_get_file_size(filename, fapl)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
[svn-r15825] Description:
Fix various problems with a the core & sec2 VFDs.
Improve the h5_get_file_size() routine to handle files created with
VFDs that use multiple files.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-09 11:44:22 +08:00
|
|
|
/* Check that the file with a "large" group heap is actually bigger */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (large_file_size <= small_file_size)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
|
|
|
|
PASSED();
|
2021-01-29 20:55:18 +08:00
|
|
|
#else /* H5_NO_DEPRECATED_SYMBOLS */
|
2007-08-24 04:25:25 +08:00
|
|
|
/* Shut compiler up */
|
2021-02-26 02:15:02 +08:00
|
|
|
(void)fapl;
|
2007-08-24 04:25:25 +08:00
|
|
|
|
|
|
|
|
SKIPPED();
|
2023-09-16 06:13:18 +08:00
|
|
|
puts(" Deprecated API symbols not enabled");
|
2007-08-24 04:25:25 +08:00
|
|
|
#endif /* H5_NO_DEPRECATED_SYMBOLS */
|
|
|
|
|
|
|
|
|
|
return 0;
|
|
|
|
|
|
|
|
|
|
#ifndef H5_NO_DEPRECATED_SYMBOLS
|
|
|
|
|
error:
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Gclose(gid);
|
|
|
|
|
H5Fclose(fid);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
2007-08-24 04:25:25 +08:00
|
|
|
return 1;
|
|
|
|
|
#endif /* H5_NO_DEPRECATED_SYMBOLS */
|
|
|
|
|
} /* end old_api() */
|
|
|
|
|
|
2009-03-24 02:51:29 +08:00
|
|
|
/*-------------------------------------------------------------------------
|
|
|
|
|
* Function: corrupt_stab_msg
|
|
|
|
|
*
|
|
|
|
|
* Purpose: Test that a corrupt symbol table message can be fixed
|
|
|
|
|
* using the cached symbol table information.
|
|
|
|
|
*
|
|
|
|
|
* Return: Success: 0
|
|
|
|
|
* Failure: -1
|
|
|
|
|
*
|
|
|
|
|
*-------------------------------------------------------------------------
|
|
|
|
|
*/
|
|
|
|
|
static int
|
|
|
|
|
corrupt_stab_msg(void)
|
|
|
|
|
{
|
2023-09-09 07:06:23 +08:00
|
|
|
hid_t fid = (H5I_INVALID_HID); /* File ID */
|
|
|
|
|
hid_t did = (H5I_INVALID_HID); /* Dataset ID */
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
TESTING("corrupt symbol table message");
|
|
|
|
|
|
2009-10-20 23:08:56 +08:00
|
|
|
/* Make a copy of the data file from svn. */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (h5_make_local_copy(CORRUPT_STAB_FILE, CORRUPT_STAB_TMP_FILE) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
#ifndef H5_STRICT_FORMAT_CHECKS
|
|
|
|
|
/* Open temp file through HDF5 library */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fopen(CORRUPT_STAB_TMP_FILE, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
/* Open dataset */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((did = H5Dopen2(fid, CORRUPT_STAB_DSET, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
/* Close dataset and file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Dclose(did) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
/* Now reopen with read only access. This verifies that the issue has been
|
|
|
|
|
* corrected, as the symbol table message is not patched in read only mode.
|
|
|
|
|
*/
|
|
|
|
|
|
|
|
|
|
/* Open file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fopen(CORRUPT_STAB_TMP_FILE, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
/* Open dataset */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((did = H5Dopen2(fid, CORRUPT_STAB_DSET, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
/* Close dataset and file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Dclose(did) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
#else /* H5_STRICT_FORMAT_CHECKS */
|
|
|
|
|
/* Open file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fid = H5Fopen(CORRUPT_STAB_TMP_FILE, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
/* Verify that an error is thrown when we try to access the dataset */
|
2021-03-17 23:25:39 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
|
|
|
|
did = H5Dopen2(fid, CORRUPT_STAB_DSET, H5P_DEFAULT);
|
|
|
|
|
}
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_END_TRY
|
|
|
|
|
if (did >= 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
/* Close file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Fclose(fid) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
#endif /* H5_STRICT_FORMAT_CHECKS */
|
|
|
|
|
|
|
|
|
|
PASSED();
|
|
|
|
|
|
|
|
|
|
return 0;
|
|
|
|
|
|
|
|
|
|
error:
|
2020-09-30 22:27:10 +08:00
|
|
|
H5E_BEGIN_TRY
|
|
|
|
|
{
|
2019-08-16 05:46:00 +08:00
|
|
|
H5Dclose(did);
|
|
|
|
|
H5Fclose(fid);
|
2020-09-30 22:27:10 +08:00
|
|
|
}
|
2023-06-16 12:49:02 +08:00
|
|
|
H5E_END_TRY
|
2009-03-24 02:51:29 +08:00
|
|
|
|
|
|
|
|
return 1;
|
2018-03-16 05:54:30 +08:00
|
|
|
} /* end corrupt_stab_msg() */
|
2009-03-24 02:51:29 +08:00
|
|
|
|
1998-11-25 22:58:22 +08:00
|
|
|
/*-------------------------------------------------------------------------
|
2019-08-16 05:46:00 +08:00
|
|
|
* Function: main
|
1998-11-25 22:58:22 +08:00
|
|
|
*
|
2019-08-16 05:46:00 +08:00
|
|
|
* Purpose: Test groups
|
1998-11-25 22:58:22 +08:00
|
|
|
*
|
2019-08-16 05:46:00 +08:00
|
|
|
* Return: Success: zero
|
1998-11-25 22:58:22 +08:00
|
|
|
*
|
2019-08-16 05:46:00 +08:00
|
|
|
* Failure: non-zero
|
1998-11-25 22:58:22 +08:00
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*
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*-------------------------------------------------------------------------
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*/
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int
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|
main(void)
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{
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2020-09-30 22:27:10 +08:00
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hid_t fapl, fapl2; /* File access property list IDs */
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hid_t fcpl, fcpl2; /* File creation property list ID */
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unsigned new_format; /* Whether to use the new format or not */
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|
const char *env_h5_drvr; /* File Driver value from environment */
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2023-09-06 04:11:52 +08:00
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bool contig_addr_vfd; /* Whether VFD used has a contiguous address space */
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bool driver_is_default_compatible;
|
Subfiling VFD (#1883)
* Added support for vector I/O calls to the VFD layer, and
associated test code. Note that this includes the optimization
to allow shortened sizes and types arrays to allow more space
efficient representations of vectors in which all entries are
of the same size and/or type. See the Selection I/o RFC for
further details.
Tested serial and parallel, debug and production on Charis.
serial and parallel debug only on Jelly.
* ran code formatter
quick serial build and test on jelly
* Add H5FD_read_selection() and H5FD_write_selection(). Currently only
translate to scalar calls. Fix const buf in H5FD_write_vector().
* Format source
* Fix comments
* Add selection I/O to chunk code, used when: not using chunk cache, no
datatype conversion, no I/O filters, no page buffer, not using collective
I/O. Requires global variable H5_use_selection_io_g be set to TRUE.
Implemented selection to vector I/O transaltion at the file driver
layer.
* Fix formatting unrelated to previous change to stop github from
complaining.
* Add full API support for selection I/O. Add tests for this.
* Implement selection I/O for contiguous datasets. Fix bug in selection
I/O translation. Add const qualifiers to some internal selection I/O
routines to maintain const-correctness while avoiding memcpys.
* Added vector read / write support to the MPIO VFD, with associated
test code (see testpar/t_vfd.c).
Note that this implementation does NOT support vector entries of
size greater than 2 GB. This must be repaired before release,
but it should be good enough for correctness testing.
As MPIO requires vector I/O requests to be sorted in increasing
address order, also added a vector sort utility in H5FDint.c This
function is tested in passing by the MPIO vector I/O extension.
In passing, repaired a bug in size / type vector extension management
in H5FD_read/write_vector()
Tested parallel debug and production on charis and Jelly.
* Ran source code formatter
* Add support for independent parallel I/O with selection I/O. Add
HDF5_USE_SELECTION_IO env var to control selection I/O (default off).
* Implement parallel collective support for selection I/O.
* Fix comments and run formatter.
* Update selection IO branch with develop (#1215)
Merged branch 'develop' into selection_io
* Sync with develop (#1262)
Updated the branch with develop changes.
* Implement big I/O support for vector I/O requests in the MPIO file
driver.
* Free arrays in H5FD__mpio_read/write_vector() as soon as they're not
needed, to cut down on memory usage during I/O.
* Address comments from code review. Fix const warnings with
H5S_SEL_ITER_INIT().
* Committing clang-format changes
* Feature/subfiling (#1464)
* Initial checkin of merged sub-filing VFD.
Passes regression tests (debug/shared/paralle) on Jelly.
However, bugs and many compiler warnings remain -- not suitable
for merge to develop.
* Minor mods to src/H5FDsubfile_mpi.c to address errors reported by autogen.sh
* Code formatting run -- no test
* Merged my subfiling code fixes into the new selection_io_branch
* Forgot to add the FindMERCURY.cmake file. This will probably disappear soon
* attempting to make a more reliable subfile file open which doesn't return errors. For some unknown reason, the regular posix open will occasionally fail to create a subfile. Some better error handling for file close has been added.
* added NULL option for H5FD_subfiling_config_t in H5Pset_fapl_subfiling (#1034)
* NULL option automatically stacks IOC VFD for subfiling and returns a valid fapl.
* added doxygen subfiling APIs
* Various fixes which allow the IOR benchmark to run correctly
* Lots of updates including the packaging up of the mercury_util source files to enable easier builds for our Benchmarking
* Interim checkin of selection_io_with_subfiling_vfd branch
Moddified testpar/t_vfd.c to test the subfiling vfd with default configuration.
