hdf5/tools/h5repack/h5repack.sh.in

#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5.  The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html.  COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page.  It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
#
# Tests for the h5repack tool
#
# Modification:
#  Pedro Vicente Nunes, 11/15/2006
#  Added $FILEN variables for file names
#   

USE_FILTER_SZIP="@USE_FILTER_SZIP@"
USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
USE_FILTER_NBIT="@USE_FILTER_NBIT@"
USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"

H5REPACK=h5repack               # The tool name
H5REPACK_BIN=`pwd`/$H5REPACK    # The path of the tool binary

H5DIFF=../h5diff/h5diff         # The h5diff tool name 
H5DIFF_BIN=`pwd`/$H5DIFF        # The path of the h5diff  tool binary

H5DETECTSZIP=testh5repack_detect_szip              
H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP    

INFO_FILE=testfiles/h5repack.info

FILE0=h5repack_fill.h5
FILE1=h5repack_objs.h5
FILE2=h5repack_attr.h5
FILE3=h5repack_hlink.h5
FILE4=h5repack_layout.h5
FILE5=h5repack_early.h5
FILE7=h5repack_szip.h5
FILE8=h5repack_deflate.h5
FILE9=h5repack_shuffle.h5
FILE10=h5repack_fletcher.h5
FILE11=h5repack_filters.h5
FILE12=h5repack_nbit.h5
FILE13=h5repack_soffset.h5
FILE14=h5repack_layouto.h5      # A file with an older version of the layout message
                                # (copy of test/tlayouto.h5)


nerrors=0
verbose=yes

# The build (current) directory might be different than the source directory.
#
if test -z "$srcdir"; then
   srcdir=.
fi



# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Testing".
#
TESTING() {
   SPACES="                                                               "
   echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
}

# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Verifying".
#
VERIFY() {
 SPACES="                                                               "
 echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
}

# Print a message that a test has been skipped (because a required filter
# was unavailable)
SKIP() {
    TESTING $H5REPACK $@
    echo " -SKIP-"
}

# Call the h5diff tool
#
DIFFTEST() 
{
    VERIFY  $@
    if [ "`uname -s`" = "TFLOPS O/S" ]; then
     $RUNSERIAL $H5DIFF_BIN -q  $@ 
    else
     $RUNSERIAL $H5DIFF_BIN -q  "$@" 
    fi
    RET=$?
    if [ $RET != 0 ] ; then
         echo "*FAILED*"
         nerrors="`expr $nerrors + 1`"
    else
         echo " PASSED"
    fi
        
}
          
# Call h5repack
#
TOOLTEST() 
{
    # Run test.
    # Tflops interprets "$@" as "" when no parameter is given (e.g., the
    # case of missing file name).  Changed it to use $@ till Tflops fixes it.
    TESTING $H5REPACK $@

    infile=$srcdir/testfiles/$1
    path=`pwd`
    outfile=$path/out.$1
    shift
    if [ "`uname -s`" = "TFLOPS O/S" ]; then
     $RUNSERIAL $H5REPACK_BIN $@ $infile $outfile
    else
     $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
    fi

    RET=$?
    if [ $RET != 0 ] ; then
     echo "*FAILED*"
     nerrors="`expr $nerrors + 1`"
    else
     echo " PASSED"
     DIFFTEST $infile $outfile
    fi
    rm -f $outfile
}

TOOLTEST0() 
{
    # Run test.
    # Tflops interprets "$@" as "" when no parameter is given (e.g., the
    # case of missing file name).  Changed it to use $@ till Tflops fixes it.
    TESTING $H5REPACK $@

    infile=$srcdir/testfiles/$1
    path=`pwd`
    outfile=$path/out.$1
    shift
    if [ "`uname -s`" = "TFLOPS O/S" ]; then
     $RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile $@
    else
     $RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@"
    fi

    RET=$?
    if [ $RET != 0 ] ; then
     echo "*FAILED*"
     nerrors="`expr $nerrors + 1`"
    else
     echo " PASSED"
     DIFFTEST $infile $outfile
    fi
    rm -f $outfile
}

#
# The tests
# We use the files generated by h5repacktst
# Each run generates "<file>.out.h5" and the tool h5diff is used to
# compare the input and output files
#
# the tests are the same as the program h5repacktst, but run from the CLI 
#

# See which filters are usable (and skip tests for filters we
# don't have).  Do this by searching H5pubconf.h to see which
# filters are defined.

# detect whether the encoder is present. 
USE_FILTER_SZIP_ENCODER="no";
if test $USE_FILTER_SZIP = "yes"; then
USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN`
fi

# copy files (these files have no filters) 
TOOLTEST $FILE0
TOOLTEST $FILE1
TOOLTEST $FILE2
TOOLTEST $FILE3
TOOLTEST $FILE4
TOOLTEST $FILE5


# use $FILE4 to write some filters  (this file has  no filters)

# gzip with individual object
arg="$FILE4 -f dset1:GZIP=1  -l dset1:CHUNK=20x10"
if test  $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi
  
# gzip for all 
arg="$FILE4 -f GZIP=1"
if test  $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# szip with individual object
arg="$FILE4 -f dset2:SZIP=8,EC  -l dset2:CHUNK=20x10"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg 
fi