Must update this code to run with a variety of configurations -- most particularly
multiple IO concentrators, and stripe depth small enough to test the other IO
concentrators.
testpar/t_vfd.c exposed a large number of race condidtions -- symtoms included:
1) Crashes (usually seg faults)
2) Heap corruption
3) Stack corruption
4) Double frees of heap space
5) Hangs
6) Out of order execution of I/O requests / violations of POSIX semantics
7) Swapped write requests
Items 1 - 4 turned out to be primarily caused by file close issues --
specifically, the main I/O concentrator thread and its pool of worker threads
were not being shut down properly on file close. Addressing this issue in
combination with some other minor fixes seems to have addressed these issues.
Items 5 & 6 appear to have been caused by issue of I/O requests to the
thread pool in an order that did not maintain POSIX semantics. A rewrite of
the I/O request dispatch code appears to have solved these issues.
Item 7 seems to have been caused by multiple write requests from a given
rank being read by the wrong worker thread. Code to issue "unique" tags for
each write request via the ACK message appears to have cleaned this up.
Note that the code is still in poor condtition. A partial list of known
defects includes:
a) Race condiditon on file close that allows superblock writes to arrive
at the I/O concentrator after it has been shutdown. This defect is
most evident when testpar/t_subfiling_vfd is run with 8 ranks.
b) No error reporting from I/O concentrators -- must design and implement
this. For now, mostly just asserts, which suggests that it should be
run in debug mode.
c) Much commented out and/or un-used code.
d) Code orgnaization
e) Build system with bits of Mercury is awkward -- think of shifting
to pthreads with our own thread pool code.
f) Need to add native support for vector and selection I/O to the subfiling
VFD.
g) Need to review, and posibly rework configuration code.
h) Need to store subfile configuration data in a superblock extension message,
and add code to use this data on file open.
i) Test code is inadequate -- expect more issues as it is extended.
In particular, there is no unit test code for the I/O request dispatch code.
While I think it is correct at present, we need test code to verify this.
Similarly, we need to test with multiple I/O concentrators and much smaller
stripe depth.
My actual code changes were limited to:
src/H5FDioc.c
src/H5FDioc_threads.c
src/H5FDsubfile_int.c
src/H5FDsubfile_mpi.c
src/H5FDsubfiling.c
src/H5FDsubfiling.h
src/H5FDsubfiling_priv.h
testpar/t_subfiling_vfd.c
testpar/t_vfd.c
I'm not sure what is going on with the deletions in src/mercury/src/util.
Tested parallel/debug on Charis and Jelly
* subfiling with selection IO (#1219)
Merged branch 'selection_io' into subfiling branch.
* Subfile name fixes (#1250)
* fixed subfiling naming convention, and added leading zero to rank names.
* Merge branch 'selection_io' into selection_io_with_subfiling_vfd (#1265)
* Added script to join subfiles into a single HDF5 file (#1350)
* Modified H5FD__subfiling_query() to report that the sub-filing VFD supports MPI
This exposed issues with truncate and get EOF in the sub-filing VFD.
I believe I have addressed these issues (get EOF not as fully tested as it should be), howeer,
it exposed race conditions resulting in hangs. As of this writing, I have not been able
to chase these down.
Note that the tests that expose these race conditions are in testpar/t_subfiling_vfd.c, and
are currently skipped. Unskip these tests to reproduce the race conditions.
tested (to the extent possible) debug/parallel on charis and jelly.
* Committing clang-format changes
* fixed H5MM_free
Co-authored-by: mainzer <mainzer#hdfgroup.org>
Co-authored-by: jrmainzer <72230804+jrmainzer@users.noreply.github.com>
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Move Subfiling VFD components into H5FDsubfiling source directory
* Update Autotools build and add H5_HAVE_SUBFILING_VFD macro to H5pubconf.h
* Tidy up CMake build of subfiling sources
* Merge branch 'develop' into feature/subfiling (#1539)
Merge branch 'develop' into feature/subfiling
* Add VFD interface version field to Subfiling and IOC VFDs
* Merge branch 'develop' into feature/subfiling (#1557)
Merge branch 'develop' into feature/subfiling
* Merge branch 'develop' into feature/subfiling (#1563)
Merge branch 'develop' into feature/subfiling
* Tidy up merge artifacts after rebase on develop
* Fix incorrect variable in mirror VFD utils CMake
* Ensure VFD values are always defined
* Add subfiling to CMake VFD_LIST if built
* Mark MPI I/O driver self-initialization global as static
* Add Subfiling VFD to predefined VFDs for HDF5_DRIVER env. variable
* Initial progress towards separating private vs. public subfiling code
* include libgen.h in t_vfd tests for correct dirname/basename
* Committing clang-format changes
* removed mercury option, included subfiling header path (#1577)
Added subfiling status to configure output, installed h5fuse.sh to build directory for use in future tests.
* added check for stdatomic.h (#1578)
* added check for stdatomic.h with subfiling
* added H5_HAVE_SUBFILING_VFD for cmake
* fix old-style-definition warning (#1582)
* fix old-style-definition warning
* added test for enable parallel with subfiling VFD (#1586)
Fails if subfiling VFD is not used with parallel support.
* Subfiling/IOC VFD fixes and tidying (#1619)
* Rename CMake option for Subfiling VFD to be consistent with other VFDs
* Miscellaneous Subfiling fixes
Add error message for unset MPI communicator
Support dynamic loading of subfiling VFD with default configuration
* Temporary fix for subfile name issue
* Added subfile checks (#1634)
* added subfile checks
* Feature/subfiling (#1655)
* Subfiling/IOC VFD cleanup
Fix misuse of MPI_COMM_WORLD in IOC VFD
Propagate Subfiling FAPL MPI settings down to IOC FAPL in default
configuration case
Cleanup IOC VFD debugging code
Change sprintf to snprintf in a few places
* Major work on separating Subfiling and IOC VFDs from each other
* Re-write async_completion func to not overuse stack
* Replace usage of MPI_COMM_WORLD with file's actual MPI communicator
* Refactor H5FDsubfile_mpi.c
* Remove empty file H5FDsubfile_mpi.c
* Separate IOC VFD errors to its own error stack
* Committing clang-format changes
* Remove H5TRACE macros from H5FDioc.c
* Integrate H5FDioc_threads.c with IOC error stack
* Fix for subfile name generation
Use number of I/O concentrators from existing subfiling configuration file, if one exists
* Add temporary barrier in "Get EOF" operation to prevent races on EOF
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix for retrieval of machine Host ID
* Default to MPI_COMM_WORLD if no MPI params set
* added libs rt and pthreads (#1673)
* added libs rt and pthreads
* Feature/subfiling (#1689)
* More tidying of IOC VFD and subfiling debug code
* Remove old unused log file code
* Clear FID from active file map on failure
* Fix bug in generation of subfile names when truncating file
* Change subfile names to start from 1 instead of 0
* Use long long for user-specified stripe size from environment variable
* Skip 0-sized I/Os in low-level IOC I/O routines
* Don't update EOF on read
* Convert printed warning about data size mismatch to assertion
* Don't add base file address to I/O addresses twice
Base address should already be applied as part of H5FDwrite/read_vector calls
* Account for 0-sized I/O vector entries in subfile write/read functions
* Rewrite init_indep_io for clarity
* Correction for IOC wraparound calculations
* Some corrections to iovec calculations
* Remove temporary barrier on EOF retrieval
* Complete work request queue entry on error instead of skipping over
* Account for stripe size wraparound for sf_col_offset calculation
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Re-write and fix bugs in I/O vector filling routines (#1703)
* Rewrite I/O vector filling routines for clarity
* Fix bug with iovec_fill_last when last I/O size is 0
* added subfiling_dir line read (#1714)
* added subfiling_dir line read and use it
* shellcheck fixes
* I/O request dispatch logic update (#1731)
Short-circuit I/O request dispatch when head of I/O queue is an
in-progress get EOF or truncate operation. This prevents an issue where
a write operation can be dispatched alongside a get EOF/truncate
operation, whereas all I/O requests are supposed to be ineligible for
dispatch until the get EOF/truncate is completed
* h5fuse.sh.in clean-up (#1757)
* Added command-line options
* Committing clang-format changes
* Align with changes from develop
* Mimic MPI I/O VFD for EOF handling
* Initialize context_id field for work request objects
* Use logfile for some debugging information
* Use atomic store to set IOC ready flag
* Use separate communicator for sending file EOF data
Minor IOC cleanup
* Use H5_subfile_fid_to_context to get context ID for file in Subfiling
VFD
* IOVEC calculation fixes
* Updates for debugging code
* Minor fixes for threaded code
* Committing clang-format changes
* Use separate MPI communicator for barrier operations
* Committing clang-format changes
* Rewrite EOF routine to use nonblocking MPI communication
* Committing clang-format changes
* Always dispatch I/O work requests in IOC main loop
* Return distinct MPI communicator to library when requested
* Minor warning cleanup
* Committing clang-format changes
* Generate h5fuse.sh from h5fuse.sh.in in CMake
* Send truncate messages to correct IOC rank
* Committing clang-format changes
* Miscellaneous cleanup
Post some MPI receives before sends
Free some duplicated MPI communicator/Info objects
Remove unnecessary extra MPI_Barrier
* Warning cleanup
* Fix for leaked MPI communicator
* Retrieve file EOF on single rank and bcast it
* Fixes for a few failure paths
* Cleanup of IOC file opens
* Committing clang-format changes
* Use plan MPI_Send for send of EOF messages
* Always check MPI thread support level during Subfiling init
* Committing clang-format changes
* Handle a hang on failure when IOCs can't open subfiles
* Committing clang-format changes
* Refactor file open status consensus check
* Committing clang-format changes
* Fix for MPI_Comm_free being called after MPI_Finalize
* Fix VFD test by setting MPI params before setting subfiling on FAPL
* Update Subfiling VFD error handling and error stack usage
* Improvements for Subfiling logfiles
* Remove prototypes for currently unused routines
* Disable I/O queue stat collecting by default
* Remove unused serialization mutex variable
* Update VFD testing to take subfiling VFD into account
* Fix usage of global subfiling application layout object
* Minor fixes for failure pathways
* Keep track of the number of failures in an IOC I/O queue
* Make sure not to exceed MPI_TAG_UB value for data communication messages
* Committing clang-format changes
* Update for rename of some H5FD 'ctl' opcodes
* Always include Subfiling's public header files in hdf5.h
* Remove old unused code and comments
* Implement support for per-file I/O queues
Allows the subfiling VFD to have multiple HDF5 files open simultaneously
* Use simple MPI_Iprobe over unnecessary MPI_Improbe
* Committing clang-format changes
* Update HDF5 testing to query driver for H5FD_FEAT_DEFAULT_VFD_COMPATIBLE
flag
* Fix a few bugs related to file multi-opens
* Avoid calling MPI routines if subfiling gets reinitialized
* Fix issue when files are closed in a random order
* Update HDF5 testing to query VFD for "using MPI" feature flag
* Register atexit handler in subfiling VFD to call MPI_Finalize after HDF5
closes
* Fail for collective I/O requests until support is implemented
* Correct VOL test function prototypes
* Minor cleanup of old code and comments
* Update mercury dependency
* Cleanup of subfiling configuration structure
* Committing clang-format changes
* Build system updates for Subfiling VFD
* Fix possible hang on failure in t_vfd tests caused by mismatched
MPI_Barrier calls
* Copy subfiling IOC fapl in "fapl get" method
* Mirror subfiling superblock writes to stub file for legacy POSIX-y HDF5
applications
* Allow collective I/O for MPI_BYTE types and rank 0 bcast strategy
* Committing clang-format changes
* Use different scheme for subfiling write message MPI tag calculations
* Committing clang-format changes
* Avoid performing fstat calls on all MPI ranks
* Add MPI_Barrier before finalizing IOC threads
* Use try_lock in I/O queue dispatch to minimize contention from worker threads
* Use simple Waitall for nonblocking I/O waits
* Add configurable IOC main thread delay and try_lock option to I/O queue dispatch
* Fix bug that could cause serialization of non-overlapping I/O requests
* Temporarily treat collective subfiling vector I/O calls as independent
* Removed unused mercury bits
* Add stubs for subfiling and IOC file delete callback
* Update VFD testing for Subfiling VFD
* Work around HDF5 metadata cache bug for Subfiling VFD when MPI Comm size
= 1
* Committing clang-format changes
Co-authored-by: mainzer <mainzer#hdfgroup.org>
Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>
Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: jrmainzer <72230804+jrmainzer@users.noreply.github.com>
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
2022-07-23 04:03:12 +08:00
|
|
|
int nerrors = 0;
|
2017-03-14 12:30:37 +08:00
|
|
|
|
|
|
|
|
/* Get the VFD to use */
|
2023-09-27 04:11:22 +08:00
|
|
|
env_h5_drvr = getenv(HDF5_DRIVER);
|
2020-09-30 22:27:10 +08:00
|
|
|
if (env_h5_drvr == NULL)
|
2017-03-14 12:30:37 +08:00
|
|
|
env_h5_drvr = "nomatch";
|
|
|
|
|
|
2021-12-07 22:27:29 +08:00
|
|
|
/* VFD that does not support contiguous address space */
|
2023-09-16 06:13:18 +08:00
|
|
|
contig_addr_vfd = (bool)(strcmp(env_h5_drvr, "split") != 0 && strcmp(env_h5_drvr, "multi") != 0);
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
|
|
|
|
|
/* Reset library */
|
|
|
|
|
h5_reset();
|
|
|
|
|
fapl = h5_fileaccess();
|
|
|
|
|
|
Subfiling VFD (#1883)
* Added support for vector I/O calls to the VFD layer, and
associated test code. Note that this includes the optimization
to allow shortened sizes and types arrays to allow more space
efficient representations of vectors in which all entries are
of the same size and/or type. See the Selection I/o RFC for
further details.
Tested serial and parallel, debug and production on Charis.
serial and parallel debug only on Jelly.
* ran code formatter
quick serial build and test on jelly
* Add H5FD_read_selection() and H5FD_write_selection(). Currently only
translate to scalar calls. Fix const buf in H5FD_write_vector().
* Format source
* Fix comments
* Add selection I/O to chunk code, used when: not using chunk cache, no
datatype conversion, no I/O filters, no page buffer, not using collective
I/O. Requires global variable H5_use_selection_io_g be set to TRUE.
Implemented selection to vector I/O transaltion at the file driver
layer.
* Fix formatting unrelated to previous change to stop github from
complaining.
* Add full API support for selection I/O. Add tests for this.
* Implement selection I/O for contiguous datasets. Fix bug in selection
I/O translation. Add const qualifiers to some internal selection I/O
routines to maintain const-correctness while avoiding memcpys.
* Added vector read / write support to the MPIO VFD, with associated
test code (see testpar/t_vfd.c).
Note that this implementation does NOT support vector entries of
size greater than 2 GB. This must be repaired before release,
but it should be good enough for correctness testing.
As MPIO requires vector I/O requests to be sorted in increasing
address order, also added a vector sort utility in H5FDint.c This
function is tested in passing by the MPIO vector I/O extension.
In passing, repaired a bug in size / type vector extension management
in H5FD_read/write_vector()
Tested parallel debug and production on charis and Jelly.
* Ran source code formatter
* Add support for independent parallel I/O with selection I/O. Add
HDF5_USE_SELECTION_IO env var to control selection I/O (default off).
* Implement parallel collective support for selection I/O.
* Fix comments and run formatter.
* Update selection IO branch with develop (#1215)
Merged branch 'develop' into selection_io
* Sync with develop (#1262)
Updated the branch with develop changes.
* Implement big I/O support for vector I/O requests in the MPIO file
driver.
* Free arrays in H5FD__mpio_read/write_vector() as soon as they're not
needed, to cut down on memory usage during I/O.
* Address comments from code review. Fix const warnings with
H5S_SEL_ITER_INIT().
* Committing clang-format changes
* Feature/subfiling (#1464)
* Initial checkin of merged sub-filing VFD.
Passes regression tests (debug/shared/paralle) on Jelly.
However, bugs and many compiler warnings remain -- not suitable
for merge to develop.
* Minor mods to src/H5FDsubfile_mpi.c to address errors reported by autogen.sh
* Code formatting run -- no test
* Merged my subfiling code fixes into the new selection_io_branch
* Forgot to add the FindMERCURY.cmake file. This will probably disappear soon
* attempting to make a more reliable subfile file open which doesn't return errors. For some unknown reason, the regular posix open will occasionally fail to create a subfile. Some better error handling for file close has been added.
* added NULL option for H5FD_subfiling_config_t in H5Pset_fapl_subfiling (#1034)
* NULL option automatically stacks IOC VFD for subfiling and returns a valid fapl.
* added doxygen subfiling APIs
* Various fixes which allow the IOR benchmark to run correctly
* Lots of updates including the packaging up of the mercury_util source files to enable easier builds for our Benchmarking
* Interim checkin of selection_io_with_subfiling_vfd branch
Moddified testpar/t_vfd.c to test the subfiling vfd with default configuration.
Must update this code to run with a variety of configurations -- most particularly
multiple IO concentrators, and stripe depth small enough to test the other IO
concentrators.
testpar/t_vfd.c exposed a large number of race condidtions -- symtoms included:
1) Crashes (usually seg faults)
2) Heap corruption
3) Stack corruption
4) Double frees of heap space
5) Hangs
6) Out of order execution of I/O requests / violations of POSIX semantics
7) Swapped write requests
Items 1 - 4 turned out to be primarily caused by file close issues --
specifically, the main I/O concentrator thread and its pool of worker threads
were not being shut down properly on file close. Addressing this issue in
combination with some other minor fixes seems to have addressed these issues.
Items 5 & 6 appear to have been caused by issue of I/O requests to the
thread pool in an order that did not maintain POSIX semantics. A rewrite of
the I/O request dispatch code appears to have solved these issues.
Item 7 seems to have been caused by multiple write requests from a given
rank being read by the wrong worker thread. Code to issue "unique" tags for
each write request via the ACK message appears to have cleaned this up.
Note that the code is still in poor condtition. A partial list of known
defects includes:
a) Race condiditon on file close that allows superblock writes to arrive
at the I/O concentrator after it has been shutdown. This defect is
most evident when testpar/t_subfiling_vfd is run with 8 ranks.
b) No error reporting from I/O concentrators -- must design and implement
this. For now, mostly just asserts, which suggests that it should be
run in debug mode.
c) Much commented out and/or un-used code.
d) Code orgnaization
e) Build system with bits of Mercury is awkward -- think of shifting
to pthreads with our own thread pool code.
f) Need to add native support for vector and selection I/O to the subfiling
VFD.
g) Need to review, and posibly rework configuration code.
h) Need to store subfile configuration data in a superblock extension message,
and add code to use this data on file open.
i) Test code is inadequate -- expect more issues as it is extended.
In particular, there is no unit test code for the I/O request dispatch code.
While I think it is correct at present, we need test code to verify this.
Similarly, we need to test with multiple I/O concentrators and much smaller
stripe depth.