# szip for all
arg="$FILE4 -f SZIP=8,NN"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg 
fi

# shuffle with individual object
arg="$FILE4 -f dset2:SHUF  -l dset2:CHUNK=20x10"
if test $USE_FILTER_SHUFFLE != "yes"  ; then
 SKIP $arg
else
 TOOLTEST $arg 
fi
  

# shuffle for all
arg="$FILE4 -f SHUF"
if test $USE_FILTER_SHUFFLE != "yes"  ; then
 SKIP $arg
else
 TOOLTEST $arg
fi
  
# fletcher32  with individual object
arg="$FILE4 -f dset2:FLET  -l dset2:CHUNK=20x10"
if test $USE_FILTER_FLETCHER32 != "yes"  ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# fletcher32 for all
arg="$FILE4 -f FLET"
if test $USE_FILTER_FLETCHER32 != "yes"  ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# all filters
arg="$FILE4 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi
  
###########################################################
# the following tests assume the input files have filters
###########################################################

# szip copy
arg="$FILE7"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi
  
# szip remove
arg="$FILE7 --filter=dset_szip:NONE"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi
  
# deflate copy
arg="$FILE8"
if test $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# deflate remove
arg="$FILE8 -f dset_deflate:NONE"
if test $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi
    
# shuffle copy
arg="$FILE9"
if test $USE_FILTER_SHUFFLE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# shuffle remove
arg="$FILE9 -f dset_shuffle:NONE"
if test $USE_FILTER_SHUFFLE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# fletcher32 copy
arg="$FILE10"
if test $USE_FILTER_FLETCHER32 != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# fletcher32 remove
arg="$FILE10 -f dset_fletcher32:NONE"
if test $USE_FILTER_FLETCHER32 != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi        

# nbit copy
arg="$FILE12"
if test $USE_FILTER_NBIT != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# nbit remove
arg="$FILE12 -f dset_nbit:NONE"
if test $USE_FILTER_NBIT != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi        

# nbit add
arg="$FILE12 -f dset_int31:NBIT"
if test $USE_FILTER_NBIT != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# scaleoffset copy
arg="$FILE13"
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# scaleoffset add
arg="$FILE13 -f dset_none:SOFF=31,IN"
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# scaleoffset remove
arg="$FILE13 -f dset_scaleoffset:NONE"
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi        

# remove all  filters
arg="$FILE11 -f NONE"
if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SHUFFLE != "yes"  -o $USE_FILTER_NBIT != "yes"  -o $USE_FILTER_SCALEOFFSET != "yes"  ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

#filter conversions

arg="$FILE8 -f dset_deflate:SZIP=8,NN"
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg 
fi

arg="$FILE7 -f dset_szip:GZIP=1"
if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes"  -o $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg 
fi


#limit
arg="$FILE4 -f GZIP=1 -m 1024"
if test $USE_FILTER_DEFLATE != "yes"  ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

#file
arg="$FILE4 -e $INFO_FILE"
if test $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg 
else
 TOOLTEST $arg 
fi


#########################################################
# layout options (these files have no filters)
#########################################################

TOOLTEST $FILE4 --layout=dset2:CHUNK=20x10
TOOLTEST $FILE4 -l CHUNK=20x10
TOOLTEST $FILE4 -l dset2:CONTI
TOOLTEST $FILE4 -l CONTI
TOOLTEST $FILE4 -l dset2:COMPA
TOOLTEST $FILE4 -l COMPA


################################################################
# layout conversions (file has no filters)
###############################################################

TOOLTEST $FILE4 -l dset_compact:CONTI
TOOLTEST $FILE4 -l dset_compact:CHUNK=2x5
TOOLTEST $FILE4 -l dset_compact:COMPA
TOOLTEST $FILE4 -l dset_contiguous:COMPA
TOOLTEST $FILE4 -l dset_contiguous:CHUNK=3x6
TOOLTEST $FILE4 -l dset_contiguous:CONTI
TOOLTEST $FILE4 -l dset_chunk:COMPA
TOOLTEST $FILE4 -l dset_chunk:CONTI
TOOLTEST $FILE4 -l dset_chunk:CHUNK=18x13

# Native option
TOOLTEST $FILE1 -n


# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters)
arg="$FILE4 --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]"
if test $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
arg="$FILE4 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
if test $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# several global filters

arg="$FILE4 --filter GZIP=1 --filter SHUF"
if test $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" ; then
 SKIP $arg
else
 TOOLTEST $arg
fi

# syntax of -i infile -o outfile
# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
arg="$FILE4 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
if test $USE_FILTER_DEFLATE != "yes" ; then
 SKIP $arg
else
 TOOLTEST0 $arg
fi 

# add a userblock to file
arg="$FILE1 -u ublock.bin -b 2048"
TOOLTEST $arg

# add alignment
arg="$FILE1 -t 1 -a 1 "
TOOLTEST $arg

# Check repacking file with old version of layout message (should get upgraded
#       to new version and be readable, etc.)
TOOLTEST $FILE14

# test for datum size > H5TOOLS_MALLOCSIZE
TOOLTEST $FILE1 -f GZIP=1

if test $nerrors -eq 0 ; then
   echo "All $H5REPACK tests passed."
fi

exit $nerrors