My actual code changes were limited to:
src/H5FDioc.c
src/H5FDioc_threads.c
src/H5FDsubfile_int.c
src/H5FDsubfile_mpi.c
src/H5FDsubfiling.c
src/H5FDsubfiling.h
src/H5FDsubfiling_priv.h
testpar/t_subfiling_vfd.c
testpar/t_vfd.c
I'm not sure what is going on with the deletions in src/mercury/src/util.
Tested parallel/debug on Charis and Jelly
* subfiling with selection IO (#1219)
Merged branch 'selection_io' into subfiling branch.
* Subfile name fixes (#1250)
* fixed subfiling naming convention, and added leading zero to rank names.
* Merge branch 'selection_io' into selection_io_with_subfiling_vfd (#1265)
* Added script to join subfiles into a single HDF5 file (#1350)
* Modified H5FD__subfiling_query() to report that the sub-filing VFD supports MPI
This exposed issues with truncate and get EOF in the sub-filing VFD.
I believe I have addressed these issues (get EOF not as fully tested as it should be), howeer,
it exposed race conditions resulting in hangs. As of this writing, I have not been able
to chase these down.
Note that the tests that expose these race conditions are in testpar/t_subfiling_vfd.c, and
are currently skipped. Unskip these tests to reproduce the race conditions.
tested (to the extent possible) debug/parallel on charis and jelly.
* Committing clang-format changes
* fixed H5MM_free
Co-authored-by: mainzer <mainzer#hdfgroup.org>
Co-authored-by: jrmainzer <72230804+jrmainzer@users.noreply.github.com>
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Move Subfiling VFD components into H5FDsubfiling source directory
* Update Autotools build and add H5_HAVE_SUBFILING_VFD macro to H5pubconf.h
* Tidy up CMake build of subfiling sources
* Merge branch 'develop' into feature/subfiling (#1539)
Merge branch 'develop' into feature/subfiling
* Add VFD interface version field to Subfiling and IOC VFDs
* Merge branch 'develop' into feature/subfiling (#1557)
Merge branch 'develop' into feature/subfiling
* Merge branch 'develop' into feature/subfiling (#1563)
Merge branch 'develop' into feature/subfiling
* Tidy up merge artifacts after rebase on develop
* Fix incorrect variable in mirror VFD utils CMake
* Ensure VFD values are always defined
* Add subfiling to CMake VFD_LIST if built
* Mark MPI I/O driver self-initialization global as static
* Add Subfiling VFD to predefined VFDs for HDF5_DRIVER env. variable
* Initial progress towards separating private vs. public subfiling code
* include libgen.h in t_vfd tests for correct dirname/basename
* Committing clang-format changes
* removed mercury option, included subfiling header path (#1577)
Added subfiling status to configure output, installed h5fuse.sh to build directory for use in future tests.
* added check for stdatomic.h (#1578)
* added check for stdatomic.h with subfiling
* added H5_HAVE_SUBFILING_VFD for cmake
* fix old-style-definition warning (#1582)
* fix old-style-definition warning
* added test for enable parallel with subfiling VFD (#1586)
Fails if subfiling VFD is not used with parallel support.
* Subfiling/IOC VFD fixes and tidying (#1619)
* Rename CMake option for Subfiling VFD to be consistent with other VFDs
* Miscellaneous Subfiling fixes
Add error message for unset MPI communicator
Support dynamic loading of subfiling VFD with default configuration
* Temporary fix for subfile name issue
* Added subfile checks (#1634)
* added subfile checks
* Feature/subfiling (#1655)
* Subfiling/IOC VFD cleanup
Fix misuse of MPI_COMM_WORLD in IOC VFD
Propagate Subfiling FAPL MPI settings down to IOC FAPL in default
configuration case
Cleanup IOC VFD debugging code
Change sprintf to snprintf in a few places
* Major work on separating Subfiling and IOC VFDs from each other
* Re-write async_completion func to not overuse stack
* Replace usage of MPI_COMM_WORLD with file's actual MPI communicator
* Refactor H5FDsubfile_mpi.c
* Remove empty file H5FDsubfile_mpi.c
* Separate IOC VFD errors to its own error stack
* Committing clang-format changes
* Remove H5TRACE macros from H5FDioc.c
* Integrate H5FDioc_threads.c with IOC error stack
* Fix for subfile name generation
Use number of I/O concentrators from existing subfiling configuration file, if one exists
* Add temporary barrier in "Get EOF" operation to prevent races on EOF
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix for retrieval of machine Host ID
* Default to MPI_COMM_WORLD if no MPI params set
* added libs rt and pthreads (#1673)
* added libs rt and pthreads
* Feature/subfiling (#1689)
* More tidying of IOC VFD and subfiling debug code
* Remove old unused log file code
* Clear FID from active file map on failure
* Fix bug in generation of subfile names when truncating file
* Change subfile names to start from 1 instead of 0
* Use long long for user-specified stripe size from environment variable
* Skip 0-sized I/Os in low-level IOC I/O routines
* Don't update EOF on read
* Convert printed warning about data size mismatch to assertion
* Don't add base file address to I/O addresses twice
Base address should already be applied as part of H5FDwrite/read_vector calls
* Account for 0-sized I/O vector entries in subfile write/read functions
* Rewrite init_indep_io for clarity
* Correction for IOC wraparound calculations
* Some corrections to iovec calculations
* Remove temporary barrier on EOF retrieval
* Complete work request queue entry on error instead of skipping over
* Account for stripe size wraparound for sf_col_offset calculation
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Re-write and fix bugs in I/O vector filling routines (#1703)
* Rewrite I/O vector filling routines for clarity
* Fix bug with iovec_fill_last when last I/O size is 0
* added subfiling_dir line read (#1714)
* added subfiling_dir line read and use it
* shellcheck fixes
* I/O request dispatch logic update (#1731)
Short-circuit I/O request dispatch when head of I/O queue is an
in-progress get EOF or truncate operation. This prevents an issue where
a write operation can be dispatched alongside a get EOF/truncate
operation, whereas all I/O requests are supposed to be ineligible for
dispatch until the get EOF/truncate is completed
* h5fuse.sh.in clean-up (#1757)
* Added command-line options
* Committing clang-format changes
* Align with changes from develop
* Mimic MPI I/O VFD for EOF handling
* Initialize context_id field for work request objects
* Use logfile for some debugging information
* Use atomic store to set IOC ready flag
* Use separate communicator for sending file EOF data
Minor IOC cleanup
* Use H5_subfile_fid_to_context to get context ID for file in Subfiling
VFD
* IOVEC calculation fixes
* Updates for debugging code
* Minor fixes for threaded code
* Committing clang-format changes
* Use separate MPI communicator for barrier operations
* Committing clang-format changes
* Rewrite EOF routine to use nonblocking MPI communication
* Committing clang-format changes
* Always dispatch I/O work requests in IOC main loop
* Return distinct MPI communicator to library when requested
* Minor warning cleanup
* Committing clang-format changes
* Generate h5fuse.sh from h5fuse.sh.in in CMake
* Send truncate messages to correct IOC rank
* Committing clang-format changes
* Miscellaneous cleanup
Post some MPI receives before sends
Free some duplicated MPI communicator/Info objects
Remove unnecessary extra MPI_Barrier
* Warning cleanup
* Fix for leaked MPI communicator
* Retrieve file EOF on single rank and bcast it
* Fixes for a few failure paths
* Cleanup of IOC file opens
* Committing clang-format changes
* Use plan MPI_Send for send of EOF messages
* Always check MPI thread support level during Subfiling init
* Committing clang-format changes
* Handle a hang on failure when IOCs can't open subfiles
* Committing clang-format changes
* Refactor file open status consensus check
* Committing clang-format changes
* Fix for MPI_Comm_free being called after MPI_Finalize
* Fix VFD test by setting MPI params before setting subfiling on FAPL
* Update Subfiling VFD error handling and error stack usage
* Improvements for Subfiling logfiles
* Remove prototypes for currently unused routines
* Disable I/O queue stat collecting by default
* Remove unused serialization mutex variable
* Update VFD testing to take subfiling VFD into account
* Fix usage of global subfiling application layout object
* Minor fixes for failure pathways
* Keep track of the number of failures in an IOC I/O queue
* Make sure not to exceed MPI_TAG_UB value for data communication messages
* Committing clang-format changes
* Update for rename of some H5FD 'ctl' opcodes
* Always include Subfiling's public header files in hdf5.h
* Remove old unused code and comments
* Implement support for per-file I/O queues
Allows the subfiling VFD to have multiple HDF5 files open simultaneously
* Use simple MPI_Iprobe over unnecessary MPI_Improbe
* Committing clang-format changes
* Update HDF5 testing to query driver for H5FD_FEAT_DEFAULT_VFD_COMPATIBLE
flag
* Fix a few bugs related to file multi-opens
* Avoid calling MPI routines if subfiling gets reinitialized
* Fix issue when files are closed in a random order
* Update HDF5 testing to query VFD for "using MPI" feature flag
* Register atexit handler in subfiling VFD to call MPI_Finalize after HDF5
closes
* Fail for collective I/O requests until support is implemented
* Correct VOL test function prototypes
* Minor cleanup of old code and comments
* Update mercury dependency
* Cleanup of subfiling configuration structure
* Committing clang-format changes
* Build system updates for Subfiling VFD
* Fix possible hang on failure in t_vfd tests caused by mismatched
MPI_Barrier calls
* Copy subfiling IOC fapl in "fapl get" method
* Mirror subfiling superblock writes to stub file for legacy POSIX-y HDF5
applications
* Allow collective I/O for MPI_BYTE types and rank 0 bcast strategy
* Committing clang-format changes
* Use different scheme for subfiling write message MPI tag calculations
* Committing clang-format changes
* Avoid performing fstat calls on all MPI ranks
* Add MPI_Barrier before finalizing IOC threads
* Use try_lock in I/O queue dispatch to minimize contention from worker threads
* Use simple Waitall for nonblocking I/O waits
* Add configurable IOC main thread delay and try_lock option to I/O queue dispatch
* Fix bug that could cause serialization of non-overlapping I/O requests
* Temporarily treat collective subfiling vector I/O calls as independent
* Removed unused mercury bits
* Add stubs for subfiling and IOC file delete callback
* Update VFD testing for Subfiling VFD
* Work around HDF5 metadata cache bug for Subfiling VFD when MPI Comm size
= 1
* Committing clang-format changes
Co-authored-by: mainzer <mainzer#hdfgroup.org>
Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>
Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: jrmainzer <72230804+jrmainzer@users.noreply.github.com>
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
2022-07-23 04:03:12 +08:00
|
|
|
if (h5_driver_is_default_vfd_compatible(fapl, &driver_is_default_compatible) < 0)
|
|
|
|
|
TEST_ERROR;
|
|
|
|
|
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
/* Copy the file access property list */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fapl2 = H5Pcopy(fapl)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
|
|
|
|
|
/* Set the "use the latest version of the format" bounds for creating objects in the file */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pset_libver_bounds(fapl2, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
|
2017-03-14 12:30:37 +08:00
|
|
|
/* Set up file creation property list */
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2020-09-30 22:27:10 +08:00
|
|
|
if ((fcpl2 = H5Pcopy(fcpl)) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2019-08-16 05:46:00 +08:00
|
|
|
|
2017-03-14 12:30:37 +08:00
|
|
|
/* Set to use paged aggregation strategy and persisting free-space */
|
|
|
|
|
/* Skip testing for multi/split drivers */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (H5Pset_file_space_strategy(fcpl2, H5F_FSPACE_STRATEGY_PAGE, 1, (hsize_t)1) < 0)
|
2022-05-04 23:49:01 +08:00
|
|
|
TEST_ERROR;
|
2017-03-14 12:30:37 +08:00
|
|
|
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
/* Loop over using new group format */
|
2023-09-06 04:11:52 +08:00
|
|
|
for (new_format = false; new_format <= true; new_format++) {
|
2017-03-14 12:30:37 +08:00
|
|
|
hid_t my_fapl = fapl;
|
|
|
|
|
hid_t my_fcpl = fcpl;
|
|
|
|
|
|
2020-09-30 22:27:10 +08:00
|
|
|
if (!contig_addr_vfd)
|
2017-03-14 12:30:37 +08:00
|
|
|
continue;
|
|
|
|
|
|
2020-09-30 22:27:10 +08:00
|
|
|
if (new_format) {
|
2017-03-14 12:30:37 +08:00
|
|
|
my_fapl = fapl2;
|
2020-09-30 22:27:10 +08:00
|
|
|
my_fcpl = fcpl2; /* Set to use paged aggregation and persisting free-space */
|
2017-03-14 12:30:37 +08:00
|
|
|
}
|
|
|
|
|
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
/* Perform basic tests, with old & new style groups */
|
2017-03-14 12:30:37 +08:00
|
|
|
nerrors += test_misc(my_fcpl, my_fapl, new_format);
|
|
|
|
|
nerrors += test_long(my_fcpl, my_fapl, new_format);
|
|
|
|
|
nerrors += test_large(my_fcpl, my_fapl, new_format);
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
} /* end for */
|
|
|
|
|
|
|
|
|
|
/* New format group specific tests (require new format features) */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (contig_addr_vfd) {
|
2017-03-14 12:30:37 +08:00
|
|
|
nerrors += lifecycle(fcpl2, fapl2);
|
|
|
|
|
nerrors += long_compact(fcpl2, fapl2);
|
2021-09-30 02:28:12 +08:00
|
|
|
|
Subfiling VFD (#1883)
* Added support for vector I/O calls to the VFD layer, and
associated test code. Note that this includes the optimization
to allow shortened sizes and types arrays to allow more space
efficient representations of vectors in which all entries are
of the same size and/or type. See the Selection I/o RFC for
further details.
Tested serial and parallel, debug and production on Charis.
serial and parallel debug only on Jelly.
* ran code formatter
quick serial build and test on jelly
* Add H5FD_read_selection() and H5FD_write_selection(). Currently only
translate to scalar calls. Fix const buf in H5FD_write_vector().
* Format source
* Fix comments
* Add selection I/O to chunk code, used when: not using chunk cache, no
datatype conversion, no I/O filters, no page buffer, not using collective
I/O. Requires global variable H5_use_selection_io_g be set to TRUE.
Implemented selection to vector I/O transaltion at the file driver
layer.
* Fix formatting unrelated to previous change to stop github from
complaining.
* Add full API support for selection I/O. Add tests for this.
* Implement selection I/O for contiguous datasets. Fix bug in selection
I/O translation. Add const qualifiers to some internal selection I/O
routines to maintain const-correctness while avoiding memcpys.
* Added vector read / write support to the MPIO VFD, with associated
test code (see testpar/t_vfd.c).
Note that this implementation does NOT support vector entries of
size greater than 2 GB. This must be repaired before release,
but it should be good enough for correctness testing.
As MPIO requires vector I/O requests to be sorted in increasing
address order, also added a vector sort utility in H5FDint.c This
function is tested in passing by the MPIO vector I/O extension.
In passing, repaired a bug in size / type vector extension management
in H5FD_read/write_vector()
Tested parallel debug and production on charis and Jelly.
* Ran source code formatter
* Add support for independent parallel I/O with selection I/O. Add
HDF5_USE_SELECTION_IO env var to control selection I/O (default off).
* Implement parallel collective support for selection I/O.
* Fix comments and run formatter.
* Update selection IO branch with develop (#1215)
Merged branch 'develop' into selection_io
* Sync with develop (#1262)
Updated the branch with develop changes.
* Implement big I/O support for vector I/O requests in the MPIO file
driver.
* Free arrays in H5FD__mpio_read/write_vector() as soon as they're not
needed, to cut down on memory usage during I/O.
* Address comments from code review. Fix const warnings with
H5S_SEL_ITER_INIT().
* Committing clang-format changes
* Feature/subfiling (#1464)
* Initial checkin of merged sub-filing VFD.
Passes regression tests (debug/shared/paralle) on Jelly.
However, bugs and many compiler warnings remain -- not suitable
for merge to develop.
* Minor mods to src/H5FDsubfile_mpi.c to address errors reported by autogen.sh
* Code formatting run -- no test
* Merged my subfiling code fixes into the new selection_io_branch
* Forgot to add the FindMERCURY.cmake file. This will probably disappear soon
* attempting to make a more reliable subfile file open which doesn't return errors. For some unknown reason, the regular posix open will occasionally fail to create a subfile. Some better error handling for file close has been added.
* added NULL option for H5FD_subfiling_config_t in H5Pset_fapl_subfiling (#1034)
* NULL option automatically stacks IOC VFD for subfiling and returns a valid fapl.
* added doxygen subfiling APIs
* Various fixes which allow the IOR benchmark to run correctly
* Lots of updates including the packaging up of the mercury_util source files to enable easier builds for our Benchmarking
* Interim checkin of selection_io_with_subfiling_vfd branch
Moddified testpar/t_vfd.c to test the subfiling vfd with default configuration.
Must update this code to run with a variety of configurations -- most particularly
multiple IO concentrators, and stripe depth small enough to test the other IO
concentrators.
testpar/t_vfd.c exposed a large number of race condidtions -- symtoms included:
1) Crashes (usually seg faults)
2) Heap corruption
3) Stack corruption
4) Double frees of heap space
5) Hangs
6) Out of order execution of I/O requests / violations of POSIX semantics
7) Swapped write requests
Items 1 - 4 turned out to be primarily caused by file close issues --
specifically, the main I/O concentrator thread and its pool of worker threads
were not being shut down properly on file close. Addressing this issue in
combination with some other minor fixes seems to have addressed these issues.
Items 5 & 6 appear to have been caused by issue of I/O requests to the
thread pool in an order that did not maintain POSIX semantics. A rewrite of
the I/O request dispatch code appears to have solved these issues.
Item 7 seems to have been caused by multiple write requests from a given
rank being read by the wrong worker thread. Code to issue "unique" tags for
each write request via the ACK message appears to have cleaned this up.
Note that the code is still in poor condtition. A partial list of known
defects includes:
a) Race condiditon on file close that allows superblock writes to arrive
at the I/O concentrator after it has been shutdown. This defect is
most evident when testpar/t_subfiling_vfd is run with 8 ranks.
b) No error reporting from I/O concentrators -- must design and implement
this. For now, mostly just asserts, which suggests that it should be
run in debug mode.
c) Much commented out and/or un-used code.
d) Code orgnaization
e) Build system with bits of Mercury is awkward -- think of shifting
to pthreads with our own thread pool code.
f) Need to add native support for vector and selection I/O to the subfiling
VFD.
g) Need to review, and posibly rework configuration code.
h) Need to store subfile configuration data in a superblock extension message,
and add code to use this data on file open.
i) Test code is inadequate -- expect more issues as it is extended.
In particular, there is no unit test code for the I/O request dispatch code.
While I think it is correct at present, we need test code to verify this.
Similarly, we need to test with multiple I/O concentrators and much smaller
stripe depth.
My actual code changes were limited to:
src/H5FDioc.c
src/H5FDioc_threads.c
src/H5FDsubfile_int.c
src/H5FDsubfile_mpi.c
src/H5FDsubfiling.c
src/H5FDsubfiling.h
src/H5FDsubfiling_priv.h
testpar/t_subfiling_vfd.c
testpar/t_vfd.c
I'm not sure what is going on with the deletions in src/mercury/src/util.
Tested parallel/debug on Charis and Jelly
* subfiling with selection IO (#1219)
Merged branch 'selection_io' into subfiling branch.
* Subfile name fixes (#1250)
* fixed subfiling naming convention, and added leading zero to rank names.
* Merge branch 'selection_io' into selection_io_with_subfiling_vfd (#1265)
* Added script to join subfiles into a single HDF5 file (#1350)
* Modified H5FD__subfiling_query() to report that the sub-filing VFD supports MPI
This exposed issues with truncate and get EOF in the sub-filing VFD.
I believe I have addressed these issues (get EOF not as fully tested as it should be), howeer,
it exposed race conditions resulting in hangs. As of this writing, I have not been able
to chase these down.
Note that the tests that expose these race conditions are in testpar/t_subfiling_vfd.c, and
are currently skipped. Unskip these tests to reproduce the race conditions.
tested (to the extent possible) debug/parallel on charis and jelly.
* Committing clang-format changes
* fixed H5MM_free
Co-authored-by: mainzer <mainzer#hdfgroup.org>
Co-authored-by: jrmainzer <72230804+jrmainzer@users.noreply.github.com>
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Move Subfiling VFD components into H5FDsubfiling source directory
* Update Autotools build and add H5_HAVE_SUBFILING_VFD macro to H5pubconf.h
* Tidy up CMake build of subfiling sources
* Merge branch 'develop' into feature/subfiling (#1539)
Merge branch 'develop' into feature/subfiling
* Add VFD interface version field to Subfiling and IOC VFDs
* Merge branch 'develop' into feature/subfiling (#1557)
Merge branch 'develop' into feature/subfiling
* Merge branch 'develop' into feature/subfiling (#1563)
Merge branch 'develop' into feature/subfiling
* Tidy up merge artifacts after rebase on develop
* Fix incorrect variable in mirror VFD utils CMake
* Ensure VFD values are always defined
* Add subfiling to CMake VFD_LIST if built
* Mark MPI I/O driver self-initialization global as static
* Add Subfiling VFD to predefined VFDs for HDF5_DRIVER env. variable
* Initial progress towards separating private vs. public subfiling code
* include libgen.h in t_vfd tests for correct dirname/basename
* Committing clang-format changes
* removed mercury option, included subfiling header path (#1577)
Added subfiling status to configure output, installed h5fuse.sh to build directory for use in future tests.
* added check for stdatomic.h (#1578)
* added check for stdatomic.h with subfiling
* added H5_HAVE_SUBFILING_VFD for cmake
* fix old-style-definition warning (#1582)
* fix old-style-definition warning
* added test for enable parallel with subfiling VFD (#1586)
Fails if subfiling VFD is not used with parallel support.
* Subfiling/IOC VFD fixes and tidying (#1619)
* Rename CMake option for Subfiling VFD to be consistent with other VFDs
* Miscellaneous Subfiling fixes
Add error message for unset MPI communicator
Support dynamic loading of subfiling VFD with default configuration
* Temporary fix for subfile name issue
* Added subfile checks (#1634)
* added subfile checks
* Feature/subfiling (#1655)
* Subfiling/IOC VFD cleanup
Fix misuse of MPI_COMM_WORLD in IOC VFD
Propagate Subfiling FAPL MPI settings down to IOC FAPL in default
configuration case
Cleanup IOC VFD debugging code
Change sprintf to snprintf in a few places
* Major work on separating Subfiling and IOC VFDs from each other
* Re-write async_completion func to not overuse stack
* Replace usage of MPI_COMM_WORLD with file's actual MPI communicator
* Refactor H5FDsubfile_mpi.c
* Remove empty file H5FDsubfile_mpi.c
* Separate IOC VFD errors to its own error stack
* Committing clang-format changes
* Remove H5TRACE macros from H5FDioc.c
* Integrate H5FDioc_threads.c with IOC error stack
* Fix for subfile name generation
Use number of I/O concentrators from existing subfiling configuration file, if one exists
* Add temporary barrier in "Get EOF" operation to prevent races on EOF
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix for retrieval of machine Host ID
* Default to MPI_COMM_WORLD if no MPI params set
* added libs rt and pthreads (#1673)
* added libs rt and pthreads
* Feature/subfiling (#1689)
* More tidying of IOC VFD and subfiling debug code
* Remove old unused log file code
* Clear FID from active file map on failure
* Fix bug in generation of subfile names when truncating file
* Change subfile names to start from 1 instead of 0
* Use long long for user-specified stripe size from environment variable
* Skip 0-sized I/Os in low-level IOC I/O routines
* Don't update EOF on read
* Convert printed warning about data size mismatch to assertion
* Don't add base file address to I/O addresses twice
Base address should already be applied as part of H5FDwrite/read_vector calls
* Account for 0-sized I/O vector entries in subfile write/read functions
* Rewrite init_indep_io for clarity
* Correction for IOC wraparound calculations
* Some corrections to iovec calculations
* Remove temporary barrier on EOF retrieval
* Complete work request queue entry on error instead of skipping over
* Account for stripe size wraparound for sf_col_offset calculation
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Re-write and fix bugs in I/O vector filling routines (#1703)
* Rewrite I/O vector filling routines for clarity
* Fix bug with iovec_fill_last when last I/O size is 0
* added subfiling_dir line read (#1714)
* added subfiling_dir line read and use it
* shellcheck fixes
* I/O request dispatch logic update (#1731)
Short-circuit I/O request dispatch when head of I/O queue is an
in-progress get EOF or truncate operation. This prevents an issue where
a write operation can be dispatched alongside a get EOF/truncate
operation, whereas all I/O requests are supposed to be ineligible for
dispatch until the get EOF/truncate is completed
* h5fuse.sh.in clean-up (#1757)
* Added command-line options
* Committing clang-format changes
* Align with changes from develop
* Mimic MPI I/O VFD for EOF handling
* Initialize context_id field for work request objects
* Use logfile for some debugging information
* Use atomic store to set IOC ready flag
* Use separate communicator for sending file EOF data
Minor IOC cleanup
* Use H5_subfile_fid_to_context to get context ID for file in Subfiling
VFD
* IOVEC calculation fixes
* Updates for debugging code
* Minor fixes for threaded code
* Committing clang-format changes
* Use separate MPI communicator for barrier operations
* Committing clang-format changes
* Rewrite EOF routine to use nonblocking MPI communication
* Committing clang-format changes
* Always dispatch I/O work requests in IOC main loop
* Return distinct MPI communicator to library when requested
* Minor warning cleanup
* Committing clang-format changes
* Generate h5fuse.sh from h5fuse.sh.in in CMake
* Send truncate messages to correct IOC rank
* Committing clang-format changes
* Miscellaneous cleanup
Post some MPI receives before sends
Free some duplicated MPI communicator/Info objects
Remove unnecessary extra MPI_Barrier
* Warning cleanup
* Fix for leaked MPI communicator
* Retrieve file EOF on single rank and bcast it
* Fixes for a few failure paths
* Cleanup of IOC file opens
* Committing clang-format changes
* Use plan MPI_Send for send of EOF messages
* Always check MPI thread support level during Subfiling init
* Committing clang-format changes
* Handle a hang on failure when IOCs can't open subfiles
* Committing clang-format changes
* Refactor file open status consensus check
* Committing clang-format changes
* Fix for MPI_Comm_free being called after MPI_Finalize
* Fix VFD test by setting MPI params before setting subfiling on FAPL
* Update Subfiling VFD error handling and error stack usage
* Improvements for Subfiling logfiles
* Remove prototypes for currently unused routines
* Disable I/O queue stat collecting by default
* Remove unused serialization mutex variable
* Update VFD testing to take subfiling VFD into account
* Fix usage of global subfiling application layout object
* Minor fixes for failure pathways
* Keep track of the number of failures in an IOC I/O queue
* Make sure not to exceed MPI_TAG_UB value for data communication messages
* Committing clang-format changes
* Update for rename of some H5FD 'ctl' opcodes
* Always include Subfiling's public header files in hdf5.h
* Remove old unused code and comments
* Implement support for per-file I/O queues
Allows the subfiling VFD to have multiple HDF5 files open simultaneously
* Use simple MPI_Iprobe over unnecessary MPI_Improbe
* Committing clang-format changes
* Update HDF5 testing to query driver for H5FD_FEAT_DEFAULT_VFD_COMPATIBLE
flag
* Fix a few bugs related to file multi-opens
* Avoid calling MPI routines if subfiling gets reinitialized
* Fix issue when files are closed in a random order
* Update HDF5 testing to query VFD for "using MPI" feature flag
* Register atexit handler in subfiling VFD to call MPI_Finalize after HDF5
closes
* Fail for collective I/O requests until support is implemented
* Correct VOL test function prototypes
* Minor cleanup of old code and comments
* Update mercury dependency
* Cleanup of subfiling configuration structure
* Committing clang-format changes
* Build system updates for Subfiling VFD
* Fix possible hang on failure in t_vfd tests caused by mismatched
MPI_Barrier calls
* Copy subfiling IOC fapl in "fapl get" method
* Mirror subfiling superblock writes to stub file for legacy POSIX-y HDF5
applications
* Allow collective I/O for MPI_BYTE types and rank 0 bcast strategy
* Committing clang-format changes
* Use different scheme for subfiling write message MPI tag calculations
* Committing clang-format changes
* Avoid performing fstat calls on all MPI ranks
* Add MPI_Barrier before finalizing IOC threads
* Use try_lock in I/O queue dispatch to minimize contention from worker threads
* Use simple Waitall for nonblocking I/O waits
* Add configurable IOC main thread delay and try_lock option to I/O queue dispatch
* Fix bug that could cause serialization of non-overlapping I/O requests
* Temporarily treat collective subfiling vector I/O calls as independent
* Removed unused mercury bits
* Add stubs for subfiling and IOC file delete callback
* Update VFD testing for Subfiling VFD
* Work around HDF5 metadata cache bug for Subfiling VFD when MPI Comm size
= 1
* Committing clang-format changes
Co-authored-by: mainzer <mainzer#hdfgroup.org>
Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>
Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: jrmainzer <72230804+jrmainzer@users.noreply.github.com>
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
2022-07-23 04:03:12 +08:00
|
|
|
if (driver_is_default_compatible) {
|
2021-09-30 02:28:12 +08:00
|
|
|
nerrors += read_old();
|
|
|
|
|
}
|
|
|
|
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2017-03-14 12:30:37 +08:00
|
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nerrors += no_compact(fcpl2, fapl2);
|
|
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nerrors += gcpl_on_root(fapl2);
|
|
|
|
|
}
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
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|
|
|
|
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/* Old group API specific tests */
|
|
|
|
|
nerrors += old_api(fapl);
|
2021-09-30 02:28:12 +08:00
|
|
|
|
Subfiling VFD (#1883)
* Added support for vector I/O calls to the VFD layer, and
associated test code. Note that this includes the optimization
to allow shortened sizes and types arrays to allow more space
efficient representations of vectors in which all entries are
of the same size and/or type. See the Selection I/o RFC for
further details.
Tested serial and parallel, debug and production on Charis.
serial and parallel debug only on Jelly.
* ran code formatter
quick serial build and test on jelly
* Add H5FD_read_selection() and H5FD_write_selection(). Currently only
translate to scalar calls. Fix const buf in H5FD_write_vector().
* Format source
* Fix comments
* Add selection I/O to chunk code, used when: not using chunk cache, no
datatype conversion, no I/O filters, no page buffer, not using collective
I/O. Requires global variable H5_use_selection_io_g be set to TRUE.
Implemented selection to vector I/O transaltion at the file driver
layer.
* Fix formatting unrelated to previous change to stop github from
complaining.
* Add full API support for selection I/O. Add tests for this.
* Implement selection I/O for contiguous datasets. Fix bug in selection
I/O translation. Add const qualifiers to some internal selection I/O
routines to maintain const-correctness while avoiding memcpys.
* Added vector read / write support to the MPIO VFD, with associated
test code (see testpar/t_vfd.c).
Note that this implementation does NOT support vector entries of
size greater than 2 GB. This must be repaired before release,
but it should be good enough for correctness testing.
As MPIO requires vector I/O requests to be sorted in increasing
address order, also added a vector sort utility in H5FDint.c This
function is tested in passing by the MPIO vector I/O extension.
In passing, repaired a bug in size / type vector extension management
in H5FD_read/write_vector()
Tested parallel debug and production on charis and Jelly.
* Ran source code formatter
* Add support for independent parallel I/O with selection I/O. Add
HDF5_USE_SELECTION_IO env var to control selection I/O (default off).
* Implement parallel collective support for selection I/O.
* Fix comments and run formatter.
* Update selection IO branch with develop (#1215)
Merged branch 'develop' into selection_io
* Sync with develop (#1262)
Updated the branch with develop changes.
* Implement big I/O support for vector I/O requests in the MPIO file
driver.
* Free arrays in H5FD__mpio_read/write_vector() as soon as they're not
needed, to cut down on memory usage during I/O.
* Address comments from code review. Fix const warnings with
H5S_SEL_ITER_INIT().
* Committing clang-format changes
* Feature/subfiling (#1464)
* Initial checkin of merged sub-filing VFD.
Passes regression tests (debug/shared/paralle) on Jelly.
However, bugs and many compiler warnings remain -- not suitable
for merge to develop.
* Minor mods to src/H5FDsubfile_mpi.c to address errors reported by autogen.sh
* Code formatting run -- no test
* Merged my subfiling code fixes into the new selection_io_branch
* Forgot to add the FindMERCURY.cmake file. This will probably disappear soon
* attempting to make a more reliable subfile file open which doesn't return errors. For some unknown reason, the regular posix open will occasionally fail to create a subfile. Some better error handling for file close has been added.
* added NULL option for H5FD_subfiling_config_t in H5Pset_fapl_subfiling (#1034)
* NULL option automatically stacks IOC VFD for subfiling and returns a valid fapl.
* added doxygen subfiling APIs
* Various fixes which allow the IOR benchmark to run correctly
* Lots of updates including the packaging up of the mercury_util source files to enable easier builds for our Benchmarking
* Interim checkin of selection_io_with_subfiling_vfd branch
Moddified testpar/t_vfd.c to test the subfiling vfd with default configuration.
Must update this code to run with a variety of configurations -- most particularly
multiple IO concentrators, and stripe depth small enough to test the other IO
concentrators.
testpar/t_vfd.c exposed a large number of race condidtions -- symtoms included:
1) Crashes (usually seg faults)
2) Heap corruption
3) Stack corruption
4) Double frees of heap space
5) Hangs
6) Out of order execution of I/O requests / violations of POSIX semantics
7) Swapped write requests
Items 1 - 4 turned out to be primarily caused by file close issues --
specifically, the main I/O concentrator thread and its pool of worker threads
were not being shut down properly on file close. Addressing this issue in
combination with some other minor fixes seems to have addressed these issues.
Items 5 & 6 appear to have been caused by issue of I/O requests to the
thread pool in an order that did not maintain POSIX semantics. A rewrite of
the I/O request dispatch code appears to have solved these issues.
Item 7 seems to have been caused by multiple write requests from a given
rank being read by the wrong worker thread. Code to issue "unique" tags for
each write request via the ACK message appears to have cleaned this up.
Note that the code is still in poor condtition. A partial list of known
defects includes:
a) Race condiditon on file close that allows superblock writes to arrive
at the I/O concentrator after it has been shutdown. This defect is
most evident when testpar/t_subfiling_vfd is run with 8 ranks.
b) No error reporting from I/O concentrators -- must design and implement
this. For now, mostly just asserts, which suggests that it should be
run in debug mode.
c) Much commented out and/or un-used code.
d) Code orgnaization
e) Build system with bits of Mercury is awkward -- think of shifting
to pthreads with our own thread pool code.
f) Need to add native support for vector and selection I/O to the subfiling
VFD.
g) Need to review, and posibly rework configuration code.
h) Need to store subfile configuration data in a superblock extension message,
and add code to use this data on file open.
i) Test code is inadequate -- expect more issues as it is extended.
In particular, there is no unit test code for the I/O request dispatch code.
While I think it is correct at present, we need test code to verify this.
Similarly, we need to test with multiple I/O concentrators and much smaller
stripe depth.
My actual code changes were limited to:
src/H5FDioc.c
src/H5FDioc_threads.c
src/H5FDsubfile_int.c
src/H5FDsubfile_mpi.c
src/H5FDsubfiling.c
src/H5FDsubfiling.h
src/H5FDsubfiling_priv.h
testpar/t_subfiling_vfd.c
testpar/t_vfd.c
I'm not sure what is going on with the deletions in src/mercury/src/util.
Tested parallel/debug on Charis and Jelly
* subfiling with selection IO (#1219)
Merged branch 'selection_io' into subfiling branch.
* Subfile name fixes (#1250)
* fixed subfiling naming convention, and added leading zero to rank names.
* Merge branch 'selection_io' into selection_io_with_subfiling_vfd (#1265)
* Added script to join subfiles into a single HDF5 file (#1350)
* Modified H5FD__subfiling_query() to report that the sub-filing VFD supports MPI
This exposed issues with truncate and get EOF in the sub-filing VFD.
I believe I have addressed these issues (get EOF not as fully tested as it should be), howeer,
it exposed race conditions resulting in hangs. As of this writing, I have not been able
to chase these down.
Note that the tests that expose these race conditions are in testpar/t_subfiling_vfd.c, and
are currently skipped. Unskip these tests to reproduce the race conditions.
tested (to the extent possible) debug/parallel on charis and jelly.
* Committing clang-format changes
* fixed H5MM_free
Co-authored-by: mainzer <mainzer#hdfgroup.org>
Co-authored-by: jrmainzer <72230804+jrmainzer@users.noreply.github.com>
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Move Subfiling VFD components into H5FDsubfiling source directory
* Update Autotools build and add H5_HAVE_SUBFILING_VFD macro to H5pubconf.h
* Tidy up CMake build of subfiling sources
* Merge branch 'develop' into feature/subfiling (#1539)
Merge branch 'develop' into feature/subfiling
* Add VFD interface version field to Subfiling and IOC VFDs
* Merge branch 'develop' into feature/subfiling (#1557)
Merge branch 'develop' into feature/subfiling
* Merge branch 'develop' into feature/subfiling (#1563)
Merge branch 'develop' into feature/subfiling
* Tidy up merge artifacts after rebase on develop
* Fix incorrect variable in mirror VFD utils CMake
* Ensure VFD values are always defined
* Add subfiling to CMake VFD_LIST if built
* Mark MPI I/O driver self-initialization global as static
* Add Subfiling VFD to predefined VFDs for HDF5_DRIVER env. variable
* Initial progress towards separating private vs. public subfiling code
* include libgen.h in t_vfd tests for correct dirname/basename
* Committing clang-format changes
* removed mercury option, included subfiling header path (#1577)
Added subfiling status to configure output, installed h5fuse.sh to build directory for use in future tests.
* added check for stdatomic.h (#1578)
* added check for stdatomic.h with subfiling
* added H5_HAVE_SUBFILING_VFD for cmake
* fix old-style-definition warning (#1582)
* fix old-style-definition warning
* added test for enable parallel with subfiling VFD (#1586)
Fails if subfiling VFD is not used with parallel support.
* Subfiling/IOC VFD fixes and tidying (#1619)
* Rename CMake option for Subfiling VFD to be consistent with other VFDs
* Miscellaneous Subfiling fixes
Add error message for unset MPI communicator
Support dynamic loading of subfiling VFD with default configuration
* Temporary fix for subfile name issue
* Added subfile checks (#1634)
* added subfile checks
* Feature/subfiling (#1655)
* Subfiling/IOC VFD cleanup
Fix misuse of MPI_COMM_WORLD in IOC VFD
Propagate Subfiling FAPL MPI settings down to IOC FAPL in default
configuration case
Cleanup IOC VFD debugging code
Change sprintf to snprintf in a few places
* Major work on separating Subfiling and IOC VFDs from each other
* Re-write async_completion func to not overuse stack
* Replace usage of MPI_COMM_WORLD with file's actual MPI communicator
* Refactor H5FDsubfile_mpi.c
* Remove empty file H5FDsubfile_mpi.c
* Separate IOC VFD errors to its own error stack
* Committing clang-format changes
* Remove H5TRACE macros from H5FDioc.c
* Integrate H5FDioc_threads.c with IOC error stack
* Fix for subfile name generation
Use number of I/O concentrators from existing subfiling configuration file, if one exists
* Add temporary barrier in "Get EOF" operation to prevent races on EOF
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix for retrieval of machine Host ID
* Default to MPI_COMM_WORLD if no MPI params set
* added libs rt and pthreads (#1673)
* added libs rt and pthreads
* Feature/subfiling (#1689)
* More tidying of IOC VFD and subfiling debug code
* Remove old unused log file code
* Clear FID from active file map on failure
* Fix bug in generation of subfile names when truncating file
* Change subfile names to start from 1 instead of 0
* Use long long for user-specified stripe size from environment variable
* Skip 0-sized I/Os in low-level IOC I/O routines
* Don't update EOF on read
* Convert printed warning about data size mismatch to assertion
* Don't add base file address to I/O addresses twice
Base address should already be applied as part of H5FDwrite/read_vector calls
* Account for 0-sized I/O vector entries in subfile write/read functions
* Rewrite init_indep_io for clarity
* Correction for IOC wraparound calculations
* Some corrections to iovec calculations
* Remove temporary barrier on EOF retrieval
* Complete work request queue entry on error instead of skipping over
* Account for stripe size wraparound for sf_col_offset calculation
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Re-write and fix bugs in I/O vector filling routines (#1703)
* Rewrite I/O vector filling routines for clarity
* Fix bug with iovec_fill_last when last I/O size is 0
* added subfiling_dir line read (#1714)
* added subfiling_dir line read and use it
* shellcheck fixes
* I/O request dispatch logic update (#1731)
Short-circuit I/O request dispatch when head of I/O queue is an
in-progress get EOF or truncate operation. This prevents an issue where
a write operation can be dispatched alongside a get EOF/truncate
operation, whereas all I/O requests are supposed to be ineligible for
dispatch until the get EOF/truncate is completed
* h5fuse.sh.in clean-up (#1757)
* Added command-line options
* Committing clang-format changes
* Align with changes from develop
* Mimic MPI I/O VFD for EOF handling
* Initialize context_id field for work request objects
* Use logfile for some debugging information
* Use atomic store to set IOC ready flag
* Use separate communicator for sending file EOF data
Minor IOC cleanup
* Use H5_subfile_fid_to_context to get context ID for file in Subfiling
VFD
* IOVEC calculation fixes
* Updates for debugging code
* Minor fixes for threaded code
* Committing clang-format changes
* Use separate MPI communicator for barrier operations
* Committing clang-format changes
* Rewrite EOF routine to use nonblocking MPI communication
* Committing clang-format changes
* Always dispatch I/O work requests in IOC main loop
* Return distinct MPI communicator to library when requested
* Minor warning cleanup
* Committing clang-format changes
* Generate h5fuse.sh from h5fuse.sh.in in CMake
* Send truncate messages to correct IOC rank
* Committing clang-format changes
* Miscellaneous cleanup
Post some MPI receives before sends
Free some duplicated MPI communicator/Info objects
Remove unnecessary extra MPI_Barrier
* Warning cleanup
* Fix for leaked MPI communicator
* Retrieve file EOF on single rank and bcast it
* Fixes for a few failure paths
* Cleanup of IOC file opens
* Committing clang-format changes
* Use plan MPI_Send for send of EOF messages
* Always check MPI thread support level during Subfiling init
* Committing clang-format changes
* Handle a hang on failure when IOCs can't open subfiles
* Committing clang-format changes
* Refactor file open status consensus check
* Committing clang-format changes
* Fix for MPI_Comm_free being called after MPI_Finalize
* Fix VFD test by setting MPI params before setting subfiling on FAPL
* Update Subfiling VFD error handling and error stack usage
* Improvements for Subfiling logfiles
* Remove prototypes for currently unused routines
* Disable I/O queue stat collecting by default
* Remove unused serialization mutex variable
* Update VFD testing to take subfiling VFD into account
* Fix usage of global subfiling application layout object
* Minor fixes for failure pathways
* Keep track of the number of failures in an IOC I/O queue
* Make sure not to exceed MPI_TAG_UB value for data communication messages
* Committing clang-format changes
* Update for rename of some H5FD 'ctl' opcodes
* Always include Subfiling's public header files in hdf5.h
* Remove old unused code and comments
* Implement support for per-file I/O queues
Allows the subfiling VFD to have multiple HDF5 files open simultaneously
* Use simple MPI_Iprobe over unnecessary MPI_Improbe
* Committing clang-format changes
* Update HDF5 testing to query driver for H5FD_FEAT_DEFAULT_VFD_COMPATIBLE
flag
* Fix a few bugs related to file multi-opens
* Avoid calling MPI routines if subfiling gets reinitialized
* Fix issue when files are closed in a random order
* Update HDF5 testing to query VFD for "using MPI" feature flag
* Register atexit handler in subfiling VFD to call MPI_Finalize after HDF5
closes
* Fail for collective I/O requests until support is implemented
* Correct VOL test function prototypes
* Minor cleanup of old code and comments
* Update mercury dependency
* Cleanup of subfiling configuration structure
* Committing clang-format changes
* Build system updates for Subfiling VFD
* Fix possible hang on failure in t_vfd tests caused by mismatched
MPI_Barrier calls
* Copy subfiling IOC fapl in "fapl get" method
* Mirror subfiling superblock writes to stub file for legacy POSIX-y HDF5
applications
* Allow collective I/O for MPI_BYTE types and rank 0 bcast strategy
* Committing clang-format changes
* Use different scheme for subfiling write message MPI tag calculations
* Committing clang-format changes
* Avoid performing fstat calls on all MPI ranks
* Add MPI_Barrier before finalizing IOC threads
* Use try_lock in I/O queue dispatch to minimize contention from worker threads
* Use simple Waitall for nonblocking I/O waits
* Add configurable IOC main thread delay and try_lock option to I/O queue dispatch
* Fix bug that could cause serialization of non-overlapping I/O requests
* Temporarily treat collective subfiling vector I/O calls as independent
* Removed unused mercury bits
* Add stubs for subfiling and IOC file delete callback
* Update VFD testing for Subfiling VFD
* Work around HDF5 metadata cache bug for Subfiling VFD when MPI Comm size
= 1
* Committing clang-format changes
Co-authored-by: mainzer <mainzer#hdfgroup.org>
Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>
Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: jrmainzer <72230804+jrmainzer@users.noreply.github.com>
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
2022-07-23 04:03:12 +08:00
|
|
|
if (driver_is_default_compatible) {
|
2021-09-30 02:28:12 +08:00
|
|
|
nerrors += corrupt_stab_msg();
|
|
|
|
|
}
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
|
|
|
|
|
/* Close 2nd FAPL */
|
|
|
|
|
H5Pclose(fapl2);
|
2017-03-14 12:30:37 +08:00
|
|
|
H5Pclose(fcpl);
|
|
|
|
|
H5Pclose(fcpl2);
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
|
2011-04-16 06:05:23 +08:00
|
|
|
/* Verify symbol table messages are cached */
|
|
|
|
|
nerrors += (h5_verify_cached_stabs(FILENAME, fapl) < 0 ? 1 : 0);
|
|
|
|
|
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
/* Check for test errors */
|
2020-09-30 22:27:10 +08:00
|
|
|
if (nerrors)
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
goto error;
|
|
|
|
|
|
2023-09-16 06:13:18 +08:00
|
|
|
puts("All symbol table tests passed.");
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
|
|
|
|
|
/* Cleanup */
|
2009-10-20 23:08:56 +08:00
|
|
|
if (GetTestCleanup()) {
|
|
|
|
|
HDremove(FILE_OLD_GROUPS_COPY);
|
|
|
|
|
HDremove(CORRUPT_STAB_TMP_FILE);
|
|
|
|
|
}
|
[svn-r15868] Description:
Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.
Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-15 09:46:34 +08:00
|
|
|
h5_cleanup(FILENAME, fapl);
|
|
|
|
|
|
1998-11-25 22:58:22 +08:00
|
|
|
return 0;
|
|
|
|
|
|
2006-10-02 18:24:03 +08:00
|
|
|
error:
|
2023-09-16 06:13:18 +08:00
|
|
|
puts("*** TESTS FAILED ***");
|
2006-10-02 18:24:03 +08:00
|
|
|
return 1;
|
1998-11-25 22:58:22 +08:00
|
|
|
}
|